KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:24:34 2014 Check: 00 .. Name: ENSTTRP00000005721/1-923 Len: 1306 Check: 7647 Weight: 1.00 Name: ENSP00000423366/1-1233 Len: 1306 Check: 9957 Weight: 1.00 Name: ENSBTAP00000025002/1-1228 Len: 1306 Check: 7390 Weight: 1.00 Name: bmy_15137T0/1-1108 Len: 1306 Check: 6468 Weight: 1.00 Name: BACU000666/1-1254 Len: 1306 Check: 9573 Weight: 1.00 // 1 50 ENSTTRP00000005721/1-923 MISTRVMDIK LREAAEGLGE D-----STGK KK--SKFK-- ------TFKK ENSP00000423366/1-1233 -MGTRAFSHD SIFIPDGGAE SEQTVQAMSQ DNILGKVK-- ------TLQQ ENSBTAP00000025002/1-1228 -MGEQKVSRQ FK---QCHRT T-----SWAK SKLFSRLSS- ------MFLR bmy_15137T0/1-1108 -MVSSLETGR VQNMPQCLLA M-----GNLA VVIVNRFTAS ERLSFVSLQR BACU000666/1-1254 ---------- ---------- -------MSQ DNILGKVK-- ------TLQR 51 100 ENSTTRP00000005721/1-923 FFGKKKR--K ESPSSTGSST WKQSQAKNEV IAIESGPVGY DSEDE--LEE ENSP00000423366/1-1233 QLGKNIKFGQ RSPNAIPMNK ANSGEASLEE DLFLTSPMEI VTQQDIVLSD ENSBTAP00000025002/1-1228 QLGKNIKFGQ PPPNAIPMKK ADSGEARFEE DPFLTSPVEV VTQQDLILSD bmy_15137T0/1-1108 QLGKNIKFGQ PPPNAIPMKK ADSGEAHLEE DPFLTSPMEI VTQQDVILSD BACU000666/1-1254 QLGTNIKFGQ PPPNAIPMKK ADSGEAHLEE DPFLTSPMEI VAQQDVILSD 101 150 ENSTTRP00000005721/1-923 SRGTLGSRAL SHDSIFIPES GQD------- --PPRPVRVF SQENVCDRIK ENSP00000423366/1-1233 AENKSSDTPS SLSPLNLPGA GSEMEEKVAP VKPSRPKRHF SSAGTIESVN ENSBTAP00000025002/1-1228 TENKSSETPS SPSPLNLPGA RSEMEEKVAP VKPSRPKRHL SSAGTIESVN bmy_15137T0/1-1108 TENKSSETPS SPGPLNPPGA GSEMEEKAAP VKPSRPKRHF SSAGTIESVN BACU000666/1-1254 TENKSSETPS SPGPLNPPGA GSEMEEKAAP VKPSRPKRHF SSAGTIESVN 151 200 ENSTTRP00000005721/1-923 --ALQLKI-- ----QCNVKM GLPPPPGGLP ARRGDDAGMS SEDDGLPRSP ENSP00000423366/1-1233 LDAIPLAIAR LDNSAAKHKL AVKPKKQRVS KKHRRLAQDP QHEQG--GLE ENSBTAP00000025002/1-1228 LDAIPLAIAR LDNSAAKHKL SIKPKNQRVS RKHRRLVGDR QNEHG--GLL bmy_15137T0/1-1108 LDAIPLAIAR LDNSAAKHKL AIKPKKQRVS RKHRRLVGDR QNEHG--GFP BACU000666/1-1254 LDAIPLAIAR LDNSAAKHKL SIKPKKQRVS RKHRRLVGDR QNEQG--GFR 201 250 ENSTTRP00000005721/1-923 PEMSLLHDIG PGTTIKV-CV VSPDQLFS-- ---------- -------RQV ENSP00000423366/1-1233 SRPCLDQNGH PGEDKPTWHE EEPNPLDSEE ERRRQEDYWR ELEAKCKRQK ENSBTAP00000025002/1-1228 HQLSLDQNGH PGEDKPIWHE REPEPLDSEE EKRRQEEYWR ELEAKCKRQK bmy_15137T0/1-1108 HQLSLDQNGH PGEDKPIWHE EEPEALDSEE EKRRQEEYWR ELEAKCKRQK BACU000666/1-1254 HQLSLDQNGH PGEDKPIWHE EEPEALDSEE EKRRQEEYWQ ELEAKCKRQK 251 300 ENSTTRP00000005721/1-923 SDTSVSPRTS DGSVAPVA-- ---------- ---------- ---------- ENSP00000423366/1-1233 AEAAEKRRLE EQRLQALERR LWEENRRQE- LLEEEGEGQE P--PLEAERA ENSBTAP00000025002/1-1228 AEAAERRRLE EQRLQALERR LWEENRRQEF LEEEEEEEEE REIQLEAKKR bmy_15137T0/1-1108 AEAAERRRLE EQRLQALERR LWEEKRRQEE LLEEEGEEEE GEVQL----- BACU000666/1-1254 AEAAERRCLE EQRLQALERR LWEEKRRQEE LLEEEGEEEE GEVQLEAAKR 301 350 ENSTTRP00000005721/1-923 ---DFDYPPE FSSCLDNSA- ---------- ---------- ---------- ENSP00000423366/1-1233 PREEQQRSLE APGWEDAERR EREERERLEA EE-------- ---------- ENSBTAP00000025002/1-1228 QREEETQSLE EPGSQGPEQ- -REERQRLEE EERQRLEEE- ---------- bmy_15137T0/1-1108 ---EAAQSPE EPGCRDPERR EQDEGGRLEA EEPRRLEEEA WRLEEEARRL BACU000666/1-1254 QREEAAQSPE EPGCRDPERR EQDEGGPPEA EEPRRLEEEA WRLEEEARRL 351 400 ENSTTRP00000005721/1-923 AKHKLLVK-- -------PRN QRCSKMRRLS SRAQSESLSD LTCTPEEEEY ENSP00000423366/1-1233 ERRRLQAQ-- ----AQAEER RRLEEDARLE ERRRQEEEEG RC-------A ENSBTAP00000025002/1-1228 ERQRELEE-- ---EKQMEEL RRQEELRRQE ELRRLEELRR ---------Q bmy_15137T0/1-1108 ERRAQQEELE ARGRQEAEKL RREEEERALE ELGRLEEQRR RAAEKQRLEE BACU000666/1-1254 ERRAQEEELE ARGRQEAEEL RREEEERALE ELRRLEEQRR RAAEKQRLEE 401 450 ENSTTRP00000005721/1-923 DEKPLPKVST EEKPSSGQQ- EGGQDRGAEP GGQATM---- -LPPVGPRAR ENSP00000423366/1-1233 EELK----RQ EEEEAEGW-- EELEQQEAEV QGPPEA---- -LEETGEGRR ENSBTAP00000025002/1-1228 EELR----RQ EELEAQRWRE EEEVRKREEL KKREDL---- -----EAKRR bmy_15137T0/1-1108 EERRLEELRR QELEAQRQRE EEEEKRMQEL RRQEELEAQR RWEDAEAKRR BACU000666/1-1254 ERLR-EGLRW QELEAQRQR- EEEEKRMQEL RRQEELEAQR LREDAEAKSR 451 500 ENSTTRP00000005721/1-923 RA---RLQHC PAFTASTEDE NPPRENPSSL LATPEVMEVT EPV------- ENSP00000423366/1-1233 GAEEEDLGEE -------EEE GQAHLEDWRG QLSELLNDFE ERLEDQERLK ENSBTAP00000025002/1-1228 QEVEKKLQEA P----RVEEE NQPQLDHKNG LRSPFQSDFA EKAEEQDHLK bmy_15137T0/1-1108 QEAEKKLQEA P----RVEEE NQPLLDHKRG LRSPFQSDIA EKA-EQEHLK BACU000666/1-1254 QEAEKKLQEA P----RVEEE NQPLLDHKRG LRSPFQSDIS EKA-EQEHLK 501 550 ENSTTRP00000005721/1-923 -SSPHPRSES PSCPEGSPHP HPNPDNENPR --EELSLETR CPPGGDTADE ENSP00000423366/1-1233 PEGQREHSEE PGICEEQ-NP EAERRREQQG RSGDFQGADR PGPEEKREEG ENSBTAP00000025002/1-1228 LEKLRENSEK PSIWVKQSQE ATETSGEQPR KQEDVPGDRG CGRQEMREET bmy_15137T0/1-1108 LEKPRENSEE PSIWVKQSQE ATEPSGEQPG KQGDVPGDHR CGWQEEREET BACU000666/1-1254 LEKPRENSEE PSIWVKQSQE ATEPSGEQPG NQGDVPGDHR CGWQEEREET 551 600 ENSTTRP00000005721/1-923 VVCASGDVEG RLSPCIPEG- --DTTPPEPG PIAT---WE- ---------- ENSP00000423366/1-1233 DTEPLLKQEG PVEAAQPPVE RKEAAALEQG RKVEELRWQE VDERQTMPRP ENSBTAP00000025002/1-1228 NMQLPQKQEA QVEEMLVPGE KKEAATPETD RKLEELRWQE VDERQTMPRP bmy_15137T0/1-1108 NAEPPQKQEA QVEEALAPGE KKEAAAPETD RKVEELRWQE VDERQTMPRP BACU000666/1-1254 NAELHQKQEA QVEEALAPGE KKEAAAPETD RKVEELRWQE VDERQTMPRP 601 650 ENSTTRP00000005721/1-923 -TPSGPNGPD HTGPKEVRLT LDLGSRGAGP AAPAPSPPAP KS-------- ENSP00000423366/1-1233 YTFQVSSGGK QILFPKVNLS PVTPAKDTGL TAAPQEPKAP KASPVQHALP ENSBTAP00000025002/1-1228 YTFQVSSGGK QILFPKVNLS PVKPMKDEGL TSAPQEPKAP KASPASHALP bmy_15137T0/1-1108 YTFQVSSGGK QILFPKVNLS PVKPMKDEGL ASGSQEPKAP KASPASHALP BACU000666/1-1254 YTFQVSSGGK QILFPKVNLS PVKPMKDEGL ASGPQEPKVP KASPASHALP 651 700 ENSTTRP00000005721/1-923 ---CLKH--- ---------- -------KAS AASENLGAAP SPPASASPAE ENSP00000423366/1-1233 SSLSVPHTAI LVTGAQLCGP AVNLSQIKDT ACKSLLGL-E EKKHAEAPAG ENSBTAP00000025002/1-1228 STLSIPHTAI LVTGAQLCGP AVNLSQIKDT ACKSLLGLSE EKKLVDVPAL bmy_15137T0/1-1108 SSLSIPHTAI LVTGAQLCGP AVNLSQIKDT ACKSLLGLSE EKKHVDVPAL BACU000666/1-1254 SSLSIPHTAI LVTGAQLCGP AVNLSQIKDT ACKSLLGLSE EKKHVDVPAL 701 750 ENSTTRP00000005721/1-923 APAPRSLDQE AAPPEPPRAE REGSPTEAAA PE------RK MERGGREARA ENSP00000423366/1-1233 ENPPRGPGDA RAGSGKAKPR QESPSSASAL AEWASIRSRI LKNAESDPRS ENSBTAP00000025002/1-1228 ENPPRALGEP RAGSAKTRPP PESPSSAAAL AEWASIRSRI LKSSESDQR- bmy_15137T0/1-1108 ENPPRAPGDP RAGSGKTRPS QESPSSVAAL AEWASIRSRI LKNAESDQR- BACU000666/1-1254 ENPPRAPGDP RAGSGKTRPS QESPSSMAAL AEWASIRSRI LKNAESDQR- 751 800 ENSTTRP00000005721/1-923 AKKFSVSSGR EWPRAGGRLL EPRGPAVRLP LLRSG----P AWK--SEAAL ENSP00000423366/1-1233 SERDQLRPGD ESTPRGRC-- DSRGNQRKTP PVNAKFSIMP AWQKFSDGGT ENSBTAP00000025002/1-1228 GEREQSRAGD EHTPRGRC-- DSRGNLRRTP PVNAKFSIKP AWQKFSDGGG bmy_15137T0/1-1108 GERDESQPGD EHTPRGRC-- DSRGNLRRTP PVNAKFSIKP AWQKFSDGGG BACU000666/1-1254 GERDESRPGD EHTPRGRC-- DSRGNLRRTL PVNAKFSIKP AWQKFSDGGW 801 850 ENSTTRP00000005721/1-923 EDLPAPAEPQ GLK----PGP RKP--PAPAE RGSPDAATAD PGPAARERPA ENSP00000423366/1-1233 ETSKQSTEAE SIRKRPMLGP SEETAPQPPP AGVRELGKGP EKSEMHREPA ENSBTAP00000025002/1-1228 -------EGE SIRKRSGPGP SEEAVPQPPA IDTKEALKDA EKPRAHQEPT bmy_15137T0/1-1108 ETSKQNTEAE GIRKRSLPGP SEEARPQLAA ADTKEPVKGA EKLGAHQEPT BACU000666/1-1254 ETSKQNTEAE SIRKRSLPGP SEEARPQLAA ADTKEPVKGA EKPGAHQEPT 851 900 ENSTTRP00000005721/1-923 ---------- ---------- ---------- ---------- ---------- ENSP00000423366/1-1233 DTTEGCKFAK DLPSFLVPSL PYPPQKVVAH TEFTTSSDSE TANGIAKPDP ENSBTAP00000025002/1-1228 DTTEGCKFAK DLPSFLVPGL PYPPQKAVAQ VEPVTTSDSQ TTDGAGKSEP bmy_15137T0/1-1108 DTTEGCKFAK DLPSFLVPSL PYPPQKAVAQ AEPVVTSDSE TTGGVGKPEP BACU000666/1-1254 DTTEGCKFAK DLPSFLVPSL PYPPQKAVAQ AEPVVTSDSE TTGGVGKPEP 901 950 ENSTTRP00000005721/1-923 ---GGD--GS PFPVKLRSTS LSFKHREAPC PEGRGIKRYS A--------- ENSP00000423366/1-1233 VMPGGEEKAS PFGIKLRRTN YSLRFNCDQQ AEQKKKKRHS STGDSADAGP ENSBTAP00000025002/1-1228 TMPGGEDKAS LFGIKLRRTN YSLRFHCDQQ TEQKKKKRHS STGDSIDGAP bmy_15137T0/1-1108 VMPGGEDKAS PFGIKLRRTN YSLRFHCDQQ TEQKKKKRHG SMGDSINGAP BACU000666/1-1254 VMPGGEDKAS PFGIKLRRTN YSLRFHCDQQ TEQKKKKKHG SMGDSISGAP 951 1000 ENSTTRP00000005721/1-923 ---------- --EVRLEKGG LTLLSRNDKG P--------- ---------- ENSP00000423366/1-1233 PAAGSARGEK EMEGVALKHG PSLPQERKQA PSTRRDSAEP SSSRSVPVAH ENSBTAP00000025002/1-1228 SAPGSTHGEP ETEAAALKPG PLLPPERKPA PAPWKDSSES PPSLSPPVAQ bmy_15137T0/1-1108 SAPGSTAGER ETEAAALKHG PSLPPERKQA PAPWKDSAER PPSQSPLAAQ BACU000666/1-1254 SAPGSTAGER ETEAAALKHG LSLPPERKQA PAPWKDSAES PPSQSPLAAQ 1001 1050 ENSTTRP00000005721/1-923 PGTGPAARGA RSPNEPGKAK TRSTEQLSSK PPLPRKPLLQ TL---TLPQL ENSP00000423366/1-1233 PG--PPPASS QTP-APEHDK AANKMPLAQK PALAPKPTSQ TPPASPLSKL ENSBTAP00000025002/1-1228 PG--PPLAGS QPP-APEQDK AANRLPLSQK PALAPKPAGQ TPPPSPLSKV bmy_15137T0/1-1108 PG--PPAASS QPP-APEQDR AANRTPLAQK PALAPKPAGQ TPPSSPISKL BACU000666/1-1254 PG--PPAASS QPP-APEQDR AANRTPLAQK PALAPKPAGQ TPPSSPISKL 1051 1100 ENSTTRP00000005721/1-923 PAP------- -----PDASP RDPEKVG-PS ADPRKESQAA ERKSPHRAAE ENSP00000423366/1-1233 SRPYLVELLS RRAGRPDPEP SEPSKEDQES SDRRPPSPPG PEERKGQKRD ENSBTAP00000025002/1-1228 SRPYLVELLT RRVGKPEMEP SEPCKEGRDS GWP--PSPPP PEERKEQKRD bmy_15137T0/1-1108 SRPYLAELLA RRAGKPDPEP GEPCKEGRDN GDPRTPSAPP TEERKDQKRD BACU000666/1-1254 SRPYLVELLA RRAGKPDLEP GEPCKEGRDN GDPRIPSALP TEERKDQKRD 1101 1150 ENSTTRP00000005721/1-923 KAAGPGTDGQ PAPPWITVGR QKRRGAPEQP SSQED----- ---------- ENSP00000423366/1-1233 EEEEA-TERK PASPPLPATQ QEKPSQTPEA GRKEKPMLQS RHSLDGSKLT ENSBTAP00000025002/1-1228 KEEEVETERK PASPVPSTG- QEKPVPTPEA GRKEKPMLQS RHSLDGSKLV bmy_15137T0/1-1108 EEEEVETERK PVSPAPSAAW QEKPSATPEA GRKGA----- ---------- BACU000666/1-1254 EEEEVETERK PASPAPSAAR QEKPSATPEA GRKEKPTLQS RHSLDGSKLA 1151 1200 ENSTTRP00000005721/1-923 ------KPGA GTLKSDTGRP AKAPERTQES VKQADFVRSK SFLMAPAKPT ENSP00000423366/1-1233 EKVETAQPLW ITLALQKQKG FREQQATREE RKQAREAKQA EKLSKENVSV ENSBTAP00000025002/1-1228 EKVETAQPLW ITLALQKQKG FREQQATREE RKQAREAKQA EKLAREQVSV bmy_15137T0/1-1108 ---------- ---------- ---------- ---------- ---------- BACU000666/1-1254 EKVETAQPLW ITLALQKQKG FREQQATREE RKQAREAKQA EKLSKENVSV 1201 1250 ENSTTRP00000005721/1-923 VDQRQGTKLH LQEGLQRGIS LSHQNLAQSA VMMEKELHQL KRASYASTD- ENSP00000423366/1-1233 SVQPGSSSVS RAGSLHKSTA LPEEKRPETA VSRLERREQL KKANTLPTSV ENSBTAP00000025002/1-1228 TPQPGSSSVS RASSLHKPTT QPEEKKPETP VSRLERREQL KKANTLPTSV bmy_15137T0/1-1108 ---------- ---------- ---------- ---------- ---------- BACU000666/1-1254 SPQPGSSSVS RAGSLHKSTA QPEEKKPETA ASRLERREQL KKANTLPTSV 1251 1300 ENSTTRP00000005721/1-923 ---------- ---------- ---------- ---QPSWMEL ARKKSQAWSD ENSP00000423366/1-1233 T--VEISDSA PPAPLVKEVT KRFSTPDAAP VSTEPAWLAL AKRKAKAWSD ENSBTAP00000025002/1-1228 TDPVEISDSA PPAPLVKEVT KRFSNPDAAP VSTEPAWLAL AKRKAKAWSD bmy_15137T0/1-1108 ---------- ---------- ---------- ---------- ---------- BACU000666/1-1254 T--VEISDSA PPAPLVKEVT KRFSTPDAAP VSTEPAWLAL AKRKAKAWSD 1301 1350 ENSTTRP00000005721/1-923 MPQIIK ENSP00000423366/1-1233 CPQIIK ENSBTAP00000025002/1-1228 CPQIIK bmy_15137T0/1-1108 ------ BACU000666/1-1254 CPQIIK