KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:24:10 2014 Check: 00 .. Name: ENSP00000379090/1-933 Len: 985 Check: 3215 Weight: 1.00 Name: ENSBTAP00000024829/1-834 Len: 985 Check: 9954 Weight: 1.00 Name: ENSTTRP00000013231/1-945 Len: 985 Check: 5661 Weight: 1.00 Name: bmy_11148T0/1-606 Len: 985 Check: 4458 Weight: 1.00 Name: BACU020154/1-960 Len: 985 Check: 2601 Weight: 1.00 // 1 50 ENSP00000379090/1-933 MFWKFDLNTT SHVDKLLDKE HVTLQELMDE DDILQECKAQ NQKLLDFLCR ENSBTAP00000024829/1-834 MFWKFDLSAM SHVDKLLDKE GVTLRELMDG EDILQECKAQ NRKLLDFLCR ENSTTRP00000013231/1-945 MFWKFDLSTT SHVDKLLDKE DVTLRELMDE DDILQECKAQ NRKLLDFLCR bmy_11148T0/1-606 ---------- ---------- ---------- ---------- ---------- BACU020154/1-960 MFWKFDLNTT SHVNKLLDKE DVTLRELMDE DDILQECKAQ NRKLLDFLCR 51 100 ENSP00000379090/1-933 QQCMEELVSL ITQDPPLDME EKVRFKYPNT ACELLTCDVP QISDRLGGDE ENSBTAP00000024829/1-834 RQSMEELVGL VTQDPALDLE ERARFKYPNT ACELLTCDVP QINDRLGGDE ENSTTRP00000013231/1-945 QQSMEELVSL VTQDPALGVE EKVRFKYPNT ACELLTCDVP QISDRLGGDE bmy_11148T0/1-606 ---MEELVSL VTQDPALDME EKVHFKYPNT ACELLPCDVP QISDWLGGDE BACU020154/1-960 QQSMEELVSL VTQDPAPDME EKVRFKYPNT ACELLTCDVP QISDRLGGDE 101 150 ENSP00000379090/1-933 SLLSLLYDFL DHEPPLNPLL ASFFSKTIGN LIARKTEQVI TFLKKKDKFI ENSBTAP00000024829/1-834 TLLNVLYNFL DREPPLNPLL ASFFSKTIGN LIARKTEQVI AFLRKKDKFI ENSTTRP00000013231/1-945 TLLNLLYDFL NREPPLNPLL ASFFSKTIGS LIARRTAQVI VFLRKKDKFI bmy_11148T0/1-606 TLLNLLYDFL NREPPLSPLL ASFFSKTIGS LVARRTEQVI VFLRKKDKFL BACU020154/1-960 TLLNLLYDFL NREPPLSPLL ASFFSKTIGS LIARRTEQVI VFLRKKDKFI 151 200 ENSP00000379090/1-933 SLVLKHIGTS ALMDLLLRLV SCVEPAGLRQ DVLHWLNEEK VIQRLVELIH ENSBTAP00000024829/1-834 SLVLKHIGTS ALMDLLLRLV SCVEPVGLRQ EVLHWLNEEK TIQRLVELIH ENSTTRP00000013231/1-945 SLLLKHIGTS ALMDLLLRLV SCVEPAGLRQ EVLHWLNEEK LIQRLVELIH bmy_11148T0/1-606 SLVLKHIGTS ALMDLLLHLV SCVEPAGLWQ EVLHWLNEEK IIQRLEELIH BACU020154/1-960 SLVLKHIGTS ALMDLLLRLV SCVEPAGLRQ EVLHWLNEEK IIQRLVELIH 201 250 ENSP00000379090/1-933 PSQDEDRQSN ASQTLCDIVR LGRDQGSQLQ EALEPDPLLT ALESRQDCVE ENSBTAP00000024829/1-834 PSQDEDRQSN ASQTLCDIIR LGREQGSQLL EAPQPDPLLT VLES-QECVE ENSTTRP00000013231/1-945 PSQDEDRQSN ASQTLCDIVR LGREQGSPLQ EAPEPDPLLM ALES-QDCVE bmy_11148T0/1-606 VSQDEDRQSN ASQALCDIVR LGREQGSQLQ EAPEPDPLLT VLES-QDCMQ BACU020154/1-960 PSQDEDRQSN ASQTLCDIVR LGREQGSQLQ EAPEPDPLLT VLES-QGCVE 251 300 ENSP00000379090/1-933 QLLKNMFDGD RTESCLVSGT QVLLTLLETR RVGTEGLVDS FSQGLERSYA ENSBTAP00000024829/1-834 QLLRNMFDGV QTELCLVSGT QVLLTLLEPR RAGSEGLLDS CSQGLDRPCT ENSTTRP00000013231/1-945 RLLRNMFDGA QTELCLVSGT QVLLTLLEPR RAGXXXXXXX XXXXXXXXXX bmy_11148T0/1-606 QLLKNMSDGA QTELCLVSGT QVLLTLLKPR RAGMEGLLDS CSPGLDRLCA BACU020154/1-960 QLLRNMFDGA QTELCLVSGT QVLLSLLEPR RAGMEGLLDS CSQGLDRLCA 301 350 ENSP00000379090/1-933 VSSSVLHGIE PRLKDFHQLL LNPPKKKAIL TTIGVLEEPL GNARLHGARL ENSBTAP00000024829/1-834 VSPGVLRGIE PRLKDFHQLL LSPPKKAAIL TTVGVLEEPL GNARLHSARL ENSTTRP00000013231/1-945 XXXXXXXXXX XXXXXXXXXX XXXXXKAAIL TTIGVLEEPL GNARLHGARL bmy_11148T0/1-606 IGSGILRGIE PWLKGFHQLL LSPPKKTAIL TTIGVLEEPL GKARLHGAHL BACU020154/1-960 VSSGVLRGIE PRLKDFHQLL LSPPKKAAIL TTIGVLEEPL GKARLHGARL 351 400 ENSP00000379090/1-933 MAALLHTNTP SINQELCRLN TMDLLLDLFF KYTWNNFLHF QVELCIAAIL ENSBTAP00000024829/1-834 VAALLHTGTP SINQELCRLD TMGLLLDLFF KYTWNNFLHL QVELCIAAIL ENSTTRP00000013231/1-945 VAALLHTNTP SINQELCRLN TMGLLLDLFV KYAWNNFLHF QVELCIAAIL bmy_11148T0/1-606 VAALLHTDMP STNQELCRLN TMGLLLDLFV KYSCNNFLHF QVELCMAAIL BACU020154/1-960 VAALLHTHTP SINQELCRLN TMGLLLDLFV KYAWNNFLHL QVELCIAAIL 401 450 ENSP00000379090/1-933 SHAAREERTE ASGSESRVEP PHENGNRSLE TPQPAASLPD NTMVTHLFQK ENSBTAP00000024829/1-834 SHAAREDRAA ASGPEDALEP PPSSGDP--A APQPASSLPE GTMVTHLFQK ENSTTRP00000013231/1-945 SHSAREDRAV ASGPEGAVEP LPSSGDP--E TPRPAASRPE STMVTHLFQK bmy_11148T0/1-606 SHSAREDRAV ASGPEDGVEP PPSIGDP--E TPQPAAGRPE STMVTHLFQK BACU020154/1-960 SHAAREDRAV TSGPEGGVEP PPSSGDP--E TPQPAASRPE STMVTHLFQK 451 500 ENSP00000379090/1-933 CCLVQRILEA WEANDHTQAA GGMRRGNMGH LTRIANAVVQ NLERGPVQTH ENSBTAP00000024829/1-834 CCLVQRILEA WEANDRTQAA GGMRRGNMGH LTRIANAVVQ NLEGGPLQSQ ENSTTRP00000013231/1-945 CCLVQRILEA WEANDHTQAA GGMRRGNMGH LTRIANAVVQ SLEGGPVQTQ bmy_11148T0/1-606 CCLVQRILEA WEANDHTQAA GGMRHGNMGH LTRIANTVVQ NLEGSP---- BACU020154/1-960 CCLVQRILEA WEANDHTQAA GGMRRGNMGH LTRIANAVVQ SLEGGPVQTQ 501 550 ENSP00000379090/1-933 ISEVIRGLPA DCRGRWESFV EETLTETNRR NTVDL----- ---------- ENSBTAP00000024829/1-834 VSEVFRGLPA DCRGRWESFV EETLSEANRR NAVDLVSTHH LHPSSEDEDM ENSTTRP00000013231/1-945 VSEVLRXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXSSEDEDM bmy_11148T0/1-606 ---------- -CR------- ---------- ---------- ---PSEEEDV BACU020154/1-960 VSEVLRGLPS DCRGRWESFV EETLTEANRR NAVDLVSTHH LHPSSEDEDM 551 600 ENSP00000379090/1-933 ---------- --AFSDYQIQ QMTANFVDQF GFNDEEFADQ DDNINAPFDR ENSBTAP00000024829/1-834 EGVLPSELSL QQAFSEYQVQ QMTATFVDQF GFSDEEFAEQ DDSVNAPFDR ENSTTRP00000013231/1-945 EGVFPNELSL QQAFSEYQVQ QMTATFVDQF GFSDEEFAEQ DDSVNAPFDR bmy_11148T0/1-606 EGVFPDELCL QQAFSEYQIQ QMTATFVDQF GFSNEEFAEQ DNSVNAPFDR BACU020154/1-960 EGVFPNELSL QQAFSEYQVQ QMTTTFVDQF GFSDEEFAEQ DDSVNAPFDR 601 650 ENSP00000379090/1-933 IAEINFNIDA DEDSPSAALF EACCSDRIQP FDDDEDEDIW EDSDTRCAAR ENSBTAP00000024829/1-834 IAEISFTVDA DDDSPGAALF EACCSDHIQP F--DEDDDLW EAEETHRAAR ENSTTRP00000013231/1-945 IAEINFSVDA DEDSPGAALF EACCSDHIQP F--DEDDDLW EDEETHCVAR bmy_11148T0/1-606 IMEINFSV-- --DSPGAALF EACCSDHIQP F--DKDDDLG EDEEAHRVAQ BACU020154/1-960 IAEISFSVDA DEDSPSATLF EACCSDHIQP F--DEDDDLW EDEETHCVAR 651 700 ENSP00000379090/1-933 VMARPRFGAP HASESCSKNG PERGGQDGKA SLEAHRDAPG AGAPPAPGKK ENSBTAP00000024829/1-834 V-TRARFGGP HASERCPKDG PERRGQGAGE GVGA----VQ AGSP------ ENSTTRP00000013231/1-945 V-TRARFGGP HASESCRKDG LEHRGQGGEE SSEADG--AR AGAPRAAVQE bmy_11148T0/1-606 V-TRARFGGP HASESCRKDG PERRGQGGEE SSGADGDMAR VGAPRAATQK BACU020154/1-960 V-TRARFGGP HASESCRKDG PERRGQGGEE SSEADGDGAR AGALRAAVRK 701 750 ENSP00000379090/1-933 EAPPVEGDSE -GAMWTAVFD EPANSTPT-- APGVVRDVGS SVWAAG---T ENSBTAP00000024829/1-834 ----CEGGSE AGSSWA-VFD GPVTPMAASP APAVARDVGS SVWAAGSPST ENSTTRP00000013231/1-945 EGPRVEGGSE -GAPWT-VSD EPVNSTASGL APAVAMDVGS SVWAASAPSA bmy_11148T0/1-606 ESPRVEGGSE AGAP------ ---------- ---------- ---------- BACU020154/1-960 EGPRV-GDSE AGAPWT-VSD EPVNSTASGL APAVAMDVGS SVWAASAPSA 751 800 ENSP00000379090/1-933 SAPEEKGWAK FTDFQPFCCS ESGPRCSSPV DTECSHAEGS RSQGPEKAF- ENSBTAP00000024829/1-834 SAPEEKGWAK FADFQPFCCS ESGPRCSSPV DTGHGDTQAG LNQGPERAHL ENSTTRP00000013231/1-945 SAAEERGWAK FADFQPFCCS ESGPRCSSPV DRGHGDAQGG LNRGPERTP- bmy_11148T0/1-606 ---------- ---------- ---------- ---------- ---------- BACU020154/1-960 SAAEERGWAK FADFQPFCCS ESGPRCSSPV DRGHGDAQGG LNRGPERTP- 801 850 ENSP00000379090/1-933 -------SPA SPCAWNVCVT RKAPLLASDS SSSGGSHSED GDQKAASAMD ENSBTAP00000024829/1-834 EATGLSGGPA CVGAWSTCVP RKAPLVAASS R--------E DEQKAAAALE ENSTTRP00000013231/1-945 PAPCVAAGPA TLGAWNACVA RKAPLVASSS R--------E DKQKVALASE bmy_11148T0/1-606 ---------- ---------- ---------- ---------- ---------- BACU020154/1-960 PAPCVAAGPA APGAWNACVA RKAPLGAPSG R--------E DKQKVAVSSE 851 900 ENSP00000379090/1-933 AVSRGPGREA PPLPTVARTE EAVGRVGCAD SRLLSPACPA PKEVTAAPAV ENSBTAP00000024829/1-834 AVGVGPSQKA SPL------- ---------- ---------- ---------- ENSTTRP00000013231/1-945 AVRMGPGREA PPPPVL---- --VPRSECAA STPPDLASLA PVEVTSAPVG bmy_11148T0/1-606 ---------- ---------- ---------- ---------- ---------- BACU020154/1-960 AVRMGPGREA PPPPVF---- --VPRAECAT STPPDLASLA PVEVTSAPVG 901 950 ENSP00000379090/1-933 AVPPEATVAI TTALSKAGPA IPTPAVSSAL AVAVPLGPIM AVTAAPAMVA ENSBTAP00000024829/1-834 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000013231/1-945 AVLREAAVAA TTVPGNTGPA SATPAVSPVL AVAVT--PAA ---PAVSTAA bmy_11148T0/1-606 ---------- ---------- ---------- ---------- ---------- BACU020154/1-960 AVLPEAAVAA TTVPGNAGPA PATPAVSPVL AVAVT--PAA PAGPAVSTAA 951 1000 ENSP00000379090/1-933 TLGTVTKD-- ---------G KTDAPPEGAA LNGPV ENSBTAP00000024829/1-834 ---------- ---------- ---------- ----- ENSTTRP00000013231/1-945 TLGTVTKDR- ---------Q TDGPPPAGAA LNGLV bmy_11148T0/1-606 ---------- ---------- ---------- ----- BACU020154/1-960 TLGTVTKDRR AGGTRGGAGQ TDGPLPAGAA LNGLV