KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:24:54 2014 Check: 00 .. Name: bmy_07851T0/1-850 Len: 850 Check: 3983 Weight: 1.00 Name: BACU015949/1-817 Len: 850 Check: 5080 Weight: 1.00 Name: ENSTTRP00000001667/1-499 Len: 850 Check: 7601 Weight: 1.00 Name: ENSP00000425634/1-509 Len: 850 Check: 2360 Weight: 1.00 Name: ENSBTAP00000025094/1-509 Len: 850 Check: 2027 Weight: 1.00 // 1 50 bmy_07851T0/1-850 MADRATLEDL VRLQGERVRA LKQQKAGAEQ IEEEVAKLLK LKAQLGPDEG BACU015949/1-817 MADRATLEDF VRLQGERVRA LKQQKAGAEQ IEEEVAKLLK LKAQLGPDEG ENSTTRP00000001667/1-499 MADRATLEDL VRLQGERVRA LKQQKASAEQ IEEEVAKLLK LKAQLGPDEG ENSP00000425634/1-509 MAERAALEEL VKLQGERVRG LKQQKASAEL IEEEVAKLLK LKAQLGPDES ENSBTAP00000025094/1-509 MADRAALEDL VRVQGERVRG LKQQKASAEQ IEEEVAKLLK LKAQLGPDEG 51 100 bmy_07851T0/1-850 KQKFVLKTPK GTRDYSPRQM AVREKVFDVI ISCFKRHGAE VIDTPVFELK BACU015949/1-817 KQKFVLKTPK GTRDYSPRQM AVREKVFDVI ISCFKRHGAE VIDTPVFELK ENSTTRP00000001667/1-499 KQKFVLKTPK STRDYSPRQM AVREKV-DVI ISCFKRHGAE VIDTPVFELK ENSP00000425634/1-509 KQKFVLKTPK GTRDYSPRQM AVREKVFDVI IRCFKRHGAE VIDTPVFELK ENSBTAP00000025094/1-509 KPKFVLKTPK GTRDYSPRQM AVREKVFDVI ISCFKRHGAE VIDTPVFELK 101 150 bmy_07851T0/1-850 ETLTGKYGED SKLIYDLKDQ GGELLSLRYD LTVPFARYLA MNKLTNIKRY BACU015949/1-817 ETLTGKYGED SKLIYDLKDQ GGELLSLRYD LTVPFARYLA MNKLTNIKRY ENSTTRP00000001667/1-499 ETLTGKYGED SKLIYDLKDQ GGELLSLRYD LTVPFARYLA MNKLTNIKRY ENSP00000425634/1-509 ETLMGKYGED SKLIYDLKDQ GGELLSLRYD LTVPFARYLA MNKLTNIKRY ENSBTAP00000025094/1-509 ETLTGKYGED SKLIYDLKDQ GGELLSLRYD LTVPFARYLA MNKLTNIKRY 151 200 bmy_07851T0/1-850 HIAKVYRRDN PAMTRGRYRE FYQCVSMEAG WDFDIAGQFD PMIPDAECLK BACU015949/1-817 HIAKVYRRDN PAMTRGRYRE FYQC------ -DFDIAGQFD PMIPDAECLK ENSTTRP00000001667/1-499 HIAKVYRRDN PAMTRGRYRE FYQC------ -DFDIAGQFD PMIPDAECLK ENSP00000425634/1-509 HIAKVYRRDN PAMTRGRYRE FYQC------ -DFDIAGNFD PMIPDAECLK ENSBTAP00000025094/1-509 HIAKVYRRDN PAMTRGRYRE FYQC------ -DFDIAGQFD PMLPDAECLK 201 250 bmy_07851T0/1-850 IMCEILSSLQ IGDFLVKVND RRILDGTFAV CGVPDSKFRT ICSSVDKLDK BACU015949/1-817 IMCEILSSLQ IGDFLVKVND RRILDGTFAV CGVPDSKFRT ICSSVDKLDK ENSTTRP00000001667/1-499 IMCEILSSL- IGDFLVKVDH ---LDTL--I CGVDS---RT ICSSVDKLDK ENSP00000425634/1-509 IMCEILSSLQ IGDFLVKVND RRILDGMFAI CGVSDSKFRT ICSSVDKLDK ENSBTAP00000025094/1-509 IMCEILSSLQ IGDFLVKVND RRILDGMFAI CGVPDSKFRT ICSSVDKLDK 251 300 bmy_07851T0/1-850 VSWEEVKSEM VGEKGLAPEV ADRIGDYVQQ HGGVSLVEQL LQDPKLSQNK BACU015949/1-817 VSWEEVKSEM VGEKGLAPEV ADRVGDYVQQ HGGVSLVEQL LQDPKLSQNK ENSTTRP00000001667/1-499 VSWEEVKSEM VGEKGLAPEV ADRIGDYVQQ HGGVSLVEQL LQDPKLSQNK ENSP00000425634/1-509 VSWEEVKNEM VGEKGLAPEV ADRIGDYVQQ HGGVSLVEQL LQDPKLSQNK ENSBTAP00000025094/1-509 VSWEEVKNEM VGEKGLAPEV ADRIGDYVQQ HGGVSLVEQL LQDPKLSQNK 301 350 bmy_07851T0/1-850 QALEGLGDLK LLFDYLTLFG IADKISFDLS LARGLDYYTG VIYEAVLLQP BACU015949/1-817 QALEGLGDLK LLFEYLTLFG IADKISFDLS LARGLDYYTG VIYEAVLLQP ENSTTRP00000001667/1-499 QALEGLGDLK LLFEYLTLFG IADKISFDLS LARGLDYYTG VIFEAVLLQP ENSP00000425634/1-509 QALEGLGDLK LLFEYLTLFG IDDKISFDLS LARGLDYYTG VIYEAVLLQT ENSBTAP00000025094/1-509 QALEGLGDLK LLFEYLTLFG IADKISFDLS LARGLDYYTG VIYEAVLLQP 351 400 bmy_07851T0/1-850 PAQAGEEPLG VGSVAAGGRY DGLVGMFDPK GRKVPCVGLS IGVERIFSTV BACU015949/1-817 PAQAGEEPLG VGSVAAGGRY DGLVGMFDPK GRKVPCVGLS IGVERIFSTV ENSTTRP00000001667/1-499 PAQAGEEPLG VGSVAAGGRY DGLVGMFDPK GRKVPCVGLS IGVERIFSIV ENSP00000425634/1-509 PAQAGEEPLG VGSVAAGGRY DGLVGMFDPK GRKVPCVGLS IGVERIFSIV ENSBTAP00000025094/1-509 PARAGEEPLG VGSVAAGGRY DGLVGMFDPK GRKVPCVGLS IGVERIFSIV 401 450 bmy_07851T0/1-850 EQRLEALEEK VRTTETQVLV ASAQKKLLEE RLKLISELWD AGIKAELLYK BACU015949/1-817 EQRLEALEEK VRTTETQVLV ASAQKKLLEE RLKLISELWD AGIKAELLYK ENSTTRP00000001667/1-499 EQRLEAVKEK VRTTETQVLV ASAQKKLLEE RLKLISELWD AGIKAELLYK ENSP00000425634/1-509 EQRLEALEEK IRTTETQVLV ASAQKKLLEE RLKLVSELWD AGIKAELLYK ENSBTAP00000025094/1-509 EQRLEALEEK VRTTETQVLV ASAQKKLLEE RLKLISELWD AGIKAELLYK 451 500 bmy_07851T0/1-850 KNPKLLNQLQ YCEEAGIPLV AIVGEQELKD GVIKLRSVAS REELWCERVN BACU015949/1-817 KNPKLLNQLQ YCEEAGIPLV AIVGEQELKD GVIKLRSVAS REELWCERVN ENSTTRP00000001667/1-499 KNPKLLNQLQ YCEEAGIPLV AIIGEQELKD GVIKLRSVAS REEV------ ENSP00000425634/1-509 KNPKLLNQLQ YCEEAGIPLV AIIGEQELKD GVIKLRSVTS REEV------ ENSBTAP00000025094/1-509 KNPKLLNQLQ YCEETGIPLV AIIGEQELKD GVIKLRSVAS REEV------ 501 550 bmy_07851T0/1-850 PENKAALEAW VRETGIRLVQ VNGQRKYGGP PPGWVGSPPP AGSEVFIGRL BACU015949/1-817 PENKAALEAW VRETGIRLVQ VNGQRKYGGP PPGWVGSPPP AGSEVLIGRL ENSTTRP00000001667/1-499 ---------- ---------- ---------- ---------- ---------- ENSP00000425634/1-509 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025094/1-509 ---------- ---------- ---------- ---------- ---------- 551 600 bmy_07851T0/1-850 PQDVYEHQLI PLFQRVGRLY EFRLMMTFSG LNRGFAYARY SSRRGAQAAI BACU015949/1-817 PQDVYEHQLI PLFQRVGRLY EFRLMMTFSG LNRGFAYARY SSRRGAQAAI ENSTTRP00000001667/1-499 --DVRREDLV EEIRR----- ---------- ---------- ---------- ENSP00000425634/1-509 --DVRREDLV EEIKR----- ---------- ---------- ---------- ENSBTAP00000025094/1-509 --DVRREDLV EEIKR----- ---------- ---------- ---------- 601 650 bmy_07851T0/1-850 ATLHNHPLRP SCPLLVCRST EKCELSVDGL PPGLSRRALL LALQPLGPGL BACU015949/1-817 ATLHNHPLRP SCPLLVCRST EKCELSVDGL PPGLSRRALL LALQPLSPGL ENSTTRP00000001667/1-499 --------KT SQPLCIC--- ---------- ---------- ---------- ENSP00000425634/1-509 --------RT GQPLCIC--- ---------- ---------- ---------- ENSBTAP00000025094/1-509 --------RT SQPLCIC--- ---------- ---------- ---------- 651 700 bmy_07851T0/1-850 QEALLLPSPG PAPAQIALLK FSSHRAAAMA KKALVEGQSR LCGEQVAVEW BACU015949/1-817 QEALLLPSPG PAPAQIALLK FSSHRAAAMA KKALVEGQSR LCGEQVAVEW ENSTTRP00000001667/1-499 ---------- ---------- ---------- ---------- ---------- ENSP00000425634/1-509 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025094/1-509 ---------- ---------- ---------- ---------- ---------- 701 750 bmy_07851T0/1-850 LKPDLKQRLR QQLTDPSLQC LQPEGSQVAL ARDKGLESQG ARAALQLLCQ BACU015949/1-817 LKPDLKQRLR QQLTDPPLQC LQPEGSQVAL ARDKGLEFQG ARAALQLLCQ ENSTTRP00000001667/1-499 ---------- ---------- ---------- ---------- ---------- ENSP00000425634/1-509 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025094/1-509 ---------- ---------- ---------- ---------- ---------- 751 800 bmy_07851T0/1-850 RMKLGSPLFL TKCLGTGSAG WHRFWYQVVI PGHPVPFSGL IWVVLAPSGQ BACU015949/1-817 RMKLGSPLFL TKCLGTGSAG WHRFWYQVVI PGHPVPFSGL IWVVLDPSGQ ENSTTRP00000001667/1-499 ---------- ---------- ---------- ---------- ---------- ENSP00000425634/1-509 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025094/1-509 ---------- ---------- ---------- ---------- ---------- 801 850 bmy_07851T0/1-850 DGHEVAKDAV SARLLEALSL GPASCGLLGL RQEVPWFSSD LILSPGSLNE BACU015949/1-817 DGHEVAKDAV SARLLESLSL GPAS------ ---------- ---------- ENSTTRP00000001667/1-499 ---------- ---------- ---------- ---------- ---------- ENSP00000425634/1-509 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025094/1-509 ---------- ---------- ---------- ---------- ----------