KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:24:01 2014 Check: 00 .. Name: ENSTTRP00000008337/1-972 Len: 1170 Check: 5082 Weight: 1.00 Name: bmy_10699T0/1-1047 Len: 1170 Check: 5148 Weight: 1.00 Name: ENSP00000386992/1-1015 Len: 1170 Check: 7043 Weight: 1.00 Name: BACU006235/1-975 Len: 1170 Check: 7343 Weight: 1.00 Name: ENSBTAP00000024773/1-975 Len: 1170 Check: 6134 Weight: 1.00 // 1 50 ENSTTRP00000008337/1-972 ---------- ---------- ---------- ---------- ---------- bmy_10699T0/1-1047 VAQRPVGGRW VPALSTAQAH RAALDARRLR FRRESSSLSF RRSPIVFCLC ENSP00000386992/1-1015 ---------- ---------- ---------- ---------- ---------- BACU006235/1-975 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024773/1-975 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000008337/1-972 ---------- ---------- ---------- ---------- ---------- bmy_10699T0/1-1047 LVHALRVSVT QYSSACVVWS RDAEHGAFLE AAFGISRRRR VDWKRGAQDE ENSP00000386992/1-1015 ---------- ---------- ---------- ---------- ---------- BACU006235/1-975 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024773/1-975 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000008337/1-972 ---------- ---------- ---------- ---------- ---------- bmy_10699T0/1-1047 LTPLRVGAWK RESRAIPDRT KRDVKEGGGD TSWGLTAGAT LLFSILFTFV ENSP00000386992/1-1015 ---------- ---------- ---------- ---------- ----MVQPII BACU006235/1-975 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024773/1-975 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000008337/1-972 ---------- ---------- ---------- ----MDLNSA STVVLQVLTQ bmy_10699T0/1-1047 HLYYLWTSDF STVGKVSYRI KPRKSSYKVE FGVSMDLNSA STVVLQVLTQ ENSP00000386992/1-1015 HLGYVVYSLL YLGYKPVQHV TALNTVSSCH KMVSMDLNSA STVVLQVLTQ BACU006235/1-975 ---------- ---------- ---------- ----MDLNSA STVVLQVLTQ ENSBTAP00000024773/1-975 ---------- ---------- ---------- ----MDLNSA STVVLQVLTQ 201 250 ENSTTRP00000008337/1-972 ATSQDTAVLK PAEEQLKQWE TQPGFYSVLL NIFTNHTLDI NVRWLAVLYF bmy_10699T0/1-1047 ATSQDTAVLK PAEEQLKQWE TQPGFYSVLL NIFTNHTLDI NVRWLAVLYF ENSP00000386992/1-1015 ATSQDTAVLK PAEEQLKQWE TQPGFYSVLL NIFTNHTLDI NVRWLAVLYF BACU006235/1-975 ATSQDTAVLK PAEEQLKQWE TQPGFYSVLL NIFTNHTLDI NVRWLAVLYF ENSBTAP00000024773/1-975 ATSQDTAVLK PAEEQLKQWE TQPGFYSVLL NIFTNHTLDI NVRWLAVLYF 251 300 ENSTTRP00000008337/1-972 KNGIDRYWRR VAPHALSEEE KSTLRAGLIT NFNEPINQIA T-IAVLIAKV bmy_10699T0/1-1047 KNGIDRYWRR VAPHALSEEE KSTLRAGLIT NFNEPINQIA TQIAVLIAKV ENSP00000386992/1-1015 KHGIDRYWRR VAPHALSEEE KTTLRAGLIT NFNEPINQIA TQIAVLIAKV BACU006235/1-975 KNGIDRYWRR VAPHALSEEE KSTLRAGLIT NFNEPINQIA TQIAVLIAKV ENSBTAP00000024773/1-975 KNGIDRYWRR VAPHALSEEE KSTLRAGLIT NFNEPINQIA TQIAVLIAKV 301 350 ENSTTRP00000008337/1-972 ARLDCPRQ-P ELIPXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_10699T0/1-1047 ARLDCPRQWP ELIPTLIESV KVQDDLRQHR ALLTFYHVTK TLASKRLAAD ENSP00000386992/1-1015 ARLDCPRQWP ELIPTLIESV KVQDDLRQHR ALLTFYHVTK TLASKRLAAD BACU006235/1-975 ARLDCPRQWP ELIPTLIESV KVQDDLRQHR ALLTFYHVTK TLASKRLAAD ENSBTAP00000024773/1-975 ARLDCPRQWP ELIPTLIESV KVQDDLRQHR ALLTFYHVTK TLASKRLSAD 351 400 ENSTTRP00000008337/1-972 XXXXXXLASG IYSFACSLWN HHTDTFLQQV SSGNEAAVLS SLERTLLSLK bmy_10699T0/1-1047 RKLFYDLASG IYSFACSLWN HHTDTFLQQV SSGNEAAVLS SLERTLLSLK ENSP00000386992/1-1015 RKLFYDLASG IYNFACSLWN HHTDTFLQEV SSGNEAAILS SLERTLLSLK BACU006235/1-975 RKLFYDLASG IYSFACSLWN HHTDTFLQQV SSGNEAAVLS SLERTLLSLK ENSBTAP00000024773/1-975 RKLFYDLASG IYSFACSLWN HHTDTFLQQV SSGNEAAVLS SLERTLLSLK 401 450 ENSTTRP00000008337/1-972 VLRKLTVNGF VEPHKNMEVM GFLHGIFERL KQFLECSRSI GTDNICRDRL bmy_10699T0/1-1047 VLRKLTVNGF VEPHKNMEVM GFLHGIFERL KQFLECSRSI GTDNVCRDRL ENSP00000386992/1-1015 VLRKLTVNGF VEPHKNMEVM GFLHGIFERL KQFLECSRSI GTDNVCRDRL BACU006235/1-975 VLRKLTVNGF VEPHKNMEVM GFLHGIFERL KQFLECSRSI GTDNVCRDRL ENSBTAP00000024773/1-975 VLRKLTVNGI VEPHKNMEVM GFLHGIFERL KQFLECSRSI GADNVCRDRL 451 500 ENSTTRP00000008337/1-972 EKTIILFTKV XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_10699T0/1-1047 EKTIILFTKV LLDFLDQHPF SFTPLIQRSL EFSVSYVFTE VGEGVTFERF ENSP00000386992/1-1015 EKTIILFTKV LLDFLDQHPF SFTPLIQRSL EFSVSYVFTE VGEGVTFERF BACU006235/1-975 EKTIILFTKV LLDFLDQHPF SFTPLIQRSL EFSVSYVFTE VGEGVTFERF ENSBTAP00000024773/1-975 EKTIILFTKV LLDFLDQHPF SFTPLIQRSL EFSVSYVFTE VGEGVTFERF 501 550 ENSTTRP00000008337/1-972 XXXXXXXXXX XXXXXXXXXX XXXXXSSPET LEAHKIKMAF FTYPTLTEIC bmy_10699T0/1-1047 IVQCMNLIKM IVKNYAYKPS KNFEDSSPET LEAHKIKMTF FTYPTLTEIC ENSP00000386992/1-1015 IVQCMNLIKM IVKNYAYKPS KNFEDSSPET LEAHKIKMAF FTYPTLTEIC BACU006235/1-975 IVQCMNLIKM IVKNYAYKPS KNFEDSSPET LEAHKIKMTF FTYPTLTEIC ENSBTAP00000024773/1-975 IVQCMNLIKM IVKNYAYKPS KNFEDSNPAT LEAHKIKMAF FTYPTLTEIC 551 600 ENSTTRP00000008337/1-972 RRLVSHYFLL TEEELTMWEE DPEGFTVEET GGDSWKYSLR PCTEVLFIDI bmy_10699T0/1-1047 RRLVSHYFLL TEEELTMWEE DPEGFTVEET GGDSWKYSLR IDWEITVV-- ENSP00000386992/1-1015 RRLVSHYFLL TEEELTMWEE DPEGFTVEET GGDSWKYSLR PCTEVLFIDI BACU006235/1-975 RRLVSHYFLL TEEELTMWEE DPEGFTVEET GGDSWKYSLR PCTEVLFIDI ENSBTAP00000024773/1-975 RRLVSHYFLL TEEELTMWEE DPEGFTAEET GGDSWKYSLR PCTEVLFIDI 601 650 ENSTTRP00000008337/1-972 FHEYNQTLTP VLLEMMQTLQ GPTNVEDMNA LLIKDAVYNA VGLAAYELFD bmy_10699T0/1-1047 --AENDFFPP XYFR------ -PTNVEDMNA LLIKDAVYNA VGLAAYELFD ENSP00000386992/1-1015 FHEYNQTLTP VLLEMMQTLQ GPTNVEDMNA LLIKDAVYNA VGLAAYELFD BACU006235/1-975 FHEYNQTLTP VLLEMMQTLQ GPTNVEDMNA LLIKDAVYNA VGLAAYELFD ENSBTAP00000024773/1-975 FHEYNQTLTP VLLEMMQTLQ GPTNVEDMNA LLIKDAVYNA VGLAAYELFD 651 700 ENSTTRP00000008337/1-972 SVDFDQWFKN QLLSELQVIH NRYKPLRRRV IWLIGQWISV KFKSDLRPML bmy_10699T0/1-1047 SVDFDQWFKN QLLPELQ--- ----PLRRRV IWLIGQWISV KFKSDLRPML ENSP00000386992/1-1015 SVDFDQWFKN QLLPELQVIH NRYKPLRRRV IWLIGQWISV KFKSDLRPML BACU006235/1-975 SVDFDQWFKN QLLPELQVIH NRYKPLRRRV IWLIGQWISV KFKSDLRPML ENSBTAP00000024773/1-975 SVDFDQWFKN QLLPELQVIH NRYKPLRRRV IWLIGQWISV RFKSDLRPML 701 750 ENSTTRP00000008337/1-972 YEAICNLLQD QDLVVRIETA TTLKLTVDDF EFRTDQFLPY LETMFTLLFQ bmy_10699T0/1-1047 YEAICNLLQD QDLV------ ---------- ---------Y LETMFTLLFQ ENSP00000386992/1-1015 YEAICNLLQD QDLVVRIETA TTLKLTVDDF EFRTDQFLPY LETMFTLLFQ BACU006235/1-975 YEAICNLLQD QDLVVRIETA TTLKLTVDDF EFRTDQFLPY LETMFTLLFQ ENSBTAP00000024773/1-975 YEAICNLLQD QDLVVRIETA TTLKLTVDDF EFRTDQFLPY LETMFTLLFQ 751 800 ENSTTRP00000008337/1-972 LLQQVTECDT KMHVLHVLSC VIERVNMQIR PYVGCLVQYL PLLWKQSEEH bmy_10699T0/1-1047 LLQQVTECDT KMHVLHVLSC VIERVNMQIR PYAGCLVQYL PLLWKQSEEH ENSP00000386992/1-1015 LLQQVTECDT KMHVLHVLSC VIERVNMQIR PYVGCLVQYL PLLWKQSEEH BACU006235/1-975 LLQQVTECDT KMHVLHVLSC VIERVNVQIR PYVGCLVQYL PLLWKQSEEH ENSBTAP00000024773/1-975 LLQQVTECDT KMHVLHVLSC VIERVNVQIR PYVGCLVQYL PLLWKQSEEH 801 850 ENSTTRP00000008337/1-972 NMLRCAILTT LIHLVQGLGA DSKNLYPFLL PVIQLSTDVS QPPHVYLLED bmy_10699T0/1-1047 NMLRCAILTT LIHLVQGLGA DSKNLYPFLL PVIQLSTDVS QPPHVYLLED ENSP00000386992/1-1015 NMLRCAILTT LIHLVQGLGA DSKNLYPFLL PVIQLSTDVS QPPHVYLLED BACU006235/1-975 NMLRCAILTT LIHLVQGLGA DSKNLYPFLL PVIQLSTDVS QPPHVYLLED ENSBTAP00000024773/1-975 NMLRCAILTT LIHLVQGLGA DSKNLYPFLL PVIQLSTDVS QPPHVYLLED 851 900 ENSTTRP00000008337/1-972 GLELWLVT-E NSPCITPELL RIFQNMSPLL ELSSESLRTC FKIINGYIFL bmy_10699T0/1-1047 GLELWLVTLE NSPCITPELL RIFQNMSPLL ELSSESLRTC FKIINGYIFL ENSP00000386992/1-1015 GLELWLVTLE NSPCITPELL RIFQNMSPLL ELSSENLRTC FKIINGYIFL BACU006235/1-975 GLELWLVTLE NSPCITPELL RIFQNMSPLL ELSSESLRTC FKIINGYIFL ENSBTAP00000024773/1-975 GLELWLVTLE NSPCITPELL RIFQNMSPLL ELSSESVRTC FKIINGYIFL 901 950 ENSTTRP00000008337/1-972 SSTEFLQTYA VGLCQSFCEL LNEITTEGQV QVLKVVENAL KVNPVLSPQM bmy_10699T0/1-1047 SSTEFLQTYA VGLCQSFCEL LNEITTEGQV QVLKL---CF KSDMRADERI ENSP00000386992/1-1015 SSTEFLQTYA VGLCQSFCEL LKEITTEGQV QVLKVVENAL KVNPILGPQM BACU006235/1-975 SSTEFLQTYA VGLCQSFCEL LNEITTEGQV QVLKVVENAL KVNPVLSPQM ENSBTAP00000024773/1-975 SSTEFLQTYA VGLCQSFCEL LKEITTDGQV QVLKVVENAL KVNPVLGPQM 951 1000 ENSTTRP00000008337/1-972 FQPILPCVFR GIIE------ GERYPVVMST YLGVMGRVLL Q-----NTSF bmy_10699T0/1-1047 FE-IINLVFK KNISELNDEI GRILTLQFYF FFSFLPHIYF LIFKYFNFHF ENSP00000386992/1-1015 FQPILPYVFK GIIE------ GERYPVVMST YLGVMGRVLL Q-----NTSF BACU006235/1-975 FQPILPCVFR GIIE------ GERYPVVMST YLGVMGRVLL Q-----NTSF ENSBTAP00000024773/1-975 FQPILPCIFR GIIE------ GERYPVVMST YLGVMGRVLL Q-----NTSF 1001 1050 ENSTTRP00000008337/1-972 FSSLLNEMAH KFNQEXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_10699T0/1-1047 TSSFLFLLRD SISLGMDQLL GNMIEMWVDR MDNITQPERR KLSALALLSL ENSP00000386992/1-1015 FSSLLNEMAH KFNQEMDQLL GNMIEMWVDR MDNITQPERR KLSALALLSL BACU006235/1-975 FSSLLNEMAH KFNQEMDQLL GNMIEMWVDR MDNITQPERR KLSALALLSL ENSBTAP00000024773/1-975 FSSLLNEMAH KFNQEMDQLL GNMIEMWVDR MDNITQPERR KLSALALLSL 1051 1100 ENSTTRP00000008337/1-972 XXXXXXVIQD KFCGIINISV EGLHDVMTED PETGTYKDCM LMSHLEEPKV bmy_10699T0/1-1047 LPSDNSI--- ---------- ---------- ---------- ---------- ENSP00000386992/1-1015 LPSDNSVIQD KFCGIINISV EGLHDVMTED PETGTYKDCM LMSHLEEPKV BACU006235/1-975 LPSDNSVIQD KFCGIINISV EGLHDVMTED PETGTYKDCM LMSHLEEPKV ENSBTAP00000024773/1-975 LPSDNSVIQD KFCGIINISV EGLHDVMTED PETGTYKDCM LMSHLEEPKV 1101 1150 ENSTTRP00000008337/1-972 TEDEEPPTEQ DKRKKMLALK DPVHTVSLQQ FIYEKLKAQQ ELLGEQGFQS bmy_10699T0/1-1047 ---------- ----KMLALF WP-----LVL FLYEYIKY-- ---------I ENSP00000386992/1-1015 TEDEEPPTEQ DKRKKMLALK DPVHTVSLQQ FIYEKLKAQQ EMLGEQGFQS BACU006235/1-975 TEDEEPPTEQ DKRKKMLALK DPVHTVSLQQ FIYEKLKAQQ ELLGEQGFQS ENSBTAP00000024773/1-975 TEDEEPPTEQ DKRKKMLALK DPVHTVSLQQ FIYEKLKAQQ ELLGEQGFQS 1151 1200 ENSTTRP00000008337/1-972 LMETVDTEIV TQLQEFLQGF bmy_10699T0/1-1047 IFQFVQFKEV TNGEYFT--- ENSP00000386992/1-1015 LMETVDTEIV TQLQEFLQGF BACU006235/1-975 LMETVDTEIV TQLQEFLQGF ENSBTAP00000024773/1-975 LMETVDTEIV TQLQEFLQGF