KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:24:44 2014 Check: 00 .. Name: bmy_15548T0/1-351 Len: 412 Check: 1841 Weight: 1.00 Name: ENSTTRP00000016594/1-350 Len: 412 Check: 4496 Weight: 1.00 Name: ENSP00000349678/1-354 Len: 412 Check: 2047 Weight: 1.00 Name: ENSBTAP00000025035/1-354 Len: 412 Check: 3751 Weight: 1.00 // 1 50 bmy_15548T0/1-351 ---------- ---------M DLVDLTPVAA GRGK------ ---------- ENSTTRP00000016594/1-350 MEAATALEVA -GSTLKVKEA SLADADGAQA SPRRGAVSPI PQLLPPTEEH ENSP00000349678/1-354 MEAATAPEVA AGSKLKVKEA SPADAEPPQA SPGQGAGSPT PQLLPPIEEH ENSBTAP00000025035/1-354 MEAATAPEAA LRPTLKVKEA SPADADGPQA SPRRGTGSPL SQLLPPIEEH 51 100 bmy_15548T0/1-351 ---------- ----RPLGAA HSLLPISQGK PQPQAICTHD GCALDASHVT ENSTTRP00000016594/1-350 PKIWLPQAQR QTYIQKVGDT LNLLIPFQGK PQPQAMCTHD GCALDASHVS ENSP00000349678/1-354 PKIWLPRALR QTYIRKVGDT VNLLIPFQGK PKPQAIWTHD GCALDTRRVS ENSBTAP00000025035/1-354 PKIWLPRALR QTYIRKVGDT VNLLIPFQGK PKPQAIWTRD GCALDTSRVS 101 150 bmy_15548T0/1-351 RWNGEWDSIL FIREAQRADS GHYQLRVQLG GLEATTTXDT LVIGTVRGMG ENSTTRP00000016594/1-350 MRNGERDSNL FIREAQCADL GHYQLHVQLG GLEATATTDT LVI------- ENSP00000349678/1-354 VRNGEQDSIL FIREAQRADS GRYQLRVQLG GLEATATIDI LVI------- ENSBTAP00000025035/1-354 VRNGERDSIL FIREAQRADS GRYQLSVQLG GLEATATIDI LVI------- 151 200 bmy_15548T0/1-351 DDVVLGGSHP SLKRNQHREP GKRGCGMQRE ARLSSEYPVG GCLGLQRYPG ENSTTRP00000016594/1-350 -------ERP ---------- -----GSPQS IKLVDVW--G SSATLEWTLP ENSP00000349678/1-354 -------ERP ---------- -----GPPQS IKLVDVW--G FSATLEWTPP ENSBTAP00000025035/1-354 -------ERP ---------- -----GPPQS IKLVDVW--G SSATLEWTPP 201 250 bmy_15548T0/1-351 VDSAPRHGNA LLGYTVQKAD TKSGLWLTAL ERYHRASCTV SNLIVGNSYA ENSTTRP00000016594/1-350 QDTG-----T LLGYVVQKAD TKSGLWLTVL ERYHRASRTV SDLIVCNSYA ENSP00000349678/1-354 QDTG---NTA LLGYTVQKAD TKSGLWFTVL EHYHRTSCIV SDLIIGNSYA ENSBTAP00000025035/1-354 QDTG---NAA LLGYTVQKAD TKSGLWFTVL ERCRRASCTV PNLIVGNSYT 251 300 bmy_15548T0/1-351 LRVFAENQCG LSQTASVTAD LAHIQRA--- ---------D FSEAPKFTQP ENSTTRP00000016594/1-350 FQVFAENQCG LSQTASVTAD PAHIQKAATV YKTEGFVQ-D FSEAPKFTQP ENSP00000349678/1-354 FRVFAENQCG LSETAPITTD LAHIQKAATV YKTKGFAQRD FSEAPKFTQP ENSBTAP00000025035/1-354 FRVFAENQCG LSENAPITAD LAHIQKAATV YRTEGFAQRD FSEAPKFTQP 301 350 bmy_15548T0/1-351 LADCTTVXGC DTQLFCCVHA SPKPKTIWLK NKMDIQGNPK YRALTHLGIC ENSTTRP00000016594/1-350 LADCTTVIGC DTQLFCCIHA SPKPKIIWLK NKMDIQGNPK YRALTHLGIC ENSP00000349678/1-354 LADCTTVTGY NTQLFCCVRA SPRPKIIWLK NKMDIQGNPK YRALTHLGIC ENSBTAP00000025035/1-354 LADCTTVIGY DTQLFCCVRA SPKPKIIWLK NKMDIQGNPK YRALTHLGIC 351 400 bmy_15548T0/1-351 SLEIHKPGPF DGGIYTCKAV NPLGEASVDC RVDVKGKGRT RTLGCNHLLS ENSTTRP00000016594/1-350 SLEIHKPGPF DGGIYICKAV NPLGEASVDC RVDVKAPN-- ---------- ENSP00000349678/1-354 SLEIRKPGPF DGGIYTCKAV NPLGEASVDC RVDVKVPN-- ---------- ENSBTAP00000025035/1-354 SLEIRKPGPF DGGIYTCKAV NPLGEASVDC RVDVKAPN-- ---------- 401 450 bmy_15548T0/1-351 PQVGKSRAET QA ENSTTRP00000016594/1-350 ---------- -- ENSP00000349678/1-354 ---------- -- ENSBTAP00000025035/1-354 ---------- --