KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:24:35 2014 Check: 00 .. Name: bmy_06164T0/1-444 Len: 505 Check: 3889 Weight: 1.00 Name: BACU015324/1-222 Len: 505 Check: 4100 Weight: 1.00 Name: ENSP00000217131/1-303 Len: 505 Check: 5833 Weight: 1.00 Name: ENSTTRP00000007953/1-303 Len: 505 Check: 7286 Weight: 1.00 Name: ENSBTAP00000025007/1-304 Len: 505 Check: 8695 Weight: 1.00 // 1 50 bmy_06164T0/1-444 MGKVLSKIFG NKEMRILMLG LDAAGKTTIL YKLKLGQSVT TIPTVGFNVE BACU015324/1-222 ---------- ---------- ---------- ---------- ---------- ENSP00000217131/1-303 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007953/1-303 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025007/1-304 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_06164T0/1-444 TVTYKNVKFN VWDVGGQDKI RPLWRHYYTG TQGLIFVVDC ADRDRIDEAR BACU015324/1-222 ---------- ---------- ---------- ---------- ---------- ENSP00000217131/1-303 ---------- ------MARR GPGWR----- ---------- ---------- ENSTTRP00000007953/1-303 ---------- ------MASS GP-AQ----- ---------- ---------- ENSBTAP00000025007/1-304 ---------- ------MASS GPLVP----- ---------- ---------- 101 150 bmy_06164T0/1-444 QELHRIINDR EMRDAIILIF ANKQDLPDAM KPHEIQEKLG LTRIRDRNCF BACU015324/1-222 ---------- ---------- ---------- ---------- ---------- ENSP00000217131/1-303 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000007953/1-303 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025007/1-304 ---------- ---------- ---------- ---------- ---------- 151 200 bmy_06164T0/1-444 SVILLNGRVS SHILLSDGCT QHTELLRITE HMKQLILTIS LLMTMRGANL BACU015324/1-222 ---------- ---------- ---------- ---------- ---------- ENSP00000217131/1-303 ---------- ---------- ---------- ---P-LLLLV LL-------- ENSTTRP00000007953/1-303 ---------- ---------- ---------- ---LVLLLLV LP-------- ENSBTAP00000025007/1-304 ---------- ---------- ---------- ---PLLLLLV LL-------- 201 250 bmy_06164T0/1-444 TFPYDRWIFP IAYIATLAAG GAAQAGFHFR PG---CRPLR GNQLTQLGRK BACU015324/1-222 ---------- ---------- --AQAGFHFR PG---CRPLR GNQLTQLGRK ENSP00000217131/1-303 ---------- ---------A GAAQGGLYFR RGQTCYRPLR GDGLAPLGRS ENSTTRP00000007953/1-303 ---------- ---------A GAARAGLHFR PGRGCYRPLR GDQLTQLGRR ENSBTAP00000025007/1-304 ---------- ---------A GAARAGLHFR PGRGCYRPLR GDRLTQLGRR 251 300 bmy_06164T0/1-444 TYPRPHEHLS PSDLPKSWDW RNADGVNYAR VTRSQHISQ- ------GGGT BACU015324/1-222 TYPRPHEHLS PSDLPKSWDW RNADGVNYAR VTRSQHIPQ- ------DSGT ENSP00000217131/1-303 TYPRPHEYLS PADLPKSWDW RNVDGVNYAS ITRNQHIPQY CGSCWAHAST ENSTTRP00000007953/1-303 TYPRPHEYLS LSDLPKSWDW RNVNGVNYAS VTRNQHIPQY CGSCWAHGST ENSBTAP00000025007/1-304 TYPRPHEYLS PSDLPKSWDW RNVNGVNYAS VTRNQHIPQY CGSCWAHGST 301 350 bmy_06164T0/1-444 SPTADRRPNK RKGAWPSA-- --QHVNDGGN AGSWEAGDHL QGWEHARPRR BACU015324/1-222 SATADRSPNK RKGASPSA-- --QHVIDGGS AGSWEAGDHL QGGGGARPRR ENSP00000217131/1-303 SAMADRINIK RKGAWPSTLL SVQNVIDCGN AGSCEGGNDL SVWDYAHQHG ENSTTRP00000007953/1-303 SAMADRINIK RKGAWPSVLL SVQHVIDCGN AGSCEGGNDL PVWEYAHRHG ENSBTAP00000025007/1-304 SAMADRINIK RKGAWPSTLL SVQHVLDCGD AGSCEGGNDL PVWEYAHRHG 351 400 bmy_06164T0/1-444 IPDETRSNDQ AKDQECDKFN QCGTCTEFKE RRVIQNYTLW KVGDYGSVSG BACU015324/1-222 IPDETRSNDQ AKDQECDKFN QCGTCTEFKE RRVIQNYTLW KVGDYGSVSG ENSP00000217131/1-303 IPDETCNNYQ AKDQECDKFN QCGTCNEFKE CHAIRNYTLW RVGDYGSLSG ENSTTRP00000007953/1-303 IPDETCNNYQ AKDQECDKFN QCGTCTEFGE CHVIKNYTLW KVGDYGSVSG ENSBTAP00000025007/1-304 IPDETCNNYQ AKDQECDKFN QCGTCTEFKE CHVIKNYTLW KVGDYGSLSG 401 450 bmy_06164T0/1-444 REKVMAEIYT SGPIRGGTMA TEKMSNYTGG IYAEYHDKAY INHIISVAGW BACU015324/1-222 REKVMAEIYT NGPIRGGTLA TEKMSNYTGG IYAEYHDKAY INHIISVAGW ENSP00000217131/1-303 REKMMAEIYA NGPISCGIMA TERLANYTGG IYAEYQDTTY INHVVSVAGW ENSTTRP00000007953/1-303 REKMMAEIYA KGPISCGIMA TEKMSNYTGG IYAEYRNRAY INHIVSVAGW ENSBTAP00000025007/1-304 REKMMAEIYT NGPISCGIMA TEKMSNYTGG IYSEYNDQAF INHIVSVAGW 451 500 bmy_06164T0/1-444 GVSDGMEH-- ---------- ---------- ---------- ---------- BACU015324/1-222 GVSDGMEH-- ---------- ---------- ---------- ---------- ENSP00000217131/1-303 GISDGTEYWI VRNSWGEPWG ERGWLRIVTS TYKDGKGARY NLAIEEHCTF ENSTTRP00000007953/1-303 GVSHGTEYWI VRNSWGEPWG ERGWMRIVTS AYRGGKGADY NLAIEESCTF ENSBTAP00000025007/1-304 GVSDGMEYWI VRNSWGEPWG EHGWMRIVTS TYKGGEGARY NLAIEESCTF 501 550 bmy_06164T0/1-444 ----- BACU015324/1-222 ----- ENSP00000217131/1-303 GDPIV ENSTTRP00000007953/1-303 GDPIV ENSBTAP00000025007/1-304 GDPIV