KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:24:15 2014 Check: 00 .. Name: ENSP00000355652/1-258 Len: 258 Check: 6504 Weight: 1.00 Name: ENSBTAP00000024876/1-255 Len: 258 Check: 86 Weight: 1.00 Name: bmy_19528T0/1-179 Len: 258 Check: 9785 Weight: 1.00 Name: BACU009556/1-152 Len: 258 Check: 8830 Weight: 1.00 Name: ENSTTRP00000002856/1-170 Len: 258 Check: 8621 Weight: 1.00 // 1 50 ENSP00000355652/1-258 MPPQQGDPAF PDRCEAPPVP PRRERGGRGG RGPGEPGGRG RAGGAEGRGV ENSBTAP00000024876/1-255 MPPQQGDPAF PGRCEAPPVP PRRE---RGV RGPGAPGGRG RAGGPEGHGV bmy_19528T0/1-179 ---------- ---------- ---------- ---------- ---MSKDRKV BACU009556/1-152 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002856/1-170 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000355652/1-258 KCVLVGDGAV GKTSLVVSYT TNGYPTEYIP TAFDNFSAVV SVDGRPVRLQ ENSBTAP00000024876/1-255 KCVLVGDGAV GKTSLVVSYT TNGYPTEYIP TAFDNFSAVV SVDGRPVKLQ bmy_19528T0/1-179 K--------- ---------- ---------- -------AVV SVDGRPVRLQ BACU009556/1-152 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000002856/1-170 ---------- ---------- ---------- --------VV SVDGRPVRLQ 101 150 ENSP00000355652/1-258 LCDTAGQDEF DKLRPLCYTN TDIFLLCFSV VSPSSFQNVS EKWVPEIRCH ENSBTAP00000024876/1-255 LCDTAGQDEF DKLRPLCYTN ADIFLLCFSV VGPSSFQNVS EKWVPEIRCH bmy_19528T0/1-179 LCDTAGQDEF DKLRPLCYTS ADIFLLCFSV VGPSSFQNVS EKWVPEIRCH BACU009556/1-152 ------QDEF DKLRPLCYTS ADIFLLCFSV VGPSSFQNVS EKWVPEIRCH ENSTTRP00000002856/1-170 LCDTAGQDEF DKLRPLCYTS ADIFLLCFSV VGPSSFQNVS EKWVPEIRCH 151 200 ENSP00000355652/1-258 CPKAPIILVG TQSDLREDVK VLIELDKCKE KPVPEEAAKL CAEEIKAASY ENSBTAP00000024876/1-255 CPKAPIILVG TQSDLREDVK VLIELDKCKE KPVPEEAARL CAEEIKATSY bmy_19528T0/1-179 CPKAPIILVG TQSDLREDVK VLIELDKCKE KPVPEEAARL CAEEIKAASY BACU009556/1-152 CPKAPIILVG TQSDLREDVK VLIELDKCKE KPVPEEAARL CAEEIKAASY ENSTTRP00000002856/1-170 CPKAPIILVG TQSDLREDVK VLIELDKCKE KPVPEEAARL CAEEIKAASY 201 250 ENSP00000355652/1-258 IECSALTQKN LKEVFDAAIV AGIQYSDTQQ QPKKSKSRTP DKMKNLSKSW ENSBTAP00000024876/1-255 IECSALTQKN LKEVFDAAIV AGIQYSDSQQ QPKKSKSRTP DKMKTLSKSW bmy_19528T0/1-179 IECSALTQKN LKEVFDAAIV AGIQYSDSQQ QPRKSKSRAP DKMKTLSKSW BACU009556/1-152 IECSALTQKN LKEVFDAAIV AGIQYSDSQQ QPRKSKSRAP DKMKTLSKSW ENSTTRP00000002856/1-170 IECSALTQKN LKEVFDAAIV AGIQYSDSQQ QPRKSKSRTP DKMKTLSKSW 251 300 ENSP00000355652/1-258 WKKYCCFV ENSBTAP00000024876/1-255 WKKYCCFV bmy_19528T0/1-179 WKKYCCFV BACU009556/1-152 WKKYCCFV ENSTTRP00000002856/1-170 WKKYCCFV