KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:24:44 2014 Check: 00 .. Name: ENSTTRP00000010228/1-294 Len: 344 Check: 2145 Weight: 1.00 Name: ENSBTAP00000025036/1-311 Len: 344 Check: 4730 Weight: 1.00 Name: bmy_01706T0/1-300 Len: 344 Check: 6804 Weight: 1.00 Name: BACU001218/1-328 Len: 344 Check: 3159 Weight: 1.00 // 1 50 ENSTTRP00000010228/1-294 MDFLMSGLAA CGACLFTNPL EVVKTRMQLQ GELQAPGTYR RHYRNVFHAF ENSBTAP00000025036/1-311 MDFLMSGLAA CGACLFTNPL EVVKTRMQLQ GELRAPGTYQ RHYRNVFHAF bmy_01706T0/1-300 MDFLMSGLAA CGACLFTNPL EVVKTRMQLQ GELQAPGTYR RHYRNVFHAF BACU001218/1-328 MDFLMSGLAA CGACLFTNPL EVVKTRMQLQ GELQAPGTYR RHYRNVFHAF 51 100 ENSTTRP00000010228/1-294 ITIGKVDGLA ALQKGLAPAL LYQFLMNGIR LGTYGLAEAG GCLHTAEGTL ENSBTAP00000025036/1-311 ITIGKVDGLA ALQRGLAPAL LYQFLMNGIR LGTYGLAEAG GYLHTAEGTL bmy_01706T0/1-300 ITIGKVDGLA ALQKGLAPAL LYQFLMNGIR LGTYGLAEAG GCLHTAEGTL BACU001218/1-328 ITIGKVDGLA ALQKGLAPAL LYQFLMNGIR LGTYGLAEAG GCLHTAEGTL 101 150 ENSTTRP00000010228/1-294 SPVRSAAAGA LAGVMGAYLG SPIYMVKTHL QAQAATEIAV GHQYNHQGMF ENSBTAP00000025036/1-311 NPVRSAAAGA LAGVMGAYLG SPIYMVKTHL QAQAATEIAV GHQYNHQGMF bmy_01706T0/1-300 SPVRSAAAGA LAGVMGAYLG SPIYMVKTHL QAQAATEIAV GHQYNHQGMF BACU001218/1-328 SPVRSAAAGA LAGVMGAYLG SPIYMVKTHL QAQAATEIAV GHQYNHQGMF 151 200 ENSTTRP00000010228/1-294 QALIKIGQKY GLVGLWRGAL GGLPRVIVGS STQLCT---- ---------- ENSBTAP00000025036/1-311 QALTKIGQKH GLVGLWRGAL GGLPRVIVGS STQLCT---- ---------- bmy_01706T0/1-300 QALIKIGQKH GLVGLWRGAL GGLPRVIVGS STQLCT---- ---------- BACU001218/1-328 QALIKIGQKH GLVGLWRGAL GGLPRVIVGS STQLCTFSST KDLMTQREVH 201 250 ENSTTRP00000010228/1-294 ---------- ----FSSTKD LVTQWEIFPP QSWKVALVAA MVSSIAVVLA ENSBTAP00000025036/1-311 ---------- ----FSSTKD LMTQWEIFPP QSWKVALAAA MVSGIAVVLA bmy_01706T0/1-300 ---------- ----FSSTKD LMTQREIFPP QSWKVALVAA MVSGIAVVLA BACU001218/1-328 LCPQGLPLST QLCTFSSTKD LMTQREIFPP QSWKVALVAA MVSGIAVVLA 251 300 ENSTTRP00000010228/1-294 MTPFDVVSTR LYNQPTDAQG KN---RGPKS SEAACSISAS LLGTKDVGIV ENSBTAP00000025036/1-311 MTPFDVVSTR LYNQPTDAQG KGLMYRGLLD ALLQTARTEG IFANQH-SLD bmy_01706T0/1-300 MTPFDVVSTR LYNQPTDAQG KGLMYRGLLD ALLQTARIEG IWGMYK-GIG BACU001218/1-328 MTPFDVVSTR LYNQPTDAQG KGLMYRGLLD ALLQTARIEG IWGMYK-GIG 301 350 ENSTTRP00000010228/1-294 KG-------- ---------- QTGHQLFKVT QAPGRNQLLG TQS- ENSBTAP00000025036/1-311 SSDSIFYYRE TSDQMTFHPS EGDRQHHSPF DFSGLNH--- -YKG bmy_01706T0/1-300 AS----YFR- ---------- LGPHTILSLF FWDQLRTLYY MYTK BACU001218/1-328 AS----YFR- ---------- LGPHTILSLF FWDQLRTLYY MYTK