KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:24:32 2014 Check: 00 .. Name: ENSTTRP00000011155/1-1138 Len: 1206 Check: 4357 Weight: 1.00 Name: ENSP00000389588/1-1205 Len: 1206 Check: 5569 Weight: 1.00 Name: ENSBTAP00000024989/1-1096 Len: 1206 Check: 6245 Weight: 1.00 Name: BACU006075/1-561 Len: 1206 Check: 7583 Weight: 1.00 Name: bmy_03222T0/1-912 Len: 1206 Check: 5690 Weight: 1.00 // 1 50 ENSTTRP00000011155/1-1138 ---------- ---------- ---------- ---------- ---------- ENSP00000389588/1-1205 MLHLSAEEAI GCVRVRRSFI DELAFGRGHS TGTGKQKRRD RVSGSSWCLA ENSBTAP00000024989/1-1096 ---------- ---------- ---------- ---------- ---------- BACU006075/1-561 ---------- ---------- ---------- ---------- ---------- bmy_03222T0/1-912 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000011155/1-1138 ---------- -----TPVAH LTGLRDAPAR PRCWTVGGSL HSLIRS-LPS ENSP00000389588/1-1205 CVSWMPCGFS PSPVAHHLVP GPPDTPAQQL RCGWTVGGWL LSLVRGLLPC ENSBTAP00000024989/1-1096 ---------- ---------- ---------- ---------- ---------- BACU006075/1-561 ---------- ---------- ---------- ---------- ---------- bmy_03222T0/1-912 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000011155/1-1138 PPPGAGSTEG PTMVFPGPLA VTLLPPSLTL LVVHLASSQD VASEPSSEQQ ENSP00000389588/1-1205 LPPGARTAEG PIMVLAGPLA VSLLLPSLTL LVSHLSSSQD VSSEPSSEQQ ENSBTAP00000024989/1-1096 ---GAGTTEG PTMVFPGPLA V-------TL LLVHLASSQD VAGEASGEQQ BACU006075/1-561 ---------- ---------- ---------- ---------- ---------- bmy_03222T0/1-912 ---------- --MVFPGPLA ITLLPPSLTL LVVRLASSQD VASEPSSEQQ 151 200 ENSTTRP00000011155/1-1138 LCSLREHPIV AFADLKPWVS NFTYPGAQDF SQLALDPSRN QLIVGARNYL ENSP00000389588/1-1205 LCALSKHPTV AFEDLQPWVS NFTYPGARDF SQLALDPSGN QLIVGARNYL ENSBTAP00000024989/1-1096 LCSLREHPIV AFADLKPWVS NFTYPGAQDF SQLALDPSRN QLIVGARNYL BACU006075/1-561 ---------- ---------- ---------- ---------- ---------- bmy_03222T0/1-912 LCSLREHPIV AFADLKPWVS NFTYPGAQDF SQLALDPSRN QLIVGARNYL 201 250 ENSTTRP00000011155/1-1138 FRLSLANVSL LQATEWASNE DTRRSCQSKG KTEEECQNYV RVLIVTGRKV ENSP00000389588/1-1205 FRLSLANVSL LQATEWASSE DTRRSCQSKG KTEEECQNYV RVLIVAGRKV ENSBTAP00000024989/1-1096 FRLSLANVSL LQATEWASNE DTRRSCQSKG KTEEECQNYV RVLIVTGRKV BACU006075/1-561 ---------- ---------- ---------- ---------- ---------- bmy_03222T0/1-912 FRLSLANVSL LQATEWASNE GTRRSCQSKG KTEEECQNYV RVLIVTGRKV 251 300 ENSTTRP00000011155/1-1138 FMCGTNAFSP VCSSRQVGNL SQTVEKINGV ARCPYDPRHN STAVISSQGE ENSP00000389588/1-1205 FMCGTNAFSP MCTSRQVGNL SRTIEKINGV ARCPYDPRHN STAVISSQGE ENSBTAP00000024989/1-1096 FMCGTNAFSP VCSSRQVGNL SRTVEKINGV ARCPYDPRHN STAVISSQGE BACU006075/1-561 ---------- ---------- ---------- ---------- ---------- bmy_03222T0/1-912 FMCGTNAFSP VCSSRQVGNL SRTVEKINGV ARCPYDPRHN STAVISSQGE 301 350 ENSTTRP00000011155/1-1138 LYAATVIDFS GRDPAIYRSL GSRPPLRTAQ YNSKWLNEPN FVAAYDIGLF ENSP00000389588/1-1205 LYAATVIDFS GRDPAIYRSL GSGPPLRTAQ YNSKWLNEPN FVAAYDIGLF ENSBTAP00000024989/1-1096 LYAATVIDFS GRDPAIYRSL GSRPPLRTAQ YNSKWLNEPN FVAAYDIGLF BACU006075/1-561 ---------- ---------- ---------- ---------- ---------- bmy_03222T0/1-912 LYAATVIDFS GRDPAIYRSL GSRPPLRTAQ YNSKWLNEPN FVAAYDIGLF 351 400 ENSTTRP00000011155/1-1138 AYFLLRENAV EHDCGRTVYS RVARVCKNDM GGRFLLEDTW TTFMKARLNC ENSP00000389588/1-1205 AYFFLRENAV EHDCGRTVYS RVARVCKNDV GGRFLLEDTW TTFMKARLNC ENSBTAP00000024989/1-1096 AYFFLRENAV EHDCGRTVYS RVARVCKNDV GGRFLLEDTW TTFMKARLNC BACU006075/1-561 ---------- ---------- ---------- ---------- ---------- bmy_03222T0/1-912 AYFLLRENAV EHDCGRTVYS RVARVCKNDI GGRFLLEDTW TTFMKARLNC 401 450 ENSTTRP00000011155/1-1138 SRPGEVPFYY NELQSAFHLP EQDLIYGVFT TNVNSIAASA VCAFNLSAIS ENSP00000389588/1-1205 SRPGEVPFYY NELQSAFHLP EQDLIYGVFT TNVNSIAASA VCAFNLSAIS ENSBTAP00000024989/1-1096 SRPGEVPFYY NELQSAFHLP EQDLIYGVFT TNVNSIAASA VCAFNLSAIS BACU006075/1-561 ---------- ---------- ---------- ---------- ---------- bmy_03222T0/1-912 SRPGEVPFYY NELQSAFHLP EQDLIYGVFT TNVNSIAASA VCAFNLSAIS 451 500 ENSTTRP00000011155/1-1138 QAFNGPFRYQ ENPRAAWLPI TNPIPNF-QC GTLPEVGPNE NLTERSLQDA ENSP00000389588/1-1205 QAFNGPFRYQ ENPRAAWLPI ANPIPNF-QC GTLPETGPNE NLTERSLQDA ENSBTAP00000024989/1-1096 QAFNGPFRYQ ENPRAAWLPI ANPIPNFQQC GTLPEVGPNE NLTERSLQDA BACU006075/1-561 ---------- ---------- ---------- ---------- ---------- bmy_03222T0/1-912 QAFNGPFRYQ ENPRAAWLPI ANPIPNF-Q- ---------- ---------- 501 550 ENSTTRP00000011155/1-1138 QRLFLMSEAV QPVTPEPCVT QDSVRFSHLV VDLVQAKDTL YHVLYIGTES ENSP00000389588/1-1205 QRLFLMSEAV QPVTPEPCVT QDSVRFSHLV VDLVQAKDTL YHVLYIGTES ENSBTAP00000024989/1-1096 QRLFLMSEAV QPVTPEPCVT QDSVRFSHLV VDLVQAKDTL YHVLYIGTES BACU006075/1-561 ---------- ---------- ---------- ---------- ---------- bmy_03222T0/1-912 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000011155/1-1138 GTILKALSTT SRSLRGCYLE ELHVLPPGRR EPLRSLRILH SARTLFVGLS ENSP00000389588/1-1205 GTILKALSTA SRSLHGCYLE ELHVLPPGRR EPLRSLRILH SARALFVGLR ENSBTAP00000024989/1-1096 GTILKALSTT SRSLRGCYLE ELHVLPPGRR EPLRSLRIVH SARALFVGLS BACU006075/1-561 ---------- ---------- ---------- ---------- ---------- bmy_03222T0/1-912 -----ALSTT SRSLRGCYLE ELHVLPPGRR EPLRSLRILH SARALFVGLS 601 650 ENSTTRP00000011155/1-1138 DGVLRVPLER CAAYRSQGAC LGARDPYCGW DGKQQRCSTL EDSSNMSLWT ENSP00000389588/1-1205 DGVLRVPLER CAAYRSQGAC LGARDPYCGW DGKQQRCSTL EDSSNMSLWT ENSBTAP00000024989/1-1096 DGVLRVPLER CAAYRSQGAC LGARDPYCGW DGKQQRCSTL EDSSNMSLWT BACU006075/1-561 ---------- ---------- ---------- ---------- -----MSLWT bmy_03222T0/1-912 DGVLRVPLER CAAYRSQGAC LGARDPYCGW DGKQQRCSTL EDSSNMSLWT 651 700 ENSTTRP00000011155/1-1138 QNITACPVRN VTRDGGFGPW SPWQPCEHLD GDNSGSCLCR ARACDSPRPR ENSP00000389588/1-1205 QNITACPVRN VTRDGGFGPW SPWQPCEHLD GDNSGSCLCR ARSCDSPRPR ENSBTAP00000024989/1-1096 QNITACPVRN VTRDGGFGPW SPWQPCEHLD GDNSGSCLCR SRACDSPRPR BACU006075/1-561 QNITACPVRN VTRDGGFGPW SPWQPCEHLD GDNSGSCLCR ARACDSPRPR bmy_03222T0/1-912 QNITACPVRN VTRDGGFGPW SPWQPCEHLD GDNSGSCLCR ARACDSPRPR 701 750 ENSTTRP00000011155/1-1138 CGGCDCLGPA IHIANCSRNG AWTPWSSWAL CSTSCGIGFQ VRQRSCSNPA ENSP00000389588/1-1205 CGGLDCLGPA IHIANCSRNG AWTPWSSWAL CSTSCGIGFQ VRQRSCSNPA ENSBTAP00000024989/1-1096 CGGLDCLGPA VHIANCSRNG AWTPWSSWAL CSTSCGIGFQ VRQRSCSNPA BACU006075/1-561 CGGCDCLGPA IHVANCSRNG AWTPWSSWAL CSTSCGIGFQ VRQRSCSNPA bmy_03222T0/1-912 CGGCDCLGPA IHVANCS--- ---------- ---------- ---------- 751 800 ENSTTRP00000011155/1-1138 PRHGGRICVG KSRE-RXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXQSR ENSP00000389588/1-1205 PRHGGRICVG KSREERFCNE NTPCPVPIFW ASWGSWSKCS SNCGGGMQSR ENSBTAP00000024989/1-1096 PRHGGRICVG KSREERFCNE NTPCPVPIFW ASWGSWSKCS SNCGGGVQSR BACU006075/1-561 PRHGGRICVG KSREERFCNE NTPCPVPIFW ASWGSWSKCS SHCGSGVQSR bmy_03222T0/1-912 ---------- -----RFCNE NTPCPVPIFW ASWGSWSKCS SHCGSGVQSR 801 850 ENSTTRP00000011155/1-1138 RRACENGNSC LGCGVEFKTC NHEGCPEVRR NTPWTPWLPV NVTQGGARQE ENSP00000389588/1-1205 RRACENGNSC LGCGVEFKTC NPEGCPEVRR NTPWTPWLPV NVTQGGARQE ENSBTAP00000024989/1-1096 RRTCENGNSC PGCGVEFKTC NPEACPEVRR NTPWTPWLPV NVTQGGARQE BACU006075/1-561 RRACENGNSC PGCGVEFKTC NPEGCPEVRR NTPWTPWLPV NVTRGGARQE bmy_03222T0/1-912 RRACENGNSC PGCGVEFKTC NPEGCPEVRR NTPWTPWLPV NVTQGGARQE 851 900 ENSTTRP00000011155/1-1138 QRFRFTCRAP LADPHGLQFG RRRTETRTCP ADGSGACDTD ALVEELLRSG ENSP00000389588/1-1205 QRFRFTCRAP LADPHGLQFG RRRTETRTCP ADGSGSCDTD ALVEVLLRSG ENSBTAP00000024989/1-1096 QRFRFTCRAP LPDPHGLQFG RRRMETRTCP ADGSGACDTD ALVEDLLRSG BACU006075/1-561 QRFRFTCRAP LADPHGLQFG RRRTETRTCP TDGSGACDTD ALVEELLRSG bmy_03222T0/1-912 QRFRFTCRAP LADPHGLQFG RRRTETRTCP ADGSGACDTD ALVEELLRSG 901 950 ENSTTRP00000011155/1-1138 GTSPHTVSGG WAAWGPWTSC SRDCELGFRV RKRTCTNPEP RNGGLPCVGD ENSP00000389588/1-1205 STSPHTVSGG WAAWGPWSSC SRDCELGFRV RKRTCTNPEP RNGGLPCVGD ENSBTAP00000024989/1-1096 GASPLMVSGG WAAWGPWSSC SRDCELGFRF RKRTCTNPEP RNGGLPCVGD BACU006075/1-561 GSSPHTASGG WAAWGPWSSC SRDCELGFRV RKRTCTNPEP RNGGLPCVGD bmy_03222T0/1-912 GSSPHTASGG WAAWGPWSSC SRDCELGFRV RKRTCTNPEP RNGGLPCVGD 951 1000 ENSTTRP00000011155/1-1138 AAEYQDCNPQ ACPVRGAWSC WTSWSPCSAS CGGGHYQRTR SCSSPAPSPG ENSP00000389588/1-1205 AAEYQDCNPQ ACPVRGAWSC WTSWSPCSAS CGGGHYQRTR SCTSPAPSPG ENSBTAP00000024989/1-1096 AAEYQDCNPH ACPVRGAWSC WTAWSPCSAS CGGGHYQRTR SCTSPAPSPG BACU006075/1-561 AAEYQDCNPQ ACPVRGAWSC WTSWSPCSAS CGGGHYQRTR SCTSPAPSPG bmy_03222T0/1-912 AAEYQDCNPQ AC-------- ---------- ---------- ---------- 1001 1050 ENSTTRP00000011155/1-1138 EDICLGLHTE EALCATQACP EGWSPWSEWS ACTEDGVQSR GRYCEELVPG ENSP00000389588/1-1205 EDICLGLHTE EALCATQACP EGWSPWSEWS KCTDDGAQSR SRHCEELLPG ENSBTAP00000024989/1-1096 EDICLGLHTE EALCATQACP EGWSPWSEWS ACTEDGVQSR DRHCEELVPG BACU006075/1-561 EDICLGLHTE EALCATQACP EGWSPWSEWS ACTEDGVQSR GRHCEELVPG bmy_03222T0/1-912 ---------- ---------P EGWSPWSEWS ACTEDGVQSR GRHCEELVPG 1051 1100 ENSTTRP00000011155/1-1138 PSTCAGNSSQ SRPCPSREMP VILPASSVDE TTGCGXXXXX XXXXXXXXXX ENSP00000389588/1-1205 SSACAGNSSQ SRPCPYSEIP VILPASSMEE ATDCAGFNLI HLVATGISCF ENSBTAP00000024989/1-1096 PSACAGNSSQ SRPCPYSEIP VILPASSVDE ATSCGGFSLI HLVATGISCF BACU006075/1-561 PSTCAGNSSQ SRPCPYREIP VILPASSVDE ATGCGGFSLI HLVATGISCF bmy_03222T0/1-912 PSTCAGNSSQ SRPCPYREIP VILPASSVDE ATGCGGFSLI HLVATGISCF 1101 1150 ENSTTRP00000011155/1-1138 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000389588/1-1205 LGSGLLTLAV YLSCQHCQRQ SQESTLVHPA TPNHLHYKGG GTPKNEKYTP ENSBTAP00000024989/1-1096 LGSGLLTLAV YLSCQHCQHQ SQESTLVHPA TPNHLHYKGG GTPKNEKYMP BACU006075/1-561 LGSGLLTLAV YLSCQHCRRQ SQESTLVHPA TPNHLHYKGG GAPKNEKYTP bmy_03222T0/1-912 LGSGLLTLAV YLSCQHCRHQ SQESTLVHPA TPNHLHYKGG GAPKNEKYTP 1151 1200 ENSTTRP00000011155/1-1138 XXXXTLNKNN LIPDDRANFY PLQQTNVYTT TYYPSPLNKH SFRPEASPGQ ENSP00000389588/1-1205 MEFKTLNKNN LIPDDRANFY PLQQTNVYTT TYYPSPLNKH SFRPEASPGQ ENSBTAP00000024989/1-1096 MEFKTLNKNN LIPDDRANFY PLQQTNVYTT TYYPSPLNKH SFRPEASPGQ BACU006075/1-561 MEFKTLNKNN LIPDDRANFY PLQQTNVYTT TYYPSPLNKH SFRPEASPGQ bmy_03222T0/1-912 MEFKTLNKNN LIPDDRANFY PLQQTNVYTT TYYPSPLNKH SFRPEASPGQ 1201 1250 ENSTTRP00000011155/1-1138 RCFPNS ENSP00000389588/1-1205 RCFPNS ENSBTAP00000024989/1-1096 RCFPNS BACU006075/1-561 RCFPNS bmy_03222T0/1-912 RCFPNS