KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:24:06 2014 Check: 00 .. Name: ENSP00000263666/1-1066 Len: 1071 Check: 7439 Weight: 1.00 Name: ENSBTAP00000024807/1-1061 Len: 1071 Check: 6668 Weight: 1.00 Name: ENSTTRP00000002738/1-899 Len: 1071 Check: 6580 Weight: 1.00 Name: bmy_02949T0/1-643 Len: 1071 Check: 1121 Weight: 1.00 Name: BACU015126/1-724 Len: 1071 Check: 9802 Weight: 1.00 // 1 50 ENSP00000263666/1-1066 MGFELDRFDG DVDPDLKCAL CHKVLEDPLT TPCGHVFCAG CVLPWVVQEG ENSBTAP00000024807/1-1061 MGFELDRFDG DVDPDLKCAL CHKVLEDPLT TPCGHVFCAG CVLPWVVQEG ENSTTRP00000002738/1-899 ---------- ---------- ---------- ---------- ---------- bmy_02949T0/1-643 ---------- ---------- ---------- ---------- ---------- BACU015126/1-724 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000263666/1-1066 SCPARCRGRL SAKELNHVLP LKRLILKLDI KCAYATRGCG RVVKLQQLPE ENSBTAP00000024807/1-1061 SCPARCRGRL SAKELNHVLP LKRLILKLDI KCAHAARGCG QVVKLQQLPE ENSTTRP00000002738/1-899 ---------- ---KELHVLP LKRLILKLDF KCAHAARGCG RVVKLQQLPE bmy_02949T0/1-643 ---------- ---------- ---------- ---------- ---------- BACU015126/1-724 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000263666/1-1066 HLERCDFAPA RCRHAGCGQV LLRRDVEAHM RDACDARPVG RCQEGCGLPL ENSBTAP00000024807/1-1061 HLERCDFAPA RCRHAGCGQV LLRRDVEAHM RDACDARPVG RCQEGCGLPL ENSTTRP00000002738/1-899 HLERCDFAPA RCRHAGCGQV LLRRDVEAHM RDACDARPVG RCQEGCGLPL bmy_02949T0/1-643 ---------- ---------- ---------- ---------- ---------- BACU015126/1-724 ---------- ---------- ---------- ---------- ---------- 151 200 ENSP00000263666/1-1066 THGEQRAGGH CCARALRAHN GALQARLGAL HKALKKEALR AGKREKSLVA ENSBTAP00000024807/1-1061 TQGEQRAGGH CCARALRAHN AALQARLGAL HKALKKEALR AGKREKSLVA ENSTTRP00000002738/1-899 THGEQRAGGH CCARALRAHN GALQARLGAL HKALKKEALR AGKREKSLVA bmy_02949T0/1-643 ---------- ---------- ---------- ---------- ---------- BACU015126/1-724 ---------- ---------- ---------- ---------- ---------- 201 250 ENSP00000263666/1-1066 QLAAAQLELQ MTALRYQKKF TEYSARLDSL SRCVAAPPGG KGEETKSLTL ENSBTAP00000024807/1-1061 QLAAAQLELQ MTALRYQKKF TEYSARLDSL SRCVAPPPGG KGEETKSLTL ENSTTRP00000002738/1-899 QLAAAQLELQ MTALRYQKKF TEYSARLDSL SRCVATPPGG KGEETKSLTL bmy_02949T0/1-643 ---------- ---------- ---------- ---------- ---------- BACU015126/1-724 ---------- ---------- ---------- ---------- ---------- 251 300 ENSP00000263666/1-1066 VLHRDSGSLG FNIIGGRPSV DNHDGSSSEG IFVSKIVDSG PAAKEGGLQI ENSBTAP00000024807/1-1061 VLHRDSGSLG FNIIGGRPCV DNQDGSSSEG IFVSKIVDSG PAAKDGGLQI ENSTTRP00000002738/1-899 VLHRDSGSLG FNIIGGRPCV DNQDGSSTEG IFVSKIVDSG PAAKDGGLQI bmy_02949T0/1-643 ---------- ---------- ---------- ---------- ---------- BACU015126/1-724 ---------- ---------- ---------- ---------- ---------- 301 350 ENSP00000263666/1-1066 HDRIIEVNGR DLSRATHDQA VEAFKTAKEP IVVQVLRRTP RTKMFTPPSE ENSBTAP00000024807/1-1061 HDRIIEVNGK DLSRATHDQA VEAFKTAKEP IVVQVLRRTP RTKMFTPPSE ENSTTRP00000002738/1-899 HDRIIEVNGK DLSRATHDQA VEAFKTAKEP IVVQVLRRTP RTKMFTPPSE bmy_02949T0/1-643 ---------- ---------- ---------- ---------- ---------- BACU015126/1-724 ---------- ---------- ---------- ---------- ---MFTPPSE 351 400 ENSP00000263666/1-1066 SQLVDTGTQT DITFEHIMAL TKMSSPSPPV LDPYLLPEEH PSAHEYYDPN ENSBTAP00000024807/1-1061 SQMVDMGTQT DITFEHIMAL SKMSSPTPPV LDPYLLPEEH PSAHEYYDPN ENSTTRP00000002738/1-899 SQMVDTGTQT DITFEHIMAL TKMSSPTPPV LDPYLLPEEH PSAHEYYDPN bmy_02949T0/1-643 ---------- ---------- ---------- ---------- ---------- BACU015126/1-724 SQMVDTGTQT DITFEHIMAL TKMSSPTPPV LDPYLLPEEH PSAHEYYDPN 401 450 ENSP00000263666/1-1066 DYIGDIHQEM DREELELEEV DLYRMNSQDK LGLTVCYRTD DEDDIGIYIS ENSBTAP00000024807/1-1061 DYIAGIHQEM DREELELEEV DLYRMNSQDK LGLTVCYRTD DEDDIGIYIS ENSTTRP00000002738/1-899 DYIEGIHQEM EREELELEEV DLYRMNSQDK LGLTVCYRTD DEDDIGIYIS bmy_02949T0/1-643 ---------- ---------- ----MNSQDK LGLTVCYRTD DEDDIGIYIS BACU015126/1-724 DYIEGIHQEI DREELELEEV DLYRMNSQDK LGLTVCYRTD DEDDIGIYIS 451 500 ENSP00000263666/1-1066 EIDPNSIAAK DGRIREGDRI IQINGIEVQN REEAVALLTS EENKNFSLLI ENSBTAP00000024807/1-1061 EIDPNSIAAK DGRIREGDRI IQINGIEVQN REEAVALLTS EENKNFSLLI ENSTTRP00000002738/1-899 EIDPNSIAAK DGRIREGDRI IQINGIEVQN REEAVALLTS EDNKNFSLLI bmy_02949T0/1-643 EIDPNSIAAK DGRIREGDRI IQINGIEVQN REEAVALLTS EDNKNFSLLI BACU015126/1-724 EIDPNSIAAK DGRIREGDRI IQINGIEVQN REEAVALLTS EDNKNFSLLI 501 550 ENSP00000263666/1-1066 ARPELQLDEG WMDDDRNDFL DDLHMDMLEE QHHQAMQFTA SVLQQKKHDE ENSBTAP00000024807/1-1061 ARPELQLDEG WLDDDRNDFL DDLHMDMLEE QHHQAMQFTA SVLQQKKHEE ENSTTRP00000002738/1-899 ARPELQLDEG WMDDDRNDFL DDLHMDMLEE QHHQAMQFTA GVLQQKKHEE bmy_02949T0/1-643 ARPELQLDEG WMDDDRNDFL DDLHMDMLEE QHQQAMRFTA GALQQKKHEE BACU015126/1-724 ARPELQLDEG WMDDDRNDFL DDLHMDMLEE QHQQAMRFTA GALQQKKHEE 551 600 ENSP00000263666/1-1066 DGGTTDTATI LSNQHEKDSG VGRTDESTRN DESSEQENNG DDATASSNPL ENSBTAP00000024807/1-1061 DGGTTDTATI LSNQHEKDSG VGRTDESTRN DESSEQENNG DDAPAASPPL ENSTTRP00000002738/1-899 DGGTTDTATI LSNQHEKDSG VGRTDESTRN DESSEQENNG DDAPAASPPL bmy_02949T0/1-643 DGGTTDTATI LSNQHEKDSG VGRTDESTRN DESSEQENNG DDAPAASPPL BACU015126/1-724 DGGTTDTATI LSNQHEKDSG VGRTDESTRN DESSEQENNG DDAPAASPPL 601 650 ENSP00000263666/1-1066 AGQRKLTCSQ DTLGSGDLPF SNESFISADC TDADYLGIPV DECERFRELL ENSBTAP00000024807/1-1061 AGQRKLTCSQ DTLGSGDLPF SNESFISADC ADADYLGIPV DECERFRELL ENSTTRP00000002738/1-899 AGQRKLTCSQ DTLGSSDLPF SNESFISADC ADADYLGIPV DECERFRELL bmy_02949T0/1-643 AGQRKLTCSQ DTLGSGDLPF SNESFISADC ADADYLGIPV DECERFRELL BACU015126/1-724 AGQRKLTCSQ DTLGSGDLPF SNESFISADC ADADYLGIPV DECERFRELL 651 700 ENSP00000263666/1-1066 ELKCQVKSAT PYGLYYPSGP LDAGKSDPES VDKELELLNE ELRSIELECL ENSBTAP00000024807/1-1061 ELKCQVKSAG PYGLYYPGST LDASKSDPES VDKELELLNE ELRSIELECL ENSTTRP00000002738/1-899 ELKCQVKSAS PYGLYYPGSP LDASKSDPES VDKELELLNE ELRSIELECL bmy_02949T0/1-643 ELKCQVKSAS PYGLYYPGSP LDASKSDPES VDKELELLNE ELRSIELECL BACU015126/1-724 ELKCQVKSAS PYGLYYPGSP LDASKSDPES VDKELELLNE ELRSIELECL 701 750 ENSP00000263666/1-1066 SIVRAHKMQQ LKEQYRESWM LHNSGFRNYN TSIDVRRHEL SDITELPEKS ENSBTAP00000024807/1-1061 SIVRAHKMQQ LKEQFREPWM LHNSGFRNYN TSVDVRRREL ADITELPEKS ENSTTRP00000002738/1-899 SIVRAHKMQQ LKEQYREPWM LHNSGFRNYN TSVDVRRREL SDITELPEKS bmy_02949T0/1-643 SIVRAHKMQQ LKEQYREPWM LHNSGFRNYN TSVDVRRREL SDITELPEKS BACU015126/1-724 SIVRAHKMQQ LKEQYREPWM LHNSGFRNYN TSVDVRRREL SDITELPEKS 751 800 ENSP00000263666/1-1066 DKDSSSAYNT GESCRSTPLT LEISPDNSLR RAAEGISCPS SEGAVGTTEA ENSBTAP00000024807/1-1061 DKDSSSAYNT GESCRSTPLT LEMSPDNSLR RAAEGE---- -----GAAEA ENSTTRP00000002738/1-899 DKDSSSAYNT GESCRSTPLT LEMSPDNSLR RAAEGVGGPG GEGAAGTTEA bmy_02949T0/1-643 DKDSSSAYNT GESCRSTPLT LEMSPDNSLR RAAEGVGGPG SEGAAGTAEA BACU015126/1-724 DKDSSSAYNT GESCRSTPLT LEMSPDNSLR RAAEGVGGPG GDGAAGTTEA 801 850 ENSP00000263666/1-1066 YGPASKNLLS ITEDPEVGTP TYSPSLKELD PNQPLESKER RASD----GS ENSBTAP00000024807/1-1061 YGPSPKNLLS ITEDSEGGSP NYSPSPKELD PSPAPESKER KPSDEGGGGS ENSTTRP00000002738/1-899 YGPSPRNLLS ITEDPEVGSP DYSPSPEELD PSQALEGKER KPSDD---GS bmy_02949T0/1-643 YGPSPKNLLS ITEDPEVGSP DYSPSPEELD PSQALEGKER KPSD----GS BACU015126/1-724 FGPSPKNLLS ITEDPEVGSP DYSPSPEELD PSQALEGKER KPSD----GS 851 900 ENSP00000263666/1-1066 RSPTPSQKL- GSAYLPSYHH SPYKHAHIPA HAQHYQSYMQ LIQQKSAVEY ENSBTAP00000024807/1-1061 GSPTPGAKL- GGSYLPPFPH SPYKHAHIPA HAQHYQSYMQ LIQQKSAVEY ENSTTRP00000002738/1-899 GSPTPSQKLG GGSYLSPFPH SPYKHAHIPA HAQHYQSYMQ LIQQKSAVEY bmy_02949T0/1-643 GSPTPSQKLG GGSYLSPFPH SPYKHAHIPA HAQHYQSYMQ LIQQKSAVEY BACU015126/1-724 GSPTPSQQLG GGSYLSPFPH SPYKHAHIPA HAQHYQSYMQ LIQQKSAVEY 901 950 ENSP00000263666/1-1066 AQSQMSLVSM CKDLSSPTPS EPRMEWKVKI RSDGTRYITK RPVRDRLLRE ENSBTAP00000024807/1-1061 AQSQMSLVSM CKDLNSANQS EPRMEWKVKI RSDGTRYITK RPVRDRLLRE ENSTTRP00000002738/1-899 AQSQMSLVSM CKDLNSANQS EPRME-KVKI RSDGTRYITK RPVRDRLLRE bmy_02949T0/1-643 AQSQMSLVSM CKDLNSANQS EPRMEWKVKI RSDGTRYITK RPVRDRLLRE BACU015126/1-724 AQSQMSLVSM CKDLNSANQS EPRMEWKVKI RSDGTRYITK RPVRDRLLRE 951 1000 ENSP00000263666/1-1066 RALKIREERS GMTTDDDAVS EMKMGRYWSK EERKQHLVKA KEQRRRREFM ENSBTAP00000024807/1-1061 RALKIREERS GMTTDDDAVS ELKMGRYWSK EERKQHVVRA KEQRRRREFM ENSTTRP00000002738/1-899 RALRIREERS GMTTDD---- ---------- ---------- ---------- bmy_02949T0/1-643 RALKIREERS GMTTDDDAVS ELKMGRYWSK EERKQHVVKA KEQRRRREFM BACU015126/1-724 RALKIREERS GMTTDDDAVS ELKMGRYWSK EERKQHVVKA KEQRRRREFM 1001 1050 ENSP00000263666/1-1066 MQSRLDCLKE QQAADDRKEM NILELSHKKM MKKRNKKIFD NWMTIQELLT ENSBTAP00000024807/1-1061 MQSRLDCLKE QQGADDRKEM NILELSHKKM MKKRNKKIFD NWMTIQELLT ENSTTRP00000002738/1-899 ---------- ---------- ---------- ---------- ---------- bmy_02949T0/1-643 MQSRLDCLKE QQGADDRKEM NILELSHKKM MKKRNKKIFD NWMTIQELLT BACU015126/1-724 MQSRLDCLKE QQGADDRKEM NILELSHKKM MKKRNKKIFD NWMTIQELLT 1051 1100 ENSP00000263666/1-1066 HGTKSPDGTR VYNSFLSVTT V ENSBTAP00000024807/1-1061 HGAKSPDGTR VYNSFLSVTT V ENSTTRP00000002738/1-899 ---------- ---------- - bmy_02949T0/1-643 HGTKSPDGTR VYNSFLSVTT V BACU015126/1-724 HGTKSPDGTR VYNSFLSVTT V