KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:24:43 2014 Check: 00 .. Name: bmy_15549T0/1-392 Len: 422 Check: 5231 Weight: 1.00 Name: ENSP00000358925/1-333 Len: 422 Check: 5865 Weight: 1.00 Name: ENSTTRP00000009056/1-363 Len: 422 Check: 7310 Weight: 1.00 Name: ENSBTAP00000025034/1-326 Len: 422 Check: 8106 Weight: 1.00 // 1 50 bmy_15549T0/1-392 KTPSAGGEAS QKVKTGWCGA PGSKLTFAPA GWNMEDLEED VKFIADETLD ENSP00000358925/1-333 ---------- ---------- ---------- ---MEDLEED VRFIVDETLD ENSTTRP00000009056/1-363 ---------- ---------- ---------- ---MEDLEED VKFIADETLD ENSBTAP00000025034/1-326 ---------- ---------- ---------- ---MEDLEED VKFIADETLD 51 100 bmy_15549T0/1-392 FGGLSPSDSR EEEDTAVSVX PEKPLRRGLS HRSDPNAVAP APQSLRLSLG ENSP00000358925/1-333 FGGLSPSDSR EEEDITVLVT PEKPLRRGLS HRSDPNAVAP APQGVRLSLG ENSTTRP00000009056/1-363 FGGLSPSDSR EEEDTAVSVT PEKPLRRGLS HRSDPNAVAP APQSLRLSLC ENSBTAP00000025034/1-326 FGGLSPSDSR EEEDVAVLVT PEKPLRRGLS HRSDPNAVAP TPQGLRLSLG 101 150 bmy_15549T0/1-392 PLSPEKLEEI LSEANRLATH LEQCALQERE NTGEGPGPRR VKPSPRRETF ENSP00000358925/1-333 PLSPEKLEEI LDEANRLAAQ LEQCALQDRE SAGEGLGPRR VKPSPRRETF ENSTTRP00000009056/1-363 PLSPEKLEEI LSEANRLAAH LEQCALQERE NTGEGPGPRR VKPSPRRETF ENSBTAP00000025034/1-326 PLSPEKLEEI LHEANRLAAQ LEQCALKERE NTGEGSGPRR VKPSPRRETF 151 200 bmy_15549T0/1-392 VLKDSPVRDL LPTVSSLARS TPSPSSLTPR LRSSDRKLSV RALRATSGKR ENSP00000358925/1-333 VLKDSPVRDL LPTVNSLTRS TPSPSSLTPR LRSNDRKGSV RALRATSGKR ENSTTRP00000009056/1-363 VLKDSPVRDL LPTVSSLSRS TPSPSSLTPR LRSSDRRVSV RALRATSGKR ENSBTAP00000025034/1-326 VLKDSPVRDL LPTVSSLARS TPSPSSLTPR LRSSDRKGSI RALRATSGKK 201 250 bmy_15549T0/1-392 PSSMKRESPT CNLFPASKSP ASSPLARSTP PVRGKAGPSG RATASEKTWA ENSP00000358925/1-333 PSNMKRESPT CNLFPASKSP ASSPLTRSTP PVRGRAGPSG RAAAS----- ENSTTRP00000009056/1-363 PSSMKRESPT CNLFPASKSP ASSPLARSTP PVRGKAGPSG RATASEKTWA ENSBTAP00000025034/1-326 PSSVKRESPT CNLFPASKSP ASSPLARSAP PVRGKAGPSG RATAS----- 251 300 bmy_15549T0/1-392 AKLWAH---- ---------- -----LPLSD QSWLHSLLPA TLSACLGRRE ENSP00000358925/1-333 ---------- ---------- -----PPTPI RSVLAPQPST SNSQRLPRPQ ENSTTRP00000009056/1-363 AKLWVSGRRE DVELTLKFLC FSPPGPPTSV RPVLAPQPST SNSQRLSRPQ ENSBTAP00000025034/1-326 ---------- ---------- -----PPTPV RPVLAPQPPA GSSQRPSRPQ 301 350 bmy_15549T0/1-392 QLL-----NL PLDCLFRRPF PGLPAGCHSP AGVYHPAKVP FLQIPCQLGK ENSP00000358925/1-333 GAAAKSSSQL PIPSAIPRPA SRMPLTSRS- ---------- ---VPPGRGA ENSTTRP00000009056/1-363 GAAAKPSSRL PVPSAIPRPA SRMPLTSRS- ---------- ---VPSSKGA ENSBTAP00000025034/1-326 GAAAKPSSRL PVPSAVPRPG NRMPLASRS- ---------- ---VPSSKGA 351 400 bmy_15549T0/1-392 DFQDQVPQGT EFLFLSDQIF PSLVPVAAVC SPPGKLQSQD LPGKE----- ENSP00000358925/1-333 LPPDSLSTRK GL-------- ----PRPSTA GHRVRESGHK VPVSQRLNLP ENSTTRP00000009056/1-363 LPPDSLPARK GL-------- ----PRPSAA GHRGEKNGHK VPVSQRPNLP ENSBTAP00000025034/1-326 PPSDSLSARK GL-------- ----PRPSAA GHR------- VPVSQRPNLP 401 450 bmy_15549T0/1-392 IRTASKNSVA NHYSHCLDSP L- ENSP00000358925/1-333 VMGATRSNLQ PPRKVAVPGP TR ENSTTRP00000009056/1-363 IPGAGRSNLQ PPRKVAVPGP TR ENSBTAP00000025034/1-326 ISGAGRSNLQ PPRKVAVPGS TR