KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:24:02 2014 Check: 00 .. Name: ENSTTRP00000001360/1-416 Len: 569 Check: 6831 Weight: 1.00 Name: ENSBTAP00000024779/1-403 Len: 569 Check: 394 Weight: 1.00 Name: bmy_11544T0/1-496 Len: 569 Check: 4866 Weight: 1.00 Name: BACU005548/1-403 Len: 569 Check: 9707 Weight: 1.00 // 1 50 ENSTTRP00000001360/1-416 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024779/1-403 MSGSDAGLEE EPELSITLTL RMLMHGKEVG SIIGKKGETV KRIRE----- bmy_11544T0/1-496 MSGSDAGLEE EPELSITLTL RMLMHGKEVG SIIGKKGETV KRIREQPWLG BACU005548/1-403 MSGSDAGLEE EPELSITLTL RMLMHGKEVG SIIGKKGETV KRIRE----- 51 100 ENSTTRP00000001360/1-416 ---------- ------EPRC LALVLHPQSS ARITISEGSC PERITTITGS ENSBTAP00000024779/1-403 ---------- ---------- -------QSS ARITISEGSC PERITTITGS bmy_11544T0/1-496 PGEWRGRQVL GQEAEKEPRC LALVLHPQSS ARITISEGSC PERITTITGS BACU005548/1-403 ---------- ---------- -------QSS ARITISEGSC PERITTITGS 101 150 ENSTTRP00000001360/1-416 TAAVFHAVSM IAFKLDE--- ---------- ---------- ---------- ENSBTAP00000024779/1-403 TAAVFHAVSM IAFKLDE--- ---------- ---------- ---------- bmy_11544T0/1-496 TAAVFHAVSM IAFKLDEVCG CLRGWGPRVV PREEQDSDST EWLRVGWKAK BACU005548/1-403 TAAVFHAVSM IAFKLDE--- ---------- ---------- ---------- 151 200 ENSTTRP00000001360/1-416 ---------- ---------- ---------- ---------- ---DLCAAPA ENSBTAP00000024779/1-403 ---------- ---------- ---------- ---------- ---DLCAAPA bmy_11544T0/1-496 LRAGFSHWSG TRAGFPPSSP SRKVLQGRGS SRGMHGQPSL PAQDLCAAPA BACU005548/1-403 ---------- ---------- ---------- ---------- ---DLCAAPA 201 250 ENSTTRP00000001360/1-416 NGGNVSRPPV TLRLVIPASQ CGSLIGKAGT KIKEIREVRK GYHPKRVLPS ENSBTAP00000024779/1-403 NGGNVSRPPV TLRLVIPASQ CGSLIGKAGT KIKEIRE--- ---------- bmy_11544T0/1-496 NGGNVSRPPV TLRLVIPASQ CGSLIGKAGT KIKEIRE--- ---------- BACU005548/1-403 NGGNVSRPPV TLRLVIPASQ CGSLIGKAGT KIKEIRE--- ---------- 251 300 ENSTTRP00000001360/1-416 VSRGDLGLQL PVVGSSEPRC SGLWELKVAP VLCLQTTGAQ VQVAGDLLPN ENSBTAP00000024779/1-403 ---------- ---------- ---------- -----TTGAQ VQVAGDLLPN bmy_11544T0/1-496 ---------- ---------- ---------- -----TTGAQ VQVAGDLLPN BACU005548/1-403 ---------- ---------- ---------- -----TTGAQ VQVAGDLLPN 301 350 ENSTTRP00000001360/1-416 STERAVTVSG VPDAIILCVR QICAVILX-- XXXXXXXXXX XXXXXXXXXX ENSBTAP00000024779/1-403 STERAVTVSG VPDAIILCVR QICAVILESP PKGATIPYHP SLSLGTVLLS bmy_11544T0/1-496 STERAVTVSG VPDAIILCVR QICAVILE-- ---------- ---------- BACU005548/1-403 STERAVTVSG VPDAIILCVR QICAVILESP PKGATIPYHP SLSLGTVLLS 351 400 ENSTTRP00000001360/1-416 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX GLDPGTQTSS ENSBTAP00000024779/1-403 TNQGFSVQGQ YGTVTPAEVT KLQQLSGHAV PFASPSMVP- GLDPSTQTSS bmy_11544T0/1-496 ---GFSVQGQ YGAVTSAEVT KLQQLSGHAV PFASPSMVPA GLDPGTQTSS BACU005548/1-403 TNQGFSVQGQ YGAVTSAEVT KLQQLSGHAV PFASPSMVP- GLDPGTQTSS 401 450 ENSTTRP00000001360/1-416 QEFLVPND-- -------LIG CVIGRQGSKI SEIRQMSGAH IKIGNQAEGA ENSBTAP00000024779/1-403 QEFLVPND-- -------LIG CVIGRQGSKI SEIRQMSGAH IKIGNQAEGA bmy_11544T0/1-496 QEFLVPNDVR TGWGGLRLIG CVIGRQGSKI SEIRQMSGAH IKIGNQAEGA BACU005548/1-403 QEFLVPND-- -------LIG CVIGRQGSKI SEIRQMSGAH IKIGNQAEGA 451 500 ENSTTRP00000001360/1-416 GERHVTITGS PVSIALAQYL ITACLETAKS TSGGTPGSAP TDLPAPFSPP ENSBTAP00000024779/1-403 GERHVTITGS PVSIALAQYL ITACLETAKS TSGGTPGSAP TDLPAPFSPP bmy_11544T0/1-496 GERHVTITGS PVSIALAQYL ITACLETAKS TSGGTPGSAP TDLPTPFSPP BACU005548/1-403 GERHVTITGS PVSIALAQYL ITACLETAKS TSGGTPGSAP TDLPAPFSPP 501 550 ENSTTRP00000001360/1-416 LTALPTAPPG LLGTPYAISL SNFIGLKPVP FLALPPASPG PPPGLAAYTA ENSBTAP00000024779/1-403 LTALPTAPPG LLGTPYAISL SNFIGLKPVP FLALPPASPG PPPGLAAYTA bmy_11544T0/1-496 LTALPTAPPG LLGTPYAISL SNFIGLKPVP FLALPPASPG PPPGLAAYTA BACU005548/1-403 LTALPTAPPG LLGTPYAISL SNFIGLKPVP FLALPPASPG PPPGLAAYTA 551 600 ENSTTRP00000001360/1-416 KMAAANGSKK AERQKFSPY ENSBTAP00000024779/1-403 KMAAANGSKK AERQKFSPY bmy_11544T0/1-496 KMAAANGSKK AERQKFSPY BACU005548/1-403 KMAAANGSKK AERQKFSPY