KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:24:14 2014 Check: 00 .. Name: ENSBTAP00000024875/1-943 Len: 1354 Check: 3750 Weight: 1.00 Name: ENSP00000367787/1-1009 Len: 1354 Check: 1280 Weight: 1.00 Name: BACU013951/1-1334 Len: 1354 Check: 1772 Weight: 1.00 Name: bmy_02913T0/1-701 Len: 1354 Check: 1760 Weight: 1.00 Name: ENSTTRP00000014659/1-1000 Len: 1354 Check: 1599 Weight: 1.00 // 1 50 ENSBTAP00000024875/1-943 ---------- ---------- ---------- ---------- ---------- ENSP00000367787/1-1009 ---------- ---------- ---------- ---------- ---------- BACU013951/1-1334 MASSASARPE AGKRVVNQDE LRRLMKEKQR LSTNRKRIES PFAKYNRLGQ bmy_02913T0/1-701 ---------- ---------- ---------- ---------- -----RRWGL ENSTTRP00000014659/1-1000 ---------- ---------- ---------- ---------- ---------- 51 100 ENSBTAP00000024875/1-943 ---------- ---------- ---------- ---------- ---------- ENSP00000367787/1-1009 ---------- ---------- ---------- ---------- ---------- BACU013951/1-1334 LSCALCNTAV KSELLWQTHV LGKQHREKVA ELKGVKEAAQ GPSASAVPQS bmy_02913T0/1-701 DLCACALRPA QGPGFKETGV ------TTLV AARGLWVPGP RPEVEPEPGR ENSTTRP00000014659/1-1000 ---------- ---------- ---------- ---------- ---------- 101 150 ENSBTAP00000024875/1-943 ---------- ---------- --MTLAFKIL FPPTLRVL-- ---------- ENSP00000367787/1-1009 ---------- ---------- --MSLAFKIF FPQTLRAL-- ---------- BACU013951/1-1334 ASAVPQSTKR KAPDAESQDA KRARASVVSQ VQPSTSALPT NVDKAGKEPT bmy_02913T0/1-701 QGVQSLPHPS TYFNFPSHPV SCMTLAFKIL LPPTLRAL-- ---------- ENSTTRP00000014659/1-1000 ---------- ---------- --MTLAFKIL LPPTLRAL-- ---------- 151 200 ENSBTAP00000024875/1-943 ---------- ---------- ---------- ---RKKELC- ---------- ENSP00000367787/1-1009 ---------- ---------- ---------- ---SRKELC- ---------- BACU013951/1-1334 RATLSKASGL GLLPDYEDEE EEEEKEEGGG GEGKRGDVCK HPANAQGKEH bmy_02913T0/1-701 ---------- ---------- ---------- ---SQKELC- ---------- ENSTTRP00000014659/1-1000 ---------- ---------- ---------- ---SQKELC- ---------- 201 250 ENSBTAP00000024875/1-943 ---------- ---------- ---------- ---------- ---------- ENSP00000367787/1-1009 ---------- ---------- ---------- ---------- ---------- BACU013951/1-1334 SLSSAREAAG SRLPSDFSDT NPPKAPLIPH SGSIEKAEIH EKVVERRENT bmy_02913T0/1-701 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014659/1-1000 ---------- ---------- ---------- ---------- ---------- 251 300 ENSBTAP00000024875/1-943 -------LFR E--------- ---------H RRPD----IR HFGRWSETVF ENSP00000367787/1-1009 -------LFR K--------- ---------H HWRD----VR QFSQWSETDL BACU013951/1-1334 AEALPEGFFD DPEIDARVRK VDAPKDQMDK EWDEFQKAMR QVNTISEAIV bmy_02913T0/1-701 -------LFR E--------- --------QH HWPD----IR QFSRWSETVL ENSTTRP00000014659/1-1000 -------LFR E--------- --------QH HWPD----IR QFSRWSETVL 301 350 ENSBTAP00000024875/1-943 ---------- ---------- ---------- -CGYHLLQRR KPVPSF---- ENSP00000367787/1-1009 L--------- ---------- ---------- -HGHPLFLRR KPVLSF---- BACU013951/1-1334 AEEDEEGRLD RQIGEIDEQI ECYRRVEKLR NRQDEIKNKL KEVLTIKELQ bmy_02913T0/1-701 ---------- ---------- ---------- -RGHRLLQRR KPVVSF---- ENSTTRP00000014659/1-1000 ---------- ---------- ---------- -HGHHLLQRR KPVVSF---- 351 400 ENSBTAP00000024875/1-943 --QESNLKLR ATCLVYLPGS HVGLCSGPCE MAEQRFCVDY AKRGTAGCKK ENSP00000367787/1-1009 --QGSHLRSR ATYLVFLPGL HVGLCSGPCE MAEQRFCVDY AKRGTAGCKK BACU013951/1-1334 KKEEENVDSD DEQFHY-EGS HVGLCSGPCE MAEQRFCVDY AKRGTAGCKK bmy_02913T0/1-701 --QESNLRPR ATRLVFLPGS HVGLCSGPCE MAEQRFCVDY AKRGTAGCKK ENSTTRP00000014659/1-1000 --QESNLRPR ATCLVFLPGS HVGVCSGPCE MAEQRFCVDY AKRGTAGCKK 401 450 ENSBTAP00000024875/1-943 CKEKIVKGVC RIGKVVPNPF SESGGDMKEW YHIKCMFEKL ERARATTKKI ENSP00000367787/1-1009 CKEKIVKGVC RIGKVVPNPF SESGGDMKEW YHIKCMFEKL ERARATTKKI BACU013951/1-1334 CKEKIVKGVC RIGKVVPNPF SESGGDMKEW YHIKCMFEKL ERARATTKKI bmy_02913T0/1-701 CKEKIVKGVC RIGKVVPNPF SESGGDMKEW YHIKCMFEKL ERARATTKKI ENSTTRP00000014659/1-1000 CKEKIVKGVC RIGKVVPNPF SESGGDMKEW YHIKCMFEKL ERARATTKKI 451 500 ENSBTAP00000024875/1-943 EDLTELEGWE ELEENEKEQI SQHIADLSSK ATSTPKKKAV VQAKLTATGQ ENSP00000367787/1-1009 EDLTELEGWE ELEDNEKEQI TQHIADLSSK AAGTPKKKAV VQAKLTTTGQ BACU013951/1-1334 EDLTELEGWE ELEDNEKEQI SQHIADLSSK AANTPKKKAV VQAKLTATGQ bmy_02913T0/1-701 EDLTELEGWE ELEDNEKEQI SQHIADLSSK AGNTPKKKAV VQAKLTATGQ ENSTTRP00000014659/1-1000 EDVTELEGWE ELEDNEKEQI IQHIADLSSK AANTPKKKAV VQAKLTATGQ 501 550 ENSBTAP00000024875/1-943 VASPVKGASF VTNSNPRKFS GFSAKPNNSG EAHSSPTPKT PKTSLSSSKC ENSP00000367787/1-1009 VTSPVKGASF VTSTNPRKFS GFSAKPNNSG EAPSSP---T PKRSLSSSKC BACU013951/1-1334 VTSPVKGASF VTNTNPRKFS GFSAKPNNSG EAHSSP---T PKISLSSSKC bmy_02913T0/1-701 VTSPVKGASF VTNTNPRKFS GFS------- ---------- ---------- ENSTTRP00000014659/1-1000 VTSPVKGASF VTNTNPRKFS GFSAKPNNSG EAHSIP---T PKTSLSSSKC 551 600 ENSBTAP00000024875/1-943 DPKHKDCLLR EFRKLCAMVA ENPSYNTKTQ IIQDFLQKGS AGDGFHGDVY ENSP00000367787/1-1009 DPRHKDCLLR EFRKLCAMVA DNPSYNTKTQ IIQDFLRKGS AGDGFHGDVY BACU013951/1-1334 DPKHKDCLLR EFRKLCAMVA ENPSYNTKTQ IIQDFLQKGS AGDGFHGDVY bmy_02913T0/1-701 ---------- ---------- ---------- ---------- --DGFHGDVY ENSTTRP00000014659/1-1000 DPKHKDCLLR EFRKLCAMVA ENPSYNTKTQ IIQDFLQKGS AGDGFHGDVY 601 650 ENSBTAP00000024875/1-943 LTVKLLLPGV IKSVYNLNDK QIVKLFSRIF NCNSDDMTRD LEQGDVSETI ENSP00000367787/1-1009 LTVKLLLPGV IKTVYNLNDK QIVKLFSRIF NCNPDDMARD LEQGDVSETI BACU013951/1-1334 LTVKLLLPGV VKSVYNLNDK QIVKLFSRIF NCNSDDMARD LEQGDVSETI bmy_02913T0/1-701 LTVKLLLPGV IKSVYNLNDK QIVKLFSRIF NCNSDDMARD LEQGDVSETI ENSTTRP00000014659/1-1000 LTVKLLLPGV VKSVYNLNDK QIVKLFSRIF NCNSDDMARD LEQGDVSETI 651 700 ENSBTAP00000024875/1-943 RVFFEQSKSF ---------- ---------- ---------- ---------- ENSP00000367787/1-1009 RVFFEQSKSF ---------- ---------- ---------- ---------- BACU013951/1-1334 RVFFEQSKSF PPAAKSLLTI QEVDEFLLRL SKLTKEDEQQ QALQDIASSK bmy_02913T0/1-701 RVFFEQSKSF ---------- ---------- ---------- ---------- ENSTTRP00000014659/1-1000 RVFFEESKSF ---------- ---------- ---------- ---------- 701 750 ENSBTAP00000024875/1-943 --PPAAKSLL TIQEVDEFLL RLSKLTKEDE QQQALQDIAS RCTANDLKCI ENSP00000367787/1-1009 --PPAAKSLL TIQEVDEFLL RLSKLTKEDE QQQALQDIAS RCTANDLKCI BACU013951/1-1334 SFPPAAKSLL TIQEVDEFLL RLSKLTKEDE QQQALQDIAS RCTANDLKCI bmy_02913T0/1-701 --PPAAKSLL TIQEVDEFLL RLSKLTKEDE QQQALQDIAS RCTANDLKCI ENSTTRP00000014659/1-1000 --PPAAKSLL TIQEVDEFLL RLSKLTKEDE QQQALQDIAS RCTANDLKCI 751 800 ENSBTAP00000024875/1-943 IRLIKHDLKM NSGAKHVLDA LDPNAYEAFK ASRNLQDVVE RVLRNEQEVE ENSP00000367787/1-1009 IRLIKHDLKM NSGAKHVLDA LDPNAYEAFK ASRNLQDVVE RVLHNAQEVE BACU013951/1-1334 IRLIKHDLKM NSGAKHVLDA LDPNAYEAFK ASRNLHDVVE RVLRNEQEVK bmy_02913T0/1-701 IRLIKHDLKM NSGAKHVLDA LDPNAYEAFK ASRNLHDVVE RVLRNEQEVK ENSTTRP00000014659/1-1000 IRLIKHDLKM NSGAKHVLDA LDPNAYEAFK ASRNLHDVVE RVLRNEQEVK 801 850 ENSBTAP00000024875/1-943 KEPGQRRALS VQASLMTPVQ PMLAEACKSI EYAMKKCPNG MFSEIKYDGE ENSP00000367787/1-1009 KEPGQRRALS VQASLMTPVQ PMLAEACKSV EYAMKKCPNG MFSEIKYDGE BACU013951/1-1334 KEPGRKRALS VQASLMTPVQ PMLAEACKSI EYAMKKCPNG MFSEIKYDGE bmy_02913T0/1-701 KEPGRKRALS VQASLMTPVQ PMLAEACKSI EYAMKKCPNG MFSEIKYDGE ENSTTRP00000014659/1-1000 KEPGRKRALS VQASLMTPVQ PMLAEACKSI EYAMKKCPNG MFSEIKYDGE 851 900 ENSBTAP00000024875/1-943 RVQVHKKGDH FSYFSRSLKP VLPHKVAHFK DFIPRAFPGG HSMILDSEVL ENSP00000367787/1-1009 RVQVHKNGDH FSYFSRSLKP VLPHKVAHFK DYIPQAFPGG HSMILDSEVL BACU013951/1-1334 RVQVHKNGDH FSYFSRSLKP VLPHKVAHFK DYIPQAFPGG HSMILDSEVL bmy_02913T0/1-701 RVQVHKNGDH FSYFSRSLKP VLPHKVAHFK DYIPQAFPGG HSMILDSEVL ENSTTRP00000014659/1-1000 RVQVHKNGDH FSYFSRSLKP VLPHKVAHFK DYIPQAFPGG HSMILDSEVL 901 950 ENSBTAP00000024875/1-943 LIDNRTGKPL PFGTLGVHKK AAFQDANVCL FVFDCIYFND VSLMDRPLCE ENSP00000367787/1-1009 LIDNKTGKPL PFGTLGVHKK AAFQDANVCL FVFDCIYFND VSLMDRPLCE BACU013951/1-1334 LIDNKKGKPL PFGTLGVHKK AAFQDANVCL FVFDCIYFND VSLMDRPLFE bmy_02913T0/1-701 LIDNKKGKPL PFGTLGVHKK AAFQDANVCL FVFDCIYFND VSLMDRPLFE ENSTTRP00000014659/1-1000 LIDNKKGKPL PFGTLGVHKK AAFQDANVCL FVFDCIYFND VSLMDRPLFE 951 1000 ENSBTAP00000024875/1-943 RRKLLHDNMV EIPNRIMFSE MKQVTKASDL VDMINRVIQE GLEGLVLKDV ENSP00000367787/1-1009 RRKFLHDNMV EIPNRIMFSE MKRVTKALDL ADMITRVIQE GLEGLVLKDV BACU013951/1-1334 RRKFLHDNMV EIPNRILFSE MKQVAKASDL ADMINRVIQE GLEGLVLKDV bmy_02913T0/1-701 RRKFLHDNMV EIPNRIMFSE MKQVAKASDL ADMINRVIQE GLEGLVLKDV ENSTTRP00000014659/1-1000 RRKFLHDNMV EIPNRIMFSE MKQVAKASDL ADMINRVIQE GLEGLVLKDM 1001 1050 ENSBTAP00000024875/1-943 KGTYEPGKRH WLKVKKDYLN EGAMADTADL VVLGAFYGQG SKGGMMSIFL ENSP00000367787/1-1009 KGTYEPGKRH WLKVKKDYLN EGAMADTADL VVLGAFYGQG SKGGMMSIFL BACU013951/1-1334 KGTYEPGKRH WLKVKKDYLN EGAMADTADL VVLGAFYGQG SKGGMMSIFL bmy_02913T0/1-701 KSS------- ---------- ---------- ---------- ---------- ENSTTRP00000014659/1-1000 KGTYEPGKRH WLKVKKDYLN EGAMADTADL VVLGAFYGQG SKGGMMSIFL 1051 1100 ENSBTAP00000024875/1-943 MGCYDPSSQK WCTVTKCAGG HDDATLARLQ TELDMVKISK DPSKIPNWLK ENSP00000367787/1-1009 MGCYDPGSQK WCTVTKCAGG HDDATLARLQ NELDMVKISK DPSKIPSWLK BACU013951/1-1334 MGCYDPSSQK WCTVTKCAGG HDDATLARLQ KELDMVKISK DPSKIPSWLK bmy_02913T0/1-701 ------GSQR ---------- ---------- ---------- ---------- ENSTTRP00000014659/1-1000 MGCYDPSSQK WCTVTKCAGG HDDATLARLQ KELDMVKISK DPSKIPSWLK 1101 1150 ENSBTAP00000024875/1-943 INKIYYPDFI VPDPKKAAVW EITGAEFSKS EAHTADGISI RFPRCTRIRD ENSP00000367787/1-1009 VNKIYYPDFI VPDPKKAAVW EITGAEFSKS EAHTADGISI RFPRCTRIRD BACU013951/1-1334 INKIYYPDFI VPDPKKAAVW EITGAEFSKS EAHTADGISI RFPRCTRIRD bmy_02913T0/1-701 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000014659/1-1000 VNKIYYPDFI VPDPKKAAVW EITGAEFSKS EAHTADGISI RFPRCTRIRD 1151 1200 ENSBTAP00000024875/1-943 DKDWKSATTL PQLKELYQLS KERAAFAITA GDEGSSATGG SSGENEGTSG ENSP00000367787/1-1009 DKDWKSATNL PQLKELYQLS KEKADFTVVA GDEGSSTTGG SSEENKGPSG BACU013951/1-1334 DKDWKSATNL PQLKELYQLS KERAAFAIVA GDEGSSTTGG SSGENEGTLG bmy_02913T0/1-701 ---------- ---------- ---------- ---------- --------MG ENSTTRP00000014659/1-1000 DKDWKSATNL PQLKELYQLS KERAAFTIVA GDEGNSTTGG SSGENEGISG 1201 1250 ENSBTAP00000024875/1-943 PAVPHKAPRA SPKQPPTSAK KAGGKPGGCT SRGGNLPAAE PS-------- ENSP00000367787/1-1009 SAVS----RK APSKPSASTK KAEGKLSNSN SKDGNMQTAK PSAMKVGEKL BACU013951/1-1334 PAVSHEAPRN SPKQPSASAK KAGGKLSSSN GKGGNNLAAK PS-------- bmy_02913T0/1-701 LCMS------ ---------- ---------- ---------- ---------- ENSTTRP00000014659/1-1000 PAVSHEAPRT SPKQPSASAK KAGGKLSSSN SKGGNKLAAK PS-------- 1251 1300 ENSBTAP00000024875/1-943 -----PVRAG VKRKAPDVTP CQAK------ ---------- ---------- ENSP00000367787/1-1009 ATKSSPVKVG EKRKAADETL CQTKVLLDIF TGVRLYLPPS TPDFSRLRRY BACU013951/1-1334 -----PVKVG EKRKAPDETP CQAKVLPDIF TGVRLYLPPS TPDFSRLRRY bmy_02913T0/1-701 -----PIVPG AER----VGH CDRCV----- ---------- ---------- ENSTTRP00000014659/1-1000 -----PVKVG EKRKAPDETP CQAKVLLDIF TGVRLYLPPS TPDFSRLRRY 1301 1350 ENSBTAP00000024875/1-943 ---------- ---------- -----RRPA- ---------- SKRRGRRAVP ENSP00000367787/1-1009 FVAFDGDLVQ EFDMTSATHV LGSRDKNPAA QQVSPEWIWA CIRKRRLVAP BACU013951/1-1334 FVAFDGDLAQ EFDVASATHV LGSRDKNPEA QQVSPEWIWA CIRKRRLVAP bmy_02913T0/1-701 ---------- ---------- ---------- ---------- CXVKR----- ENSTTRP00000014659/1-1000 FVAFDGDLAQ EFDVASATHV LGSRDKNPEA QQVSPEWIWA CIRKRRLVAP 1351 1400 ENSBTAP00000024875/1-943 TGRR ENSP00000367787/1-1009 C--- BACU013951/1-1334 C--- bmy_02913T0/1-701 ---- ENSTTRP00000014659/1-1000 C---