KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:24:02 2014 Check: 00 .. Name: ENSTTRP00000003290/1-408 Len: 640 Check: 2954 Weight: 1.00 Name: ENSBTAP00000024787/1-501 Len: 640 Check: 6801 Weight: 1.00 Name: BACU005549/1-622 Len: 640 Check: 2544 Weight: 1.00 Name: bmy_11547T0/1-372 Len: 640 Check: 9345 Weight: 1.00 // 1 50 ENSTTRP00000003290/1-408 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024787/1-501 MWGCQDPLSR PPGSGETPMS RSWLVSPLAA PPFFTVRCSH STGP---TGW BACU005549/1-622 -------MPV GPTVVQTSMT RSQVALLGLG LLFMLLLYVG LPGPPEQTSW bmy_11547T0/1-372 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000003290/1-408 ---------- ---------- -------MAS KRR------- ---------- ENSBTAP00000024787/1-501 MWCCSTER-- ---------- ------PLAP GRG------- ------SSWA BACU005549/1-622 LWGDPNVTIL AGLIPGSSPI FYREVLPLHR ARRVDVVLLH GKAFNSRTWE bmy_11547T0/1-372 ---------- ---------- -------MAS KRR------- ---------- 101 150 ENSTTRP00000003290/1-408 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000024787/1-501 HCSCWHRGAT GLWPLTFQVG SPRQGSAMAS EGR------- ---------- BACU005549/1-622 QLGTLQLLAQ RGYRAVALDL PGFGNSAPSK EARTEAGRAQ LLERVLQDLE bmy_11547T0/1-372 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000003290/1-408 ---------- ---------- -EGEH----- ---------- ---------- ENSBTAP00000024787/1-501 ---------- ---------- -EGEH----- ---------- ---------- BACU005549/1-622 VQNVVLVSPS LSGCYALPFL MQGHHQLHGF VPIAPASTQN YTQEQFQAVK bmy_11547T0/1-372 ---------- ---------- -EGEH----- ---------- ---------- 201 250 ENSTTRP00000003290/1-408 -PSVTL---- ---------- ---------- ---------- -------FRQ ENSBTAP00000024787/1-501 -PSVTL---- ---------- ---------- ---------- -------FRQ BACU005549/1-622 TPTLILYGEL DRVLAWESLR QLRHLPNHSV VKLRDAGHAC YLHKPQDFHL bmy_11547T0/1-372 -PSVTL---- ---------- ---------- ---------- -------FRQ 251 300 ENSTTRP00000003290/1-408 YLRIRTVQPE PDYGAAVAFL EERACQLGLG CQKVEVAPGR VVTVLTWPGT ENSBTAP00000024787/1-501 YLRIRTLQPE PDYGAAVAFF EERALQLGLG CQKVEVAPGR VVTVLTWPGT BACU005549/1-622 YLRIRTVQPE PDYGENAAVP GGPV------ -----VAAGR VVTVLTWPGT bmy_11547T0/1-372 YLRIRTVQPE PDYGAAVAFL EERACQLGLG CQKVEVAAGR VVTVLTWPGT 301 350 ENSTTRP00000003290/1-408 NPRLSSLLLN SHTDVVPVFK EHWSHDPFEA FKDADGYIYG RGAQDMKCVS ENSBTAP00000024787/1-501 NPKLSSVLLN SHTDVVPVFQ EYWSHDPFEA FKDADGYIYG RGAQDMKCVS BACU005549/1-622 NPRLSSLLLN SHTDVVPVFK EHWSHDPFEA FKDADGYIYG RGAQDMKCVS bmy_11547T0/1-372 NPRLSSLLLN SHTDVVPVFK EHWSHDPFEA FKDADGYIYG RGAQDMKCVS 351 400 ENSTTRP00000003290/1-408 IQYLEAVRRL KVEGHHFPRT IHMTFVPDEE IGGHQGMELF VKRPEFQALR ENSBTAP00000024787/1-501 IQYLEAVRRL KAEGHHFPRT IHLTFVPDEE IGGHQGMELF VKRPEFQALR BACU005549/1-622 IQYLEAVRRL KAEGHHFPRT IHLTFVPDEE IGGHQGMELF VKQPEFQALR bmy_11547T0/1-372 IQ-------- ---------T IHMTFVPDEE IGGHQGMELF VKRPEFQALR 401 450 ENSTTRP00000003290/1-408 AGFALDEGLA NPTDAFTVFY SERSPWXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000024787/1-501 AGFALDEGLA NPTDAFTVFY SERSPWWVRV TSTGKPGHGS RFIEDTAAEK BACU005549/1-622 AGFALDEGLA NPTDAFTVFY SERSPWWVQV TSTGKPGHGS RFIEDTAAEK bmy_11547T0/1-372 AGFALDEG-- ---------- -------VQV TSTGKPGHGS RFIEDTAAEK 451 500 ENSTTRP00000003290/1-408 XHKVVSSILA FREKERQRLQ SDPQLKQGAV TSVNLTKLEG GVAYNVVPAT ENSBTAP00000024787/1-501 LHKVVSSILA FREKERQRLQ SDPQLKEGAV TSVNLTILEG GVAYNVVPAT BACU005549/1-622 LHKVVSSILA FREKERQRLQ SDPQLKQGAV TSVNLTKLEG GVAYNVVPAT bmy_11547T0/1-372 LHKVVSSILA FREKERQRLQ SDPQLKQGAV TSVNLTKLEG GVAYNVVPAT 501 550 ENSTTRP00000003290/1-408 MSASFDFRVA PDVDLKAFEE QLQGWCQAAG EGVTFEFAQK WTEPRVTSTD ENSBTAP00000024787/1-501 MSASFDFRVA PDVDLKAFEG QLQDWCQAAG EGVTFEFAQK WTEPQVTPTD BACU005549/1-622 MSASFDFRVA PDVDLKAFEE QLQGWCQAAG EGVTFEFAQK WTEPRVTSTD bmy_11547T0/1-372 MSASFDFRVA PDVDLKAFEE QLQGWCQAAG EGVTFEFAQK WTEPRVTSTD 551 600 ENSTTRP00000003290/1-408 DSDPWWAAFS GVCKDMNLTL EPEIFPAATD SRYLRAVGVP ALGFSPMNHT ENSBTAP00000024787/1-501 DSDPWWAAFS GACKDMNLTL EPEIFPAATD SRYLRAVGVP ALGFSPMNRT BACU005549/1-622 DSDPWWAAFS GVCKDMNLTL EPEIFPAATD SRYLRAVGVP ALGFSPMNHT bmy_11547T0/1-372 DSDPWWAAFS GVCKDMNLTL EPEIFPAATD SRYLRAVGVP ALGFSPMNHT 601 650 ENSTTRP00000003290/1-408 PVLLHDHDER LHEAMFLRGI DIYTRLLPAL ASVPALPSES ENSBTAP00000024787/1-501 PILLHDHDER LHEAVFLRGV DIYTRLLPAL ASVPVLPSES BACU005549/1-622 PVLLHDHDER LHEAVFLHGI DIYTRLLPAL ASVPTLPSES bmy_11547T0/1-372 PVLLHDHDER LHEAVFLHGI DIYTRLLPAL ASVPTLPSES