KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:24:20 2014 Check: 00 .. Name: ENSBTAP00000024922/1-969 Len: 1024 Check: 2648 Weight: 1.00 Name: ENSTTRP00000005821/1-976 Len: 1024 Check: 8245 Weight: 1.00 Name: bmy_15524T0/1-643 Len: 1024 Check: 1398 Weight: 1.00 Name: BACU019123/1-962 Len: 1024 Check: 1453 Weight: 1.00 // 1 50 ENSBTAP00000024922/1-969 CSSLTLYIFT APVGGQFASE IKSVISLHPP WTTLFQGETV TLTCKAFQFN ENSTTRP00000005821/1-976 MLLWVSLLVL VSSPQQSPTE AKSVVFLHSP WTTVFQGENV TLTCKAFHLD bmy_15524T0/1-643 ---------- --------TE PKSVIFLRPP WTTVFQGENV TLTCKTIHFD BACU019123/1-962 ---------- --------TE PKSVIFLHPP WTTVFQGENV TLTCKTIHFD 51 100 ENSBTAP00000024922/1-969 APQKRKWYRW YLPGEIQSET TENTYEARES GGYKCQAQDS HSSDR----- ENSTTRP00000005821/1-976 ASEKIKWYRW YLMEKTQSET SGNTHEVHES GDYRCQAQDS PLSNR----- bmy_15524T0/1-643 ASEKIKWYRW YLLGEIQSET SGNTHEVHES GDYRCQAQDS LLKGRNNQMK BACU019123/1-962 ASEKIKWYHQ YLLEEIQSET SGNTHEVHES GDYRCQAQDS LLSNR----- 101 150 ENSBTAP00000024922/1-969 --VDLLFTAA SLILQAPSDV FEADSVVLRC QAKANVILNN MTLYKNGKVL ENSTTRP00000005821/1-976 --VGLLFSPA NLILQAPLDV FEEESVILRC RAKANTVLKT IKLYKNEKVL bmy_15524T0/1-643 QTTALVFPTA NLILQAPLDV FEKESVILRC RAKANTVLNT IKLYKNGKVL BACU019123/1-962 --VSLLFSPA NLILQAPLDV FEKESVILRC RAKANTVLNT IKLYKNGKVL 151 200 ENSBTAP00000024922/1-969 QVLDKTSDFH IYQASMKDNG DYHCSGFK-D THLVSSNKIK IVVQELFPSP ENSTTRP00000005821/1-976 EDPSGKTDFH IHQASLKDNG KYHCTGVKED DQLVSSNSVK IEVQELFPRP bmy_15524T0/1-643 EVLEKSSDFH IHQASLKDNG EYHCIGVKED DQLVYSNSVK IEVQELFPSP BACU019123/1-962 EVLEKSSDFH IHQASLKDNG KYHCVGVKED DRLVFSNSVK IEVQELFPSP 201 250 ENSBTAP00000024922/1-969 VLKASSTQPT EGNTVTLTCE TQLSLQRPES QLLFRFVKT- -SMWSEWKIS ENSTTRP00000005821/1-976 VLRASSTQPT EGGAVTLTCE TQLSPQRPDV QLQFHFFRDR RSLGSGWGSS bmy_15524T0/1-643 VLRASSTHPT EGGAVTLTCE TQLSPQRPDV QLQFHFFRDR WSRGSGWRSS BACU019123/1-962 VLRASSTQPT EGGAVTLTCE TQLSPQRPDV QLQFHFFRDR QSLGSGWRSS 251 300 ENSBTAP00000024922/1-969 PEFQFSPIRR ENSGSYWCEA RRLNSLVQKQ SQELQIQVQV PVSQPVLTLR ENSTTRP00000005821/1-976 PEFWIHTIWR ENSGSYWCQA ---AIPLSRN SQRLQIQVKX XXXXXXXXXX bmy_15524T0/1-643 PEFWIPTIWR EDSGSYWCQA QSMTPSVQKQ SQRLQIQVKK VV-------- BACU019123/1-962 PEFWIPTIWR EDSGSYWCQA QSMTPSVQKQ SQRLHIQVKS EC-------- 301 350 ENSBTAP00000024922/1-969 PPGTWTLVRD KISLQCEVQR GSLPIWYQFF HEDVLLMKTK STSERKMSHR ENSTTRP00000005821/1-976 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15524T0/1-643 ---------- ---------- ---------- ---------- ---------- BACU019123/1-962 ---------- ---------- -YLSTTFSLV PRNKLNSIPG QLPIGSADLA 351 400 ENSBTAP00000024922/1-969 LSLTENHFGK YYCTADNGLG PQRSEAVSKS TEIPVSKPVL TFSSPGTRTF ENSTTRP00000005821/1-976 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15524T0/1-643 ---------- ---------- ---------- -------PDI RIYTRPKLVF BACU019123/1-962 LPILRLFFYG LFCDTPIPRI PHVIFIHLDV V------PDV RIYPRPKLVF 401 450 ENSBTAP00000024922/1-969 VGDKMSLQCE VQRGSLPI-- -WYQFFHEDD LLKKREAISW ITESYSFSLI ENSTTRP00000005821/1-976 XXXXXXXXXX XXXXXXXX-- -XXXXXXXXX XXXXXXXXXX XXXXXXXXXX bmy_15524T0/1-643 EGQELVLICS VNGVPGPITI SWYGKFKKLR TERKLHTYSE -TEFKIPVVK BACU019123/1-962 EGQELVLICS VNGVPGPITI SWYRKFKKPR TERKLHTYSK -TEFKIPVVK 451 500 ENSBTAP00000024922/1-969 AEHSGNYYCT ADNGFGPQRS ESISLSVT-- ---------- ---------- ENSTTRP00000005821/1-976 XXXXXXXXXX XXXXXXXXXX XXXXXXXX-- ---------- ---------- bmy_15524T0/1-643 SSHDGEYYCV ASNSRSSFHS DPVTINVK-- ---------- ---------- BACU019123/1-962 NSHDGEYYCV ASNSRSSFRS DPVTINVKGV SARYYLRDGF SNFLKTTRKW 501 550 ENSBTAP00000024922/1-969 ---------- --VPVSQPVL TLSPPGTWTL VGNEVRLQCE VQRGSSPIWY ENSTTRP00000005821/1-976 ---------- --XPVSQPVL TLSPPGTWTF VGDEVSFDCE AQRGSLPIWY bmy_15524T0/1-643 ---------- --VPVSQPVL TLSPPGTRTL VGDEVSFDCE AQRGSLPIWY BACU019123/1-962 QMHLLTKCFF PSVPVSQPVL TLNPPGTRTL VGDEVSFDCE AQRGSLPIWY 551 600 ENSBTAP00000024922/1-969 QFFHEDVLLT RIEATSWRTR SYSFSVTAEH SGNYYCTADN GFGPQSSETI ENSTTRP00000005821/1-976 QFFHEGVLLM KIEATLWRTM SYRFFLTEEH SGNYYCTADN GLGLQSSETL bmy_15524T0/1-643 QFFREGVLLM KIETTLWRTT SYRFSLTAEH SGNYYCTADN GLGPQSSETL BACU019123/1-962 QFFREGVLLM KIETTLWRTT SYRFSLTAEH SGNYYCTADN GLGPQSSETL 601 650 ENSBTAP00000024922/1-969 NLSVIVPVSR PVLTLRPPRD QAVVGDVVEL HCEVQRGSPP ILYQFYHEDV ENSTTRP00000005821/1-976 RLSVTIPVSH PILTLRTPGA QAVVGDIVEL HCKAWRGSPP ILYQFYHEDA bmy_15524T0/1-643 RLSVTVPVSR PVLTLRAPGA QAVVGDVMEL HCEAWRGSPP ILYQFYHEDV BACU019123/1-962 RLSVTVPVSR PVLTLRVPRA QAVVGDVMEL HCEAWRGSPP ILYQFYHENV 651 700 ENSBTAP00000024922/1-969 TLGSSSSASG GGASFNLILK TEHSGNYFCE ANNGQGVQRS YTVSLSVRVP ENSTTRP00000005821/1-976 SLESSSSTSG RGASFNLLLT AEHSGNYFCE ANNGQGFQRS NTVSLSVRVP bmy_15524T0/1-643 SLGSSSSPSG RGASFNLLLT AEHSGNYFCE ANNGQGVQRS NTVSLSVRVP BACU019123/1-962 SLGSSSSPSG RGASFNLLLT AEHSGNYFCE ANNSQGVQRS NTVSLSVRVP 701 750 ENSBTAP00000024922/1-969 VSHPVLTLRT PRVQAVVGDI LEIHCETQRG SPPIRYQFYH EDVALGSFSS ENSTTRP00000005821/1-976 VSQPVLTLRA SRAQTVVGDM IELHCEAQRG SPPILYQFYH KDVAVGNSSA bmy_15524T0/1-643 VSHPVLTLRA SRAQAVVGDM VELHCEAQRG SPPILYQFYH EDVAVGSSSA BACU019123/1-962 VSHPVLTLRA SRAQAVVGDM VELHCEAQRG SPPILYQFYH EDVAVGSSSA 751 800 ENSBTAP00000024922/1-969 LSGGGTSFNL SLTTEHSGNY SCEADNGLWV QRSESVSLNV RSELVLPTAS ENSTTRP00000005821/1-976 PLGGGASFSL SLTTNHSGNY SCKADNGLGV QQSEVMLLSV IVPVSRPILT bmy_15524T0/1-643 PLGGGASFNL SLTMKHSGNY SCKADNGLGV QHSEVMLLSV I--------- BACU019123/1-962 PLGGGASFNL SLTMKHSGNY SCKADNGLGV QHSEVMLLSV IVPVSHPILT 801 850 ENSBTAP00000024922/1-969 QPRTDYLLSL ASKTELQYYS LLGNSPAY-- FLPTEPLTEW QRSWWTWSTS ENSTTRP00000005821/1-976 LRAPRAQAVV GDVVELHCEA QGGSPPILYQ FYHKNVTLES SMSHSGQGVS bmy_15524T0/1-643 ---------- ---------- ---------- ---------- ---------- BACU019123/1-962 LRTPRAQAVV GDVVELHCQA QRGSPPILYQ FYHKNVTLES SISHSGQGVS 851 900 ENSBTAP00000024922/1-969 LPMDTSGMHL QTQKCTQNTR VGTQSRGA-- LYVSDTPNNR EGPQAKKKKK ENSTTRP00000005821/1-976 LNLSLTANHS GTYSCEADNG LGPQCSEAVT LFITGLTGSR SGPVATGVTG bmy_15524T0/1-643 ---------- ---------- ---------- ---------- ---------- BACU019123/1-962 LNLSLTANHS GTYSCEANNG LGPQCSEAVT LSITGLTGSR SGPVATGVTG 901 950 ENSBTAP00000024922/1-969 NLASMHS--- -GLLQLCLNV EIKPQLKPRG SVAKNPSAPD PQESTYHNVP ENSTTRP00000005821/1-976 GLLSMMGLAA IALLFYCW-L PRKAGRKPTF DSSRNQSASD PQEPTYHNVP bmy_15524T0/1-643 ---------- ---------- ---------- ---------- ---------- BACU019123/1-962 GLLSVMGLAA VALLFYCW-L PRKAGGKPTF DSSRNPSASD PQEPTYYNVP 951 1000 ENSBTAP00000024922/1-969 GWIELQPVYS NVNPNRGEVV YSEVWSVKKE NKLTAASEPE PFKNTDSCVI ENSTTRP00000005821/1-976 SWIELQPVYS NVNPNRGDVV YSEVRTVKVE NKQAAASDPE LLKNTDSCVI bmy_15524T0/1-643 ---------- ---------- ---------- ---------- ---------- BACU019123/1-962 SWIELQPVYS NVNPNGGDVV YSEVRSVKAE NKQAAASDPE LLKNTDSCVI 1001 1050 ENSBTAP00000024922/1-969 YSQVKGASTT ASKPQFLDPL TPHR ENSTTRP00000005821/1-976 YSQVKGAYTA APKPQLLAAS PPQR bmy_15524T0/1-643 ---------- ---------- ---- BACU019123/1-962 YSQVKGAYAA APKPQLLAAS TPHR