KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:24:49 2014 Check: 00 .. Name: ENSTTRP00000003826/1-998 Len: 1183 Check: 448 Weight: 1.00 Name: ENSP00000315713/1-1049 Len: 1183 Check: 7640 Weight: 1.00 Name: ENSBTAP00000025062/1-1010 Len: 1183 Check: 9446 Weight: 1.00 Name: bmy_08269T0/1-1015 Len: 1183 Check: 1965 Weight: 1.00 Name: BACU008374/1-1141 Len: 1183 Check: 5586 Weight: 1.00 // 1 50 ENSTTRP00000003826/1-998 ---------- ---------- ---------- ---------- ---------- ENSP00000315713/1-1049 ---------- ---------- ---------- ---------- --MALVTLQR ENSBTAP00000025062/1-1010 ---------- ---------- ---------- ---------- ---------- bmy_08269T0/1-1015 ---------- ---------- ---------- ---------- ---------- BACU008374/1-1141 MGSSWLGAGY WATSCFSSQF LIHTLLLIPE AHSKARRSKV IRGTSAVLLP 51 100 ENSTTRP00000003826/1-998 ---------- -----LEAGS DEDRKLNHX- ---------- ---------- ENSP00000315713/1-1049 SPTPSAASSS ASNSELEAGS EEDRKLNLS- ---------- ---------- ENSBTAP00000025062/1-1010 ---------- ---MFSLFHH AFGRVFVLS- ---------- ---------- bmy_08269T0/1-1015 ---------- ---------- MDAKELFVSR ---------- ---------- BACU008374/1-1141 VNGPLSSGCA GTRAFLNPNI REGREFHQSH LPSGWERHLE GDSAFQEGSI 101 150 ENSTTRP00000003826/1-998 ---------- ---------- ---------- ---------- ---------- ENSP00000315713/1-1049 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025062/1-1010 ---------- ---------- ---------- ---------- ---------- bmy_08269T0/1-1015 ---------- ---------- ---------- ---------- ---------- BACU008374/1-1141 QPLLQTFILL WRAGKAGAGG TSVRDVTTAV PDLFCCTDVC ASSQPAPCFC 151 200 ENSTTRP00000003826/1-998 ---------X XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXDLPQHL ENSP00000315713/1-1049 ---------L SESFFMVKGA ALFLQQGSSP QGQRSLQHPH KHAGDLPQHL ENSBTAP00000025062/1-1010 ---------L SESFFMVKGA ALFLQQGSSP QAQRSLQHPH RHAGDLPQHL bmy_08269T0/1-1015 --------GL SESFFMVKGA ALFLQQGSSP QGQRSLQHPH KHAGDLPQHL BACU008374/1-1141 PSEVSSPSHL SESFFMVKGA ALFLQQGSSP QGQRSLQHPH KHAGDLPQHL 201 250 ENSTTRP00000003826/1-998 QVMINLLRCE DRIKLAVRLE SAWAERARYM VVVDSSGRQD TEESILLGVD ENSP00000315713/1-1049 QVMINLLRCE DRIKLAVRLE SAWADRVRYM VVVYSSGRQD TEENILLGVD ENSBTAP00000025062/1-1010 QVMINLLRCE DRIKLAVRLE SAWAERVRYM VVVDSSGRQD TEESILLGVD bmy_08269T0/1-1015 QVMINLLRCE DRIKLAVRLE SAWAERARYM VVVDSSGRQD TEESILLGVD BACU008374/1-1141 QVMINLLRCE DRIKLAVRLE SAWAERARYM VVVDSSGRQD TEESILLGVD 251 300 ENSTTRP00000003826/1-998 FSSKESKSCT IGMVLRLWSD -KIHLDGDGG FSVSTAGRMH IFKPVSVQAM ENSP00000315713/1-1049 FSSKESKSCT IGMVLRLWSD TKIHLDGDGG FSVSTAGRMH IFKPVSVQAM ENSBTAP00000025062/1-1010 FSSKESKSCT IGMVLRLWSD TKIHLDGDGG FSVSTAGRMH VFKPVSVQAM bmy_08269T0/1-1015 FSSKESKSCT IGMVLRLWSD TKIHLDGDGG FSVSTAGRMH IFKPVSVQAM BACU008374/1-1141 FSSKESKSCT IGMVLRLWSD TKIHLDGDGG FSVSTAGRMH IFKPVSVQAM 301 350 ENSTTRP00000003826/1-998 WSALQVLHKA CEVARRHNYF PGGVALLWAS YYESCIGSEQ SCINEWNAMQ ENSP00000315713/1-1049 WSALQVLHKA CEVARRHNYF PGGVALIWAT YYESCISSEQ SCINEWNAMQ ENSBTAP00000025062/1-1010 WSALQVLHKA CEVARRHNYF PGGVALLWAS YYESCIGSEQ SCINEWNAMQ bmy_08269T0/1-1015 WSALQVLHKA CEVARRHNYF PGGVALLWAS YYESCIGSEQ SCINEWNAMQ BACU008374/1-1141 WSALQVLHKA CEVARRHNYF PGGVALLWAS YYESCIGSEQ SCINEWNAMQ 351 400 ENSTTRP00000003826/1-998 DLESTRPDSP ALFADKPTEG ERTERLIKAK LRSIMMSQDL ENVTSKEIRN ENSP00000315713/1-1049 DLESTRPDSP ALFVDKPTEG ERTERLIKAK LRSIMMSQDL ENVTSKEIRN ENSBTAP00000025062/1-1010 DLESTRPDSP ALFADKPTEG ERTERLIKAK LRSIMMSQDL ENVTSKEIRN bmy_08269T0/1-1015 DLESTRPDSP ALFADKPTEG ERTERLIKAK LRSIMMSQDL ENVTSKEIRN BACU008374/1-1141 DLESTRPDSP ALFADKPTEG ERTERLIKAK LRSIMMSQDL ENVTSKEIRN 401 450 ENSTTRP00000003826/1-998 ELEKQMNCNL KEFKEFIDNE MLLILGQMDK PSLIFDHLYL GSEWNASNLE ENSP00000315713/1-1049 ELEKQMNCNL KELKEFIDNE MLLILGQMDK PSLIFDHLYL GSEWNASNLE ENSBTAP00000025062/1-1010 ELEKQMNCNL KEFKEFIDNE MLLILGQMDK PSLIFDHLYL GSEWNASNLE bmy_08269T0/1-1015 ELEKQMNCNL KEFKEFIDNE MLLILGQMDK PSLIFDHLYL GSEWNASNLE BACU008374/1-1141 ELEKQMNCNL KEFKEFIDNE MLLILGQMDK PSLIFDHLYL GSEWNASNLE 451 500 ENSTTRP00000003826/1-998 ELQGSGVDYI LNVTREIDNF FPGLFAYHNI RVYDEETTDL LAHWNEAYHF ENSP00000315713/1-1049 ELQGSGVDYI LNVTREIDNF FPGLFAYHNI RVYDEETTDL LAHWNEAYHF ENSBTAP00000025062/1-1010 ELQGSGVDYI LNVTREIDNF FPGLFAYHNI RVYDEETTDL LAHWNEAYHF bmy_08269T0/1-1015 ELQGSGVDYI LNVTREIDNF FPGLFAYHNI RVYDEETTDL LAHWNEAYHF BACU008374/1-1141 ELQGSGVDYI LNVTREIDNF FPGLFAYHNI RVYDEETTDL LAHWNEAYHF 501 550 ENSTTRP00000003826/1-998 INKAKKNHSK CLVHCKMGVS RSASTVIAYA MKEFGWPLEK AYNYVKQKRS ENSP00000315713/1-1049 INKAKRNHSK CLVHCKMGVS RSASTVIAYA MKEFGWPLEK AYNYVKQKRS ENSBTAP00000025062/1-1010 INKAKRNHSK CLVHCKMGVS RSASTVIAYA MKEFGWTLEK AYNYVKQKRS bmy_08269T0/1-1015 INKAKRNHSK CLVHCKMGVS RSASTVIAYA MKEFGWPLEK AYNYVKQKRS BACU008374/1-1141 INKAKRNHSK CLVHCKMGVS RSASTVIAYA MKEFGWPLEK AYNYVKQKRS 551 600 ENSTTRP00000003826/1-998 ITRPNAGFMR QLSEYEGILD ASKQRHNKLW R--------Q QPVDDPAGPG ENSP00000315713/1-1049 ITRPNAGFMR QLSEYEGILD ASKQRHNKLW RQQT-DSSLQ QPVDDPAGPG ENSBTAP00000025062/1-1010 ITRPNAGFMR QLSEYEGILD ASKQRHNKLW RQQTDDSCLQ QPVDDPVGPG bmy_08269T0/1-1015 ITRPNAGFMR QLSEYEGILD ASKQRHNKLW R--------Q QPVDDPAGPG BACU008374/1-1141 ITRPNAGFMR QLSEYEGILD ASKQRHNKLW R--------Q QPVDDPAGPG 601 650 ENSTTRP00000003826/1-998 DFLPETLDGS PEAQPPCLDA AAQ----PGL G----PALPC CLRRLSDPLL ENSP00000315713/1-1049 DFLPETPDGT PESQLPFLDD AAQ----PGL G----PPLPC CFRRLSDPLL ENSBTAP00000025062/1-1010 DFQPETLDST PEAPPPCLDA TAPLPEFPGS GALGGAALPC CFRRLSDPLL bmy_08269T0/1-1015 DFLPETLDGT PEAQPPCLDA AAQ-PAFPGS GAPGVPALPC CLRRLSDPLL BACU008374/1-1141 DFLPETLDGT PEAQPPCLDA AAQ-PAFPGS GAPGGPALPC CLRRLSDPLL 651 700 ENSTTRP00000003826/1-998 HCPRDETGGW VPLEDLERDA LLEEAAQPAE ASKPAGQP-Q GPVLCEKEVK ENSP00000315713/1-1049 PSPEDETGSL VHLEDPEREA LLEEAAPPAE VHRPARQPQQ GSGLCEKDVK ENSBTAP00000025062/1-1010 RAPGDETGGP VHLEDLERDA LLEEAAQLAE VSQPARHPPE GPGLCEREVT bmy_08269T0/1-1015 HCPRDETGGW VHLEDLERDA LLEEAAQPAE ASKPAAHPPE GPGLCEKEVR BACU008374/1-1141 HCPRDETGGW VHLEDVERDA LLEEAAQPAE PSEPAAHPPE GPGLCEKEVR 701 750 ENSTTRP00000003826/1-998 KKPEFGSPHA RGGASPHVEE MER-DAPGA- KWGQPVTELD --LLG--NL- ENSP00000315713/1-1049 KKLEFGSPKG RSGSLLQVEE TEREEGLGAG RWGQLPTQLD QNLLNSENL- ENSBTAP00000025062/1-1010 KKPEL----- ----EPQAEE MEREEALGAR RWRQPAAQLD -NLLNRENLN bmy_08269T0/1-1015 KKLEFGSPQA RGGSSPQVEE MEREEAPGAG KWGQPVTQID -NLLNWENLN BACU008374/1-1141 KKLEFGSPQA RGGSSPQVEE MEREEALGAG KWGQPVTQLD -NLLNWENLN 751 800 ENSTTRP00000003826/1-998 NXXXXXXXXX XXXHDAIFGI LNKVKPSYKS CADCMYPAVS GIPEAFGERC ENSP00000315713/1-1049 NNNSKRSCPN GMEDDAIFGI LNKVKPSYKS CADCMYPTAS GAPEASRERC ENSBTAP00000025062/1-1010 NNNSKRSCPD DLEHDAIFGI LNKVKPSYKS CADCMYPAAG GTPEAFGERC bmy_08269T0/1-1015 NNNSKRSCPD DFEHDAIFGI LNKVKPSYKS CADCMYPAAS GIPEAFGERC BACU008374/1-1141 NNNSKRSCPD DFEHDAIFGI LNKVKPSYKS CADCMYPAAS GIPEAFGERC 801 850 ENSTTRP00000003826/1-998 KNPGAPAICT QPTFLPHLTS SPMAHVASRS RASEKLSSGP TETPPCLPPA ENSP00000315713/1-1049 EDPNAPAICT QPAFLPHITS SPVAHLASRS RVPEKPASGP TEPPPFLPPA ENSBTAP00000025062/1-1010 KNPGAAAICT QPTFLPQLTS SP---VAGRS RALEKLASGP TNTALFLPPT bmy_08269T0/1-1015 KNPSAPAICT QPTFLPHLTS SPMAHVASRS RASEKLSSGP TETPPFLPPA BACU008374/1-1141 KNPSAPAICT QPTFLPHLTS SPMAHVASRS RASEKLSSGP TETPPFLPPA 851 900 ENSTTRP00000003826/1-998 GSRRPDISSP GAGAAPELPA SLLEP--SRE THKVLPKSLL LKNSHCVKNA ENSP00000315713/1-1049 GSRRADTSGP GAGAALEPPA SLLEP--SRE TPKVLPKSLL LKNSHCDKNP ENSBTAP00000025062/1-1010 GSRRPDTGGP GAGAAPEPPA SLPEP--SRE THKALPKSLL VKNSHCDKNP bmy_08269T0/1-1015 GSRRPDISGP GAGAAPELPA SLLDSLESRE THKVLPKSLL LKNSHCDKNA BACU008374/1-1141 GSRRPDISGP GAGAAPELPA SLLEP--SRE THKVLPKSLL LKNSHCDKNA 901 950 ENSTTRP00000003826/1-998 PNMEVA-KDD SPPKKDPKPA KDLRLLFSKE AEKPTANSYL MQHQESIIQL ENSP00000315713/1-1049 PSTEVVIKEE SSPKKDMKPA KDLRLLFSNE SEKPTTNSYL MQHQESIIQL ENSBTAP00000025062/1-1010 PGSEAA-KED LSPKKDPKPA KDLRLLFSKE AEKPTSNSYL MQHQESIIQL bmy_08269T0/1-1015 PNLEVA-KDD SPPKKDPKPA KDLRLLFSKE AEKPTANSYL MQHQESIIQL BACU008374/1-1141 PNMEVA-KDD SPPKKDPKPA KDLRLLFSKE AEKPTANSYL MQHQESIIQL 951 1000 ENSTTRP00000003826/1-998 QKAGLVRKHT KELERLKGTP ADLAAPCKDG PASRLEASIP EESQDPA--- ENSP00000315713/1-1049 QKAGLVRKHT KELERLKSVP ADPAPPSRDG PASRLEASIP EESQDPAALH ENSBTAP00000025062/1-1010 QKAGLVRKHT KELERLKGTP AEPGALCRDG P-----AAIP EENQDLP--- bmy_08269T0/1-1015 QKAGLVRKHT KELERLKGTP ADPAAPCKDG PASRLEASIP EENQDPA--- BACU008374/1-1141 QKAGLVRKHT KELERLKGTP ADPAAPCKDG PASRLEASIP EENQDPA--- 1001 1050 ENSTTRP00000003826/1-998 ------LPGQ AQGDEKPEAG PPPSEGAPLK -PPLFLCRP- HTSHFSKDFL ENSP00000315713/1-1049 ELGPLVMPSQ AGSDEKSEAA PASLEGGSLK SPPPFFYRLD HTSSFSKDFL ENSBTAP00000025062/1-1010 ------LPGQ APGPEKPEPG PSLLEGAPLK SPPPFLCRPD HASHFSRDFL bmy_08269T0/1-1015 ------LPGQ AQGDEKPEAG PPPSEGAPLK SPPLFLCRPD HTSHFSKDFL BACU008374/1-1141 ------LPGQ AQGDEKPEAG PAP------- ---------- ---HFSKDFL 1051 1100 ENSTTRP00000003826/1-998 KTICY-PTSS SXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000315713/1-1049 KTICYTPTSS SMSSNLTRSS SSDSIHSVRG KPGLVKQRTQ EIETRLRLAG ENSBTAP00000025062/1-1010 KTICYTPTSS SMSSNLTRSS SSDSIHSVRG KPGLVKQRTQ EIETRLRLAG bmy_08269T0/1-1015 KTICYTPTSS SMSSNLTRSS SSDSIHSVRG KPGLVKQRTQ EIETRLRLAG BACU008374/1-1141 KTICYTPTSS SMSSNLTRSS SSDSIHSVRG KPGLVKQRTQ EIETRLRLAG 1101 1150 ENSTTRP00000003826/1-998 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX TRLSESSFLH ENSP00000315713/1-1049 LTVSSPLKRS HSLAKLGSLT FSTEDLSSEA DPSTVADSQD TTLSESSFLH ENSBTAP00000025062/1-1010 LTVSSPLKRS HSLAKLGSLN LSTEDLSSEA DVSSAADSQD ARLSESSLLH bmy_08269T0/1-1015 LTVSSPLKRS HSLAKLGSLN LSTEDLSSEA DVSTVADSQD ARVSESSFLH BACU008374/1-1141 LTVSSPLKRS HSLAKLGSLN LSTEDLSSEA DVSTVADSQD ARLSESSFLH 1151 1200 ENSTTRP00000003826/1-998 EPPVAPSDPT ATSKPSGKSA PENLKSPSWM SKS ENSP00000315713/1-1049 EPQGTPRDPA ATSKPSGKPA PENLKSPSWM SKS ENSBTAP00000025062/1-1010 EPPPAARSPA ATSKPSGKSA PENLKSPPWP GKS bmy_08269T0/1-1015 EPPVAPRNPA ATSKPSGKSA PENLKSPSWM SKS BACU008374/1-1141 EPPVAPRNPA ATSKPSGKSA PENLKSPSWM SKS