KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:24:50 2014 Check: 00 .. Name: ENSTTRP00000004515/1-1185 Len: 1240 Check: 8765 Weight: 1.00 Name: ENSP00000349076/1-1190 Len: 1240 Check: 1654 Weight: 1.00 Name: ENSBTAP00000025063/1-1184 Len: 1240 Check: 6903 Weight: 1.00 Name: BACU003068/1-1094 Len: 1240 Check: 5882 Weight: 1.00 Name: bmy_11478T0/1-1179 Len: 1240 Check: 3758 Weight: 1.00 // 1 50 ENSTTRP00000004515/1-1185 MKTRQNKDSM SMRSGRKKEA PGPREELRSR GRASPGGVST SSSDGKAEKS ENSP00000349076/1-1190 MKTRQNKDSM SMRSGRKKEA PGPREELRSR GRASPGGVST SSSDGKAEKS ENSBTAP00000025063/1-1184 MKTRQNKDSM SMRSGRKKEA PGPREELRPR GRASPGGVST SSSDGKAEKS BACU003068/1-1094 MKTRQNKDSM SMRSGRKKEA PGPREELRSR GRASPGGVST SSSDGKAEKS bmy_11478T0/1-1179 MKTRQNKDSM SMRSGRKKEA PGPREELRSR GRASPGGVST SSSDGKAEKS 51 100 ENSTTRP00000004515/1-1185 RQTAKKARVE EASTPKVSKQ GRSEEISESE SEETNAPKKT KTE------- ENSP00000349076/1-1190 RQTAKKARVE EASTPKVNKQ GRSEEISESE SEETNAPKKT KTE------- ENSBTAP00000025063/1-1184 RQTAKKARVE EASTPKVSKQ GRSEEISESE SEETNAPKKT KTE------- BACU003068/1-1094 RQTAKKARVE EASTPKVSKQ GRSEEISESE SEETNAPKKT KTEGGGLEQE bmy_11478T0/1-1179 RQTAKKARVE EASTPKVSKQ GRSEEISESE SEETNAPKKT KTE------- 101 150 ENSTTRP00000004515/1-1185 ---------- ---------- ---------- ---------- -QELPRPQSP ENSP00000349076/1-1190 ---------- ---------- ---------- ---------- -QELPRPQSP ENSBTAP00000025063/1-1184 ---------- ---------- ---------- ---------- -QELPRPQSP BACU003068/1-1094 YSSHRGTVVR CERDVILCEG GPKSRSKEGK GKGKMALPLL QQERPRPQSP bmy_11478T0/1-1179 ---------- ---------- ---------- ---------- -QELPRPQSP 151 200 ENSTTRP00000004515/1-1185 SDLDSLDGRS LNDDGSIDPR DIDQDNRSTS PSIYSPGSVE NDSDSSSGLS ENSP00000349076/1-1190 SDLDSLDGRS LNDDGSSDPR DIDQDNRSTS PSIYSPGSVE NDSDSSSGLS ENSBTAP00000025063/1-1184 SDLDSLDGRS LNDDGSSDPR DIDQDNRSTS PSIYSPGSVE NDSDSSSGLS BACU003068/1-1094 SDLDSLDGRS LNDDGSSDPR DIDQDNRSTS PSIYSPGSVE NDSDSSSGLS bmy_11478T0/1-1179 SDLDSLDGRS LNDDGSSDPR DIDQDNRSTS PSIYSPGSVE NDSDSSSGLS 201 250 ENSTTRP00000004515/1-1185 QGPARPYHPP PLFPPSPPPP ESTPRQPEPG FESHPSGTPT GYHAPMEPPT ENSP00000349076/1-1190 QGPARPYHPP PLFPPSPQPP DSTPRQPEAS FEPHPSVTPT GYHAPMEPPT ENSBTAP00000025063/1-1184 QGPARPYHPP PLFPPSPPPP DSTPRQPEPG FEPHPSVTPT GYHAPMEPPT BACU003068/1-1094 QGPARPYHPP PPFPPSPPPP ---PRQPEPG FESHPAGTPT GYHAPMEPPT bmy_11478T0/1-1179 QGPARPYHPP PLFPPSPPPP DSTPRQPEPG FESHPAGTPT GYHAPMEPPT 251 300 ENSTTRP00000004515/1-1185 SRMFQAPPGA PPPHPQLYPG GAGGGVLSGP PVGPKGGGAA ASVGAPSGGK ENSP00000349076/1-1190 SRMFQAPPGA PPPHPQLYPG GT-GGVLSGP PMGPKGGGAA SSVGGPNGGK ENSBTAP00000025063/1-1184 SRMFQAPPGA PPPHPQLYPG GSGGGVLSGP PLGPKGSGAA SSVGAPSGGK BACU003068/1-1094 SRMFQAPPGA PPPHPQLYPG GAGGGVLSGP PVGPKGGGAA ASVGALSGGK bmy_11478T0/1-1179 SRMFQAPPGA PPPHPQLYPG GAGGGVLSGP PVGPKGGGAA ASVGAPSGGK 301 350 ENSTTRP00000004515/1-1185 QHPQPPTPIS ISGSGAGGAP PTKPPNTPAG GGNLPSAPPP ATFPHVTPNL ENSP00000349076/1-1190 QHPPPTTPIS VSSSGASGAP PTKPPTTPVG GGNLPSAPPP ANFPHVTPNL ENSBTAP00000025063/1-1184 QHPPPTTPIS ISSSGAGGAP PTKPPNTPVG GGSLPSAPPP ASFPHVTPNL BACU003068/1-1094 QHPQPPNPIS ISGSGAGGAP PTKPPNTPA- GGNLPSAPPP ATFPHVTPNL bmy_11478T0/1-1179 QHPQPPTPIS ISGSGAGGAP PTKPPNTPAG GGNLPSAPPP ATFPHVTPNL 351 400 ENSTTRP00000004515/1-1185 PPPPALRPLN NASASPPGLG AQPLAGHLPS PHAMGQGMGG LPPGPKKGPT ENSP00000349076/1-1190 PPPPALRPLN NASASPPGLG AQPLPGHLPS PHAMGQGMGG LPPGPEKGPT ENSBTAP00000025063/1-1184 PPPPALRPLN NASASPPGLG AQPLPGHLPS PHAMGQSMGG LPPGPEKGPT BACU003068/1-1094 PPPPALRPLN NASASPPGLG AQPLAGHLPS PHAMGQGMGG LPPGPEKGPT bmy_11478T0/1-1179 PPPPALRPLN NASASPPGLG AQPLAGHLPS PHAMGQGMGG LPPGPEKGPT 401 450 ENSTTRP00000004515/1-1185 LAPSPHPLPF ASTSSAPAPP MRYPYSSSIT SSAAASSSSS SASASASQYP ENSP00000349076/1-1190 LAPSPHSLPP AS-SSAPAPP MRFPYSSSSS SSAAASSSSS SSSSSASPFP ENSBTAP00000025063/1-1184 LAPSPHPLPP AS-SSAPAPT MRYPYSSSTS SSAAAASSNS SASASASQYP BACU003068/1-1094 LAPSPHPLPP PSTSSAPAPP MRYPYSSSSS SSAAASSSSS --SASASQYP bmy_11478T0/1-1179 LAPSPHPLPP ASTSSAPAPP MRYPYSSSSS SSAAASSSSS SASASASQYP 451 500 ENSTTRP00000004515/1-1185 ASQALPSYPH SFLPPTSLSV SNQPPKYTQP SLLS-AVWSQ GSPPPPSYGR ENSP00000349076/1-1190 ASQALPSYPH SFPPPTSLSV SNQPPKYTQP SLPSQAVWSQ GPPPPPPYGR ENSBTAP00000025063/1-1184 ASQALPSYPH SFPPPTSLSV SNQPPKYTQP SLPSQAVWSQ GPPPPPPYGR BACU003068/1-1094 ASQALPSYPH SFPPPTSLSV SNQPPKYTQP SLPSQAVWSQ GPPPPPPYGR bmy_11478T0/1-1179 ASQALPSYPH SFPPPTSLSV SNQPPKYTQP SLPSQAVWSQ GPPPPPPYGR 501 550 ENSTTRP00000004515/1-1185 FLANSNAYPG PLPPSVGGQS AAHSPVPTHH XXXXXXXXXX XXXXXXXXXX ENSP00000349076/1-1190 LLANSNAHPG PFPPSTGAQS TAHPPVSTHH HHHQQQQQQQ QQQQQQQQQQ ENSBTAP00000025063/1-1184 LLANSSAHPG PFPPSAGGQS TAHPSAPTHH HHH------Q QQQQQQQQPP BACU003068/1-1094 LLANSNAHPG PLPPSAGGQS TAHPPVPTHH HHH------Q QQQQQQ---- bmy_11478T0/1-1179 LLANSNAHPG PLPPSAGGQS TAHPPVPTHH HHH------Q QQQQQQ---- 551 600 ENSTTRP00000004515/1-1185 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000349076/1-1190 QQHHGNSGPP PPGAFPHPLE GGSSHHAHPY AMSPSLGSLR PYPPGPAHLP ENSBTAP00000025063/1-1184 PPHHGGSGPP PPGAYPHPLE SGGSHHAHPY AMSPSLGSLR PYPPGPAHLP BACU003068/1-1094 --HHGGSAPP PPGAYPHPLE SGSAHHAHPY AMSPSLGSLR PYPPGPAHLP bmy_11478T0/1-1179 --HHGGSGPP PPGAYPHPLE SGSSHHAHPY AMSPSLGSLR PYPPGPAHLP 601 650 ENSTTRP00000004515/1-1185 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000349076/1-1190 PPHSQVSYSQ AGPNGPPVSS SSNSSSSTSQ GSYPCSHPSP SQGPQGAPYP ENSBTAP00000025063/1-1184 PPHSQVSYSQ AGPNGPPTSS SSNSSSS-SQ GSYPGSHPSP SQGPSGAPYP BACU003068/1-1094 PPHSQVAYSQ AGPSGPPASS SSNASSS-SQ GSYPCSHPSP SQGPQGAPYP bmy_11478T0/1-1179 PPHSQVAYSQ AGPSGPPASS SSNASSS-SQ GSYPCSHPSP SQGPQGAPYP 651 700 ENSTTRP00000004515/1-1185 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXPTYG KRASQ----G ENSP00000349076/1-1190 FPPVPTVTTS SATLSTVIAT VASSPAGYKT ASPPGPPPYG KRAPSPGAYK ENSBTAP00000025063/1-1184 FPPVPPVTTS SATLSTVIAT VASSPAGYKT ASPPGPPPYG KRAPSPGAYK BACU003068/1-1094 FPPVPPVTTS SSTLSTVIAT VASSPAGYKT ASPPGPPP-- ---------- bmy_11478T0/1-1179 FPPVPPVTTS SSTLSTVIAT VASSPAGYKT ASPPGPPPYG KRAPSPGAYK 701 750 ENSTTRP00000004515/1-1185 YTATRGYKPG SPPSFRTGTP PGYRGASPPA GPG-FKPGSP TVGTGPLPPA ENSP00000349076/1-1190 TATPPGYKPG SPPSFRTGTP PGYRGTSPPA GPGTFKPGSP TVGPGPLPPA ENSBTAP00000025063/1-1184 TATPPGYKPG SPPSFRTGTP PGYRGASPPA GPGTFKPGSP TVGPGPLPPA BACU003068/1-1094 ---------- ---------- ---------- ---------- ---------- bmy_11478T0/1-1179 TATPPGYKPG SPPSFRTGTP PGYRGASPPA GPGTFKPGSP TVGPGPLPPP 751 800 ENSTTRP00000004515/1-1185 GPSGLSSLPP PPAAPASGPP LSATQIKQEP AEEYETPESP APPARSPSPP ENSP00000349076/1-1190 GPSGLPSLPP PPAAPASGPP LSATQIKQEP AEEYETPESP VPPARSPSPP ENSBTAP00000025063/1-1184 GPSGLSSLPA PPAAPASGPP LSATQIKQEP AEEYETPESP VPPARSPSPP BACU003068/1-1094 ---------- ---------- ---------- ---------- ---------- bmy_11478T0/1-1179 GPSGLSSLPP PPAAPASGPP LSATQIKQEP AEEYETPESP APPARSPSPP 801 850 ENSTTRP00000004515/1-1185 PKVVDVPSHA SQSARFNKHL DRGFNSCARS DLYFVPLEGS KLAKKRADLV ENSP00000349076/1-1190 PKVVDVPSHA SQSARFNKHL DRGFNSCARS DLYFVPLEGS KLAKKRADLV ENSBTAP00000025063/1-1184 PKVVDVPSHA SQSARFNKHL DRGFNSCARS DLYFVPLEGS KLAKKRADLV BACU003068/1-1094 ---------- -----FNKHL DRGFNSCARS DLYFVPLEGS KLAKKRADLV bmy_11478T0/1-1179 PKVVDVPSHA SQSARFNKHL DRGFNSCARS DLYFVPLEGS KLAKKRADLV 851 900 ENSTTRP00000004515/1-1185 EKVRREAEQR AREEKERERE REREKERERE KERELERSVK LAQ-GRAPVE ENSP00000349076/1-1190 EKVRREAEQR AREEKERERE REREKERERE KERELERSVK LAQEGRAPVE ENSBTAP00000025063/1-1184 EKVRREAEQR AREEKERERE REREKERERE KERELERSVK LAQEGRAPVE BACU003068/1-1094 EKVRREAEQR AREEKERERE REREKERERE KERELERSVK LAQEGRAPVE bmy_11478T0/1-1179 EKVRREAEQR AREEKERERE REREKERERE KERELERSVK LAQEGRAPVE 901 950 ENSTTRP00000004515/1-1185 CPPLGPVPHR PPFEPGSAVA TVPPYLGPDT PALRTLSEYA RPHVMSPGNR ENSP00000349076/1-1190 CPSLGPVPHR PPFEPGSAVA TVPPYLGPDT PALRTLSEYA RPHVMSPGNR ENSBTAP00000025063/1-1184 CPSLGPVPHR PPFEPGSAVA TVPPYLGPDT PALRTLSEYA RPHVMSPGNR BACU003068/1-1094 CPSLGPVPHR PPFEPGSAVA TVPPYLGPDT PALRTLSEYA RPHVMSPGNR bmy_11478T0/1-1179 CPSLGPVPHR PPFEPGSAVA TVPPYLGPDT PALRTLSEYA RPHVMSPGNR 951 1000 ENSTTRP00000004515/1-1185 NHPFYVPLGA VDPGLLGYNV PALYSSDPAA REREREARER DLRDRLKPGF ENSP00000349076/1-1190 NHPFYVPLGA VDPGLLGYNV PALYSSDPAA REREREARER DLRDRLKPGF ENSBTAP00000025063/1-1184 NHPFYVPLGA VDPGLLGYNV PALYSSDPAA REREREARER DLRDRLKPGF BACU003068/1-1094 NHPFYVPLGA VDPGLLGYNV PALYSSDPAA REREREARER DLRDRLKPGF bmy_11478T0/1-1179 NHPFYVPLGA VDPGLLGYNV PALYSSDPAA REREREARER DLRDRLKPGF 1001 1050 ENSTTRP00000004515/1-1185 EVKPSELEPL HGVPGPGLDP FPRHGGLALQ PGPPGLHPFP FHPSLGPLER ENSP00000349076/1-1190 EVKPSELEPL HGVPGPGLDP FPRHGGLALQ PGPPGLHPFP FHPSLGPLER ENSBTAP00000025063/1-1184 EVKPSELEPL HGVPGPGLDP FPRHGGLALQ PGPPGLHPFP FHPSLGPLER BACU003068/1-1094 EVKPSELEPL HGVPGPGLDP FPRHGGLALQ PGPPGLHPFP FHPSLGPLER bmy_11478T0/1-1179 EVKPSELEPL HGVPGPGLDP FPRHGGLALQ PGPPGLHPFP FHPSLGPLER 1051 1100 ENSTTRP00000004515/1-1185 ERLALAAGPA LRPDMSYAER LAAERQHAER VAALGNDPLA RLQMLNVTPH ENSP00000349076/1-1190 ERLALAAGPA LRPDMSYAER LAAERQHAER VAALGNDPLA RLQMLNVTPH ENSBTAP00000025063/1-1184 ERLALAAGPA LRPDMSYAER LAAERQHAER VAALGNDPLA RLQMLNVTPH BACU003068/1-1094 ERLALAAGPA LRPDMSYAER LAAERQHAER VAALGNDPLA RLQMLNVTPH bmy_11478T0/1-1179 ERLALAAGPA LRPDMSYAER LAAERQHAER VAALGNDPLA RLQMLNVTPH 1101 1150 ENSTTRP00000004515/1-1185 HHQHSHIHSH LHLHQQDAIH AXXASVHPLI DPLASGSHLT RIPYPAGTLP ENSP00000349076/1-1190 HHQHSHIHSH LHLHQQDAIH AASASVHPLI DPLASGSHLT RIPYPAGTLP ENSBTAP00000025063/1-1184 HHQHSHIHSH LHLHQQDAIH AASASVHPLI DPLASGSHLT RIPYPAGTLP BACU003068/1-1094 HHQHSHIHSH LHLHQQDAIH AASASVHPLI DPLASGSHLT RIPYPAGTLP bmy_11478T0/1-1179 HHQHSHIHSH LHLHQQDAIH AASASVHPLI DPLASGSHLT RIPYPAGTLP 1151 1200 ENSTTRP00000004515/1-1185 NPLLPHPLHE NEVLRHQLFA APYRDLPASL SAPMSAAHQL QAMHAQSAEL ENSP00000349076/1-1190 NPLLPHPLHE NEVLRHQLFA APYRDLPASL SAPMSAAHQL QAMHAQSAEL ENSBTAP00000025063/1-1184 NPLLPHPLHE NEVLRHQLFA APYRDLPASL SAPMSAAHQL QAMHAQSAEL BACU003068/1-1094 NPLLPHPLHE NEVLRHQLFA APYRDLPASL SAPMSAAHQL QAMHAQSAEL bmy_11478T0/1-1179 NPLLPHPLHE NEVLRHQLFA APYRDLPASL SAPMSAAHQL QAMHAQSAEL 1201 1250 ENSTTRP00000004515/1-1185 QRLALEQQQW LHAHHPLHSV PLPAQEDYYS HLKKESDKPL ENSP00000349076/1-1190 QRLALEQQQW LHAHHPLHSV PLPAQEDYYS HLKKESDKPL ENSBTAP00000025063/1-1184 QRLALEQQQW LHAHHPLHSV PLPAQEDYYS HLKKESDKPL BACU003068/1-1094 QRLALEQQQW LHAHHPLHSV PLPAQEDYYS HLKKESDKPL bmy_11478T0/1-1179 QRLALEQQQW LHAHHPLHGV PLPAQEDYYS HLKKESDKPL