KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:24:05 2014 Check: 00 .. Name: ENSP00000407487/1-944 Len: 955 Check: 5059 Weight: 1.00 Name: ENSTTRP00000007479/1-940 Len: 955 Check: 4649 Weight: 1.00 Name: ENSBTAP00000024799/1-929 Len: 955 Check: 1937 Weight: 1.00 Name: bmy_10339T0/1-886 Len: 955 Check: 6612 Weight: 1.00 Name: BACU016073/1-929 Len: 955 Check: 1045 Weight: 1.00 // 1 50 ENSP00000407487/1-944 MTVSGPGTPE PRPATPGASS VEQLRKEGNE LFKCGDYGGA LAAYTQALGL ENSTTRP00000007479/1-940 MTVSGPGTPE PRPADPGASS VEQLRKDGNE LFKCGDYEGA LTAYTQALGL ENSBTAP00000024799/1-929 ---------- -----MTASS VEQLRKDGNE LFKCGDYEGA LTAYTQALGL bmy_10339T0/1-886 ---------- -----MTASS VEQLRKDGND LFKCGDYEGA LTAYTQALGL BACU016073/1-929 ---------- -----MTASS VEQLRKDGNE LFKCGDYEGA LTAYTQALGL 51 100 ENSP00000407487/1-944 DATPQDQAVL HRNRAACHLK LEDYDKAETE ASKAIEKDGG DVKALYRRSQ ENSTTRP00000007479/1-940 GATPQDQAIL HRNRAACHLK LEDYDKAETE ASKAIEKDGG DVKALYRRSQ ENSBTAP00000024799/1-929 GATPQDQAIL HRNRAACHLK LEDYEKAETE ATKAIEKDGG DIKALYRRSQ bmy_10339T0/1-886 GATPQDQAIL HRNRAACHLK LEDYDKAETE ASKAIEKDGG DVKALYRRSQ BACU016073/1-929 GATPQDQAIL HRNRAACHLK LEDYDKAETE ASKAIEKDGG DVKALYRRSQ 101 150 ENSP00000407487/1-944 ALEKLGRLDQ AVLDLQRCVS LEPKNKVFQE ALRNIGGQIQ EKVRYMSSTD ENSTTRP00000007479/1-940 ALEKLGRLDQ AVLDLQRCVS LEPKNKVFQE ALRNIAGQIQ EKVSYMSSTD ENSBTAP00000024799/1-929 ALEKLGRLDQ AVLDLQRCVS LEPKNKVFQE ALRNIAGQIQ EKVRYMSSTD bmy_10339T0/1-886 ALEKLGRLDQ AVLDLQRCVS LEPKNKVFQE ALRNIAGQIQ EKVRYMSLTD BACU016073/1-929 ALEKLGRLDQ AVLDLQRCVS LEPKNKVFQE ALRNIAGQIQ EKVRYMSSTD 151 200 ENSP00000407487/1-944 AKVEQMFQIL LDPEEKGTEK KQKASQNLVV LAREDAGAEK IFRSNGVQLL ENSTTRP00000007479/1-940 AKVEQMFQIL LDPQEKGTEK KQKASQNLVV LAREDAGAEK IFRSNGVQLL ENSBTAP00000024799/1-929 AKVEQMFQIL LDPQEKGTEK KQKASQNLVV LAREDAGAEK IFRSNGVQLL bmy_10339T0/1-886 AKVEQMFQIL LDPQEKGTEK KQK------- ---------- --------LL BACU016073/1-929 AKVEQMFQIL LDPQEKGTEK KQKASQNLVV LAREDAGAEK IFRSNGVQLL 201 250 ENSP00000407487/1-944 QRLLDMGETD LMLAALRTLV GICSEHQSR- ---------- TVATLSILGT ENSTTRP00000007479/1-940 QRLLDTGEPD LMLAALRTLV GICSEHQSR- ---------- TVATLSVLGT ENSBTAP00000024799/1-929 QRLLDTGEPD LMLAALRTLV GICSEHQSR- ---------- TVATLSVLGT bmy_10339T0/1-886 QRLLDTGEPD LMLAALRTLV GICSEHQSRV GGAKGLVTAS TVVTLSVLGT BACU016073/1-929 QRLLDTGEPD LMLAALRTLV GICSEHQSR- ---------- TVATLSVLGT 251 300 ENSP00000407487/1-944 RRVVSILGVE SQAVSLAACH LLQVMFDALK EGVKKGFRGK EGAIIVDPAR ENSTTRP00000007479/1-940 RRVVSILGVE NQAVSLAACH LLQVMFDALK EGVKKGFRGK EGAIIVDPAR ENSBTAP00000024799/1-929 RRVVSMLGVE NQAVSLAACH LLQVMFDALK EGVKKGFRGK EGAIIVDPAR bmy_10339T0/1-886 RRVVSILGVE NQAVSLAACH LLQVMFDALK EGVKKGFRGK EGAIIVDPAR BACU016073/1-929 RRVVSILGVE NQAVSLAACH LLQVMFDALK EGVKKGFRGK EGAIIVDPAR 301 350 ENSP00000407487/1-944 ELKVLISNLL DLLTEVGVSG QGRDNALTLL IKAVPRKSLK DPNNSLTLWV ENSTTRP00000007479/1-940 ELKVLISNLL ELLTEVGVSG QGRDSALTLL IKVVPRKSPK DPNNSLTLWV ENSBTAP00000024799/1-929 ELKVLISNLL ELLTEVGVSG QGRDNALTLL IKVVPRKSPK DPNNSLTLWV bmy_10339T0/1-886 ELKVLISNLL ELLTEVGVSG QGRDS----- ---------- ---------- BACU016073/1-929 ELKVLISNLL ELLTEVGVSG QGRDSALTLL IKVVPRKSPK DPNNSLTLWV 351 400 ENSP00000407487/1-944 IDQGLKKILE VGGSLQDPPG ELAVTANSRM SASILLSKLF DDLKCDAERE ENSTTRP00000007479/1-940 IDQGLKKILE VGGSVQYPPG ELTVTANSRM SASILLSKLF DDLKCDAERE ENSBTAP00000024799/1-929 IDQGLKKILE VGGSVQDPPG ELTVTANSRM SASILLSKLF DDLKCDAERE bmy_10339T0/1-886 ----LKKILE VGGSVQDPPG ELTVTADSRM SASILLSKLF DDLKCDAERE BACU016073/1-929 IDQGLKKILE VGGSVQDPPG ELTVTANSRM SASILLSKLF DDLKCDAERE 401 450 ENSP00000407487/1-944 NFHRLCENYI KSWFEGQGLA GKLRAIQTVS CLLQGPCDAG NRALELSGVM ENSTTRP00000007479/1-940 NFHRLCENYI KSWFE-QRLA GKLRS--QVS CLLXXXXXXX XXXXXXSGVM ENSBTAP00000024799/1-929 NFHRLCENYI KSWFEGHGLA GKLRAIQTVS CLLQGPCDAG NRALELNGVM bmy_10339T0/1-886 NFHRLCENYI KSWFEGQGLA GKLRALQTVS CLLQGPCDAG NRALELNGVM BACU016073/1-929 NFHRLCENYI KSWFEGQGLA GKLRALQTVS CLLQGPCDAG NRALELNGVM 451 500 ENSP00000407487/1-944 ESVIALCASE QEEEQLVAVE ALIHAAGKAK RASFITANGV SLLKDLYKCS ENSTTRP00000007479/1-940 ESVIALCASE QEEEQLVAVE ALIHAAGKAR RASFITANGV SLLKDLYRRG ENSBTAP00000024799/1-929 ESVIALCASE QEEEQLVAVE TLIHAAGKAK RASFITANGV SLLKDLYKRS bmy_10339T0/1-886 ESVMALCASE QEEEQLVAVE ALIHAAGKAK RASFITANGV SLLKDLYRRG BACU016073/1-929 ESVIALCASE QEEEQLVAVE ALIHAAGKAK RASFITANGV SLLKDLYRRG 501 550 ENSP00000407487/1-944 EKDSIRIRAL VGLCKLGSAG GTDFSMKQFA EGSTLKLAKQ CRKWLCNDQI ENSTTRP00000007479/1-940 EKDSIRIRAL VGLCKLGSAG GTDFSMKQFA EGSTLKLAKQ CRKWLCNDQI ENSBTAP00000024799/1-929 EKDSIRIRAL VGLCKLGSAG GTDFSMKQFA EGSTLKLAKQ CRKWLCNDQM bmy_10339T0/1-886 EKDSIRIRAL VGLCKLGSAG GTDFSMKQFA EGSTLKLAKQ CRKWLCNDQI BACU016073/1-929 EKDSIRIRAL VGLCKLGSAG GTDFSMKQFA EGSTLKLAKQ CRKWLCNDQI 551 600 ENSP00000407487/1-944 DAGTRRWAVE GLAYLTFDAD VKEEFVEDAA ALKALFQLSR LEERSVLFAV ENSTTRP00000007479/1-940 DAGTRRWAVE GLAYLTFDAD VKEEFVEDEA ALKALFQLSK SEERSVLFAV ENSBTAP00000024799/1-929 DVGTRRWAVE GLAYLTFDAD VKEEFVEDAA ALKALFQLSK SEERSVLFAV bmy_10339T0/1-886 DAGTRRWAVE GLAYLTFDAD VKEEFVEDEA ALKALFQLSK SEERSVLFAV BACU016073/1-929 DAGTRRWAVE GLAYLTFDAD VKEEFVEDEA ALKALFQLSK SEERSVLFAV 601 650 ENSP00000407487/1-944 ASALVNCTNS YDYEEPDPKM VELAKYAKQH VPEQHPKDKP SFVRARVKKL ENSTTRP00000007479/1-940 ASALVNCTNS YDYEEPDPKM VELAKYAKQH VPEQHPKDKP SFVRARVKKL ENSBTAP00000024799/1-929 ASALVNCTNS YDYEEPDPKM VELAKYAKQH VPEQHPKDKP SFVRARVKKL bmy_10339T0/1-886 ASALVNCTNS YDYEEPDPKM VELAKYAKQH VPEQHPKDKP SFVRARVKKL BACU016073/1-929 ASALVNCTNS YDYEEPDPKM VELAKYAKQH VPEQHPKDKP SFVRARVKKL 651 700 ENSP00000407487/1-944 LAAGVVSAMV CMVKTESPVL TSSCRELLSR VFLALVEEVE DRGTVVAQGG ENSTTRP00000007479/1-940 LAAGVVSAMT CMVKTESPVL TSSCRELLSR VFLALVEEFE DRGTVVAQGG ENSBTAP00000024799/1-929 LAAGVVSAMT CMVKTESPVL TSSCRELLSR VFLALVEEVE DRGTVVAQGG bmy_10339T0/1-886 LAAGVVSAMT CMVKTESPVL TSSCRELLSR VFLALVEESE DRGTVVAQGG BACU016073/1-929 LAAGVVSAMT CMVKTESPVL TSSCRELLSR VFLALVEESE DRGTVVAQGG 701 750 ENSP00000407487/1-944 GRALIPLALE GTDVGQTKAA QALAKLTITS NPEMTFPGER IYEVVRPLVS ENSTTRP00000007479/1-940 GKALLPLALE GTDVGQTKAA QALAKLTITS NPEMTFPGER IYEVVRPLVS ENSBTAP00000024799/1-929 GKALLPLALE GTDVGQTKAA QALAKLTITS NPEMTFPGER IYEVVRPLVS bmy_10339T0/1-886 GKALLPLALE GTDVGQMKAA QALAKLTITS NPEMTFPGER IYEVVRPLVS BACU016073/1-929 GKALLPLALE GTDVGQMKAA QALARLTITS NPEMTFPGER IYEVVRPLVS 751 800 ENSP00000407487/1-944 LLHLNCSGLQ NFEALMALTN LAGISERLRQ KILKEKAVPM IEGYMFEEHE ENSTTRP00000007479/1-940 LLHLNCSGLQ NFEALMALTN LAGISERLRQ KILKERAVPM IEGYMFEEHE ENSBTAP00000024799/1-929 LLHLNCSGLQ NFEALMALTN LAGISERLRQ KILKEKAVPM IEGYMFEEHE bmy_10339T0/1-886 LLHLNCSGLQ NFEALMALTN LAGISERLRQ KILKERAVPM IEGYMFEEHE BACU016073/1-929 LLHLNCSGLQ NFEALMALTN LAGISERLRQ KILKERAVPM IEGYMFEEHE 801 850 ENSP00000407487/1-944 MIRRAATECM CNLAMSKEVQ DLFEAQGNDR LKLLVLYSGE DDELLQRAAA ENSTTRP00000007479/1-940 MIRRAATECM CNLAMSTEVQ DLFEATGSDR LKLLVLYSGE DDELLRRAAA ENSBTAP00000024799/1-929 MLRRAATECM CNLAMSKEVQ DLFEATGNDR LKLLVLYSGE DDELLRRAAA bmy_10339T0/1-886 MIRRAATECM CNLAMSKEVQ DLFEATGSDR LKLLVLYSGE DDELLRRAAA BACU016073/1-929 MIRRAATECM CNLAMSKEVQ DLFEATGSDR LKLLVLYSGE DDELLRRAAA 851 900 ENSP00000407487/1-944 GGLAMLTSMR PTLCSRIPQV TTHWLEILQA LLLSSNQELQ HRGAVVVLNM ENSTTRP00000007479/1-940 GGLAMLTSMR PSLCSRIPQV TTH-LEILQA LLLSPNQELQ HWGAVVVLNM ENSBTAP00000024799/1-929 GGLAMLTSMR PSLCSRIPQV TTHWLEILQA LLLSPSQELQ HRGAVVVLNM bmy_10339T0/1-886 GGLAVLTSTR PSLCSRIPQV TTHWLEILQA LLLSPNQELQ HRGAVVVLNM BACU016073/1-929 GGLAVLTSTR PSLCSRIPQV TTHWLEILQA LLLSPNQELQ HRGAVVVLNM 901 950 ENSP00000407487/1-944 VEASREIAST LMESEMMEIL SVLAKGDHSP VTRAAAACLD KAVEYGLIQP ENSTTRP00000007479/1-940 VEASSEIAST LMESEMLEIL SVLAKGKESP VMRAAAACLG KAVEYGLIRP ENSBTAP00000024799/1-929 VEASREIAST LMESEVLEIL SVLAKDEETP VTRAATACLG KAVEYGLIKP bmy_10339T0/1-886 VEASSEIAST LMESEMLEIL SVLAKGKESP VTRAAAACLG KAVEYGLIRP BACU016073/1-929 VEASSEIAST LMESEMLEIL SVLAKGKESP VTRAAAACLR KAVEYGLIRP 951 1000 ENSP00000407487/1-944 NQDGE ENSTTRP00000007479/1-940 SQDGK ENSBTAP00000024799/1-929 SQDGR bmy_10339T0/1-886 SQDGK BACU016073/1-929 SQDGK