KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:24:51 2014 Check: 00 .. Name: ENSP00000268595/1-248 Len: 262 Check: 4271 Weight: 1.00 Name: ENSTTRP00000010489/1-215 Len: 262 Check: 2387 Weight: 1.00 Name: bmy_05303T0/1-142 Len: 262 Check: 9790 Weight: 1.00 Name: ENSBTAP00000025066/1-233 Len: 262 Check: 7789 Weight: 1.00 // 1 50 ENSP00000268595/1-248 MAPKAAKGAK PEPAPAPPPP GAKPEEDKKD GKE--PSDKP QKAVQDHKEP ENSTTRP00000010489/1-215 MADKAKRA-N PG-----PPA ---------- ---------- ---------- bmy_05303T0/1-142 MADKGKKG-K AGAAAAPTPA PAPAAAAAAP GAAPLPGDKP E-------EK ENSBTAP00000025066/1-233 MADK--KG-K PGEAEAPPPQ ---------- -----KGEK- --------DP 51 100 ENSP00000268595/1-248 SDKPQKAVQP KHEVGTRRG- CRRYRWELKD SNKEFWLLGH AEIKIRSLGC ENSTTRP00000010489/1-215 --KAATAAKA ATEVGRWKGW CRRYKLEVKN SNREFWLNGY AEVKLIILGC bmy_05303T0/1-142 TEKKKKSEQP KDEVGTRKG- CRRYMWEFKD SNREFWVMGY AEVKLISLGC ENSBTAP00000025066/1-233 EEPKKKSEQP KDEVGTRKG- CRRYKWEFKD SNKEFWSVGH AEVKLISLAC 101 150 ENSP00000268595/1-248 LIAAMILLSS LTVHPILRLI ITMEISFFSF FILLYSFAIH RYIPFILWPI ENSTTRP00000010489/1-215 LIGSLTMFKG TTVHPHVTLI ITMELSILIF FIIIYTFAIQ RYTFFILWPI bmy_05303T0/1-142 LIGSLIMFTG TTVHPFLTLI ITMELSIFIF FIIIYTFAIQ RYMSFILWPI ENSBTAP00000025066/1-233 LIGSLVMFTG STVHPLLTLI ITMEISIFIF FFIIYTFAIQ RYLPFILWPI 151 200 ENSP00000268595/1-248 SDLFNDLIAC AFLVGAVVFA VRSRRSMNLH YLLAVILIGA AGVFAFIDVC ENSTTRP00000010489/1-215 SDLLNDLSSS AFLVRAALSA VKTRQTMPMH YIYGVILIGV AALVALIDVC bmy_05303T0/1-142 S--------- ---------- ---------- ---------- ---------- ENSBTAP00000025066/1-233 SDLLNDLFCC GFLVGAAVFA LRSRQTVPTN YLAAVVFLCV AALFALVDVC 201 250 ENSP00000268595/1-248 LQRNHFRGKK AKKHMLVPP- -PGKEKGPQQ GKGPEPAKPP EPGKPPGPAK ENSTTRP00000010489/1-215 LQMTHFKGKK VKARVRILPR KDKKDKKPKE GEKPEPAVPA VPGHLPRAAK bmy_05303T0/1-142 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025066/1-233 LQKKHFKGKK IKRNVLVPP- PPKEPEKPVA EVKPVDAEKK KEAGKPKEAK 251 300 ENSP00000268595/1-248 ---------G KK ENSTTRP00000010489/1-215 ---------G KK bmy_05303T0/1-142 ---------- -- ENSBTAP00000025066/1-233 AKGAAGAKGG KK