KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:00 2014 Check: 00 .. Name: ENSBTAP00000025104/1-1148 Len: 1163 Check: 4021 Weight: 1.00 Name: ENSP00000286835/1-1147 Len: 1163 Check: 6470 Weight: 1.00 Name: BACU010383/1-842 Len: 1163 Check: 4960 Weight: 1.00 Name: ENSTTRP00000010404/1-1121 Len: 1163 Check: 217 Weight: 1.00 Name: bmy_11578T0/1-1129 Len: 1163 Check: 7264 Weight: 1.00 // 1 50 ENSBTAP00000025104/1-1148 VSFLFLTNQE ILFSLMDMKP PISRAKMILI TKAAIKAIKL YKHVVQIVEK ENSP00000286835/1-1147 MDAVNAFNQE -LFSLMDMKP PISRAKMILI TKAAIKAIKL YKHVVQIVEK BACU010383/1-842 ---------- -----MDMKP PISRAKMILI TKAAIKAIKL YKHVVQIVEK ENSTTRP00000010404/1-1121 ---------- -LFSLMDMKP PISRAKMILI TKAAIKAIKL YKHVVQ-VEK bmy_11578T0/1-1129 ---------- -----MDMKP PISRAKMILI TKAAIKAIKL YKHVVQIVEK 51 100 ENSBTAP00000025104/1-1148 FIKKCKPEYK VPGLYVIDSI VRQSRHQFGT DKDVFGPRFS KNITATFQYL ENSP00000286835/1-1147 FIKKCKPEYK VPGLYVIDSI VRQSRHQFGT DKDVFGPRFS KNITATFQYL BACU010383/1-842 FIKKCKPEYK VPGLYVIDSI VRQSRHQFGT DKDVFGPRFS KNITATFQYL ENSTTRP00000010404/1-1121 FIKKCKPEYK VPGLYVIDSI VRQSRHQFGT DKDVFGPRFS KNITATFQYL bmy_11578T0/1-1129 FIKKCKPEYK VPGLYVIDSI VRQSRHQFGT DKDVFGPRFS KNITATFQYL 101 150 ENSBTAP00000025104/1-1148 YLCPSEDKSK IVRVLNLWQK NGVFKIEIIQ PLLDMAAGTS NAAPVTENVT ENSP00000286835/1-1147 YLCPSEDKSK IVRVLNLWQK NGVFKIEIIQ PLLDMAAGTS NAAPVAENVT BACU010383/1-842 YLCPSEDKSK IVRVLNLWQK NGVFKIEIIQ PLLDMAAGTS NAAPVTENVT ENSTTRP00000010404/1-1121 YLCPSEDKSK IVRVLNLWQK NGVFKIEIIQ PLLDMAAGTS NAAPVTENVT bmy_11578T0/1-1129 YLCPSEDKSK IVRVLNLWQK NGVFKIEIIQ PLLDMAAGTS NAAPVTENVT 151 200 ENSBTAP00000025104/1-1148 NNEGSPPPPV KVSSEPP-QA TTNSVPTVPQ LPSSDAFAAV AQLFQTTQGQ ENSP00000286835/1-1147 NNEGSPPPPV KVSSEPPTQA TPNSVPAVPQ LPSSDAFAAV AQLFQTTQGQ BACU010383/1-842 NNEGSPPPPV KVSSEPS-QA TTNSIPTVPQ LPSSDAFAAV AQLFQTTQGQ ENSTTRP00000010404/1-1121 NNEGSPPPPV KVSSEPS-QA TTNSIPTVPQ LPSSDAFAAV AQLFQTTQGQ bmy_11578T0/1-1129 NNEGSPPPPV KVSSEPS-QA TTNSIPTVPQ LPSSDAFAAV AQLFQTTQGQ 201 250 ENSBTAP00000025104/1-1148 QLQQILQTFQ QPPKPQSPAI DNAVMAQVQA ITAQLKTAPT QPPEQKAAFP ENSP00000286835/1-1147 QLQQILQTFQ QPPKPQSPAL DNAVMAQVQA ITAQLKTTPT QPSEQKAAFP BACU010383/1-842 QLQQILQTFQ QPPKPQSPAI DNAVMAQVQA ITAQLKTAPT QPPEQKAAFP ENSTTRP00000010404/1-1121 QLQQILQTFQ QPPKPQSPAI DNAVMAQVQA ITAQLKTAPT QPPEQKAAFP bmy_11578T0/1-1129 QLQQILQTFQ QPPKPQSPAI DNAVMAQVQA ITAQLKTAPT QPPEQKAAFP 251 300 ENSBTAP00000025104/1-1148 PPEQKTAFDK KLLDRFDYDD EPEAVEESKK EDAVAAS--- ----ATTTPA ENSP00000286835/1-1147 PPEQKTAFDK KLLDRFDYDD EPEAVEESKK EDTT------ ----AVTTTA BACU010383/1-842 QPEQKTAFDK KLLDRFDYDD EPEAVEEAKK EDAAAAAAAA AA--ATATTA ENSTTRP00000010404/1-1121 QPEQKTAFDK KLLDRFDYDD EPEAVEESKK EDAA------ ----AAATAA bmy_11578T0/1-1129 QPEQKTAFDK KLLDRFDYDD EPEAVEEAKK EDAAAAAAAA ATATAAATTA 301 350 ENSBTAP00000025104/1-1148 PAAVVPTTPA TATAPSVAAP TAS---PPQA PFGFPGDGMP QPTYAQHQNM ENSP00000286835/1-1147 PAAAVPP-AP TATVPAAAAP AAASPPPPQA PFGFPGDGMQ QPAYTQHQNM BACU010383/1-842 PAAAVAPSAP AAAVPSVAAT TAS---PPQA PFGFPGDGMQ QPAYTQHQNM ENSTTRP00000010404/1-1121 PAAAVAPPAS AAAVPSVAAT AAS---PPQA PFGFPGDGMQ QPAYTQHQNM bmy_11578T0/1-1129 PAAAVAPSAP AAAVPSVAAT AAS---PPQA PFGFPGDGMQ QPAYTQHQNM 351 400 ENSBTAP00000025104/1-1148 DQFPPRMMAV QQDPVHHQTN KVPLPPNGQM PGFGLLPTPP FPPMAQPVIP ENSP00000286835/1-1147 DQFQPRMMGI QQDPMHHQ-- -VPLPPNGQM PGFGLLPTPP FPPMAQPVIP BACU010383/1-842 DQFQPRMMAI QQDPVHHQ-- -VPLPPNGQM PGFGLLPTPP FPPMAQSVIP ENSTTRP00000010404/1-1121 DQFQPRMMAI QQDPVHHQ-- -VPLPPNGQM PGFGLLPTPP FPPMAQSVIP bmy_11578T0/1-1129 DQFQPRMMPI QQDPVHHQ-- -VPLPPNGQM PGFGLLPTPP FPPMAQSVIP 401 450 ENSBTAP00000025104/1-1148 PTPPVQQPFQ TSFQAQNEPL TQKAHQKEME VEQPCIQEPK RHISDHRKSR ENSP00000286835/1-1147 PTPPVQQPFQ ASFQAQNEPL TQKPHQQEME VEQPCIQEVK RHMSDNRKSR BACU010383/1-842 PTPPVQQPFQ TSFQAPGEPL TQKAHQ-EME VEQPCIQEVK RHMSDNRKSR ENSTTRP00000010404/1-1121 PTPPVQQPFQ TSFQAQSEPL TQKAHQ-EME VEQPCIQEVK RHMSDNRKSR bmy_11578T0/1-1129 PTPPVQQPFQ TSFQAQSEPL TQKAHQ-EME VEQPCIQEVK RHMSDNRKSR 451 500 ENSBTAP00000025104/1-1148 SRSASRSPKR RRSRSGSRSR RSRHRRSRSR SRDRRRHSPR SRSQERRDRE ENSP00000286835/1-1147 SRSASRSPKR RRSRSGSRSR RSRHRRSRSR SRDRRRHSPR SRSQERRDRE BACU010383/1-842 SRSASRSPKR RRSRSGSRTR RSRHRRSRSR SRDRRRHSPR SRSQERRDRE ENSTTRP00000010404/1-1121 SRSASRSPKR RRSRSGSRTR RSRHRRSRSR SRDRRRHSPR SRSQERRDRE bmy_11578T0/1-1129 SRSASRSPKR RRSRSGSRTR RSRHRRSRSR SRDRRRHSPR SRSQERRDRE 501 550 ENSBTAP00000025104/1-1148 KERERRQKGL PQIKAETASV CSTTLWVGQL DKRTTQQDVA SLLEEFGPIE ENSP00000286835/1-1147 KERERRQKGL PQVKPETASV CSTTLWVGQL DKRTTQQDVA SLLEEFGPIE BACU010383/1-842 KERERRQKGL PQIKPETASV CSTTLWVGQL DKRTTQQDVA SLLEEFGPIE ENSTTRP00000010404/1-1121 KERERRQKGL PQIKPETASV CSTTLWVGQL DKRTTQQDVA SLLEEFGPIE bmy_11578T0/1-1129 KERERRQKGL PQIKPETASV CSTTLWVGQL DKRTTQQDVA SLLEEFGPIE 551 600 ENSBTAP00000025104/1-1148 SINMIPPRGC AYIVMVHRQD AYRALQKLSR GNYKVNQKSI KIAWALNKGI ENSP00000286835/1-1147 SINMIPPRGC AYIVMVHRQD AYRALQKLSR GNYKVNQKSI KIAWALNKGI BACU010383/1-842 SINMIPPRGC AYIVMVHRQD AYRALQKLSR GNYKVNQKSI KIAWALNKGI ENSTTRP00000010404/1-1121 SINMIPPRGC AYIVMVHRQD ANRALQKLSR GNYKVNQKSI KIAWALNKGI bmy_11578T0/1-1129 SINMIPPRGC AYIVMVHRQD AYRALQKLSR GNYKVNQKSI KIAWALNKGI 601 650 ENSBTAP00000025104/1-1148 KADYKQYWDV ELGVTYIPWD KVKPEELESF CEGGMLDSDT LNPDWKGIPK ENSP00000286835/1-1147 KADYKQYWDV ELGVTYIPWD KVKPEELESF CEGGMLDSDT LNPDWKGIPK BACU010383/1-842 KADYKQYWDV ELGVTYIPWD KVKPEELESF CEGGMLDSDT LNPDWKGIPK ENSTTRP00000010404/1-1121 KADYKQYWDV ELGVTYIPWD KVKPEELESF CEGGMLDSDT LNPDWKGIPK bmy_11578T0/1-1129 KADYKQYWDV ELGVTYIPWD KVKPEELESF CEGGMLDSDT LNPDWKGIPK 651 700 ENSBTAP00000025104/1-1148 KHENEVAQNG GAETSHTEPV SPTPKPLPVP VPPIPVPAPI TVPPPQVPPH ENSP00000286835/1-1147 KPENEVAQNG GAETSHTEPV SPIPKPLPVP VPPIPVPAPI TVPPPQVPPH BACU010383/1-842 KHENEVAQNG GAETSHTEPV SPIPKPLPVP VPPIPVPAPI TVPPPQVPPH ENSTTRP00000010404/1-1121 KHENEVAQNG GAETSHTEPV SPIPKPLPVP VPPIPVPAPI TVPPPQVPPH bmy_11578T0/1-1129 KHENEVAQNG GAETSHTEPV SPIPKPLPVP VPPIPVPAPI TVPPPQVPPH 701 750 ENSBTAP00000025104/1-1148 QPGPPVVGAL QPPAFTPPLG IPPPGFGPGV PPPPPPPPFL RPGFNPMHLP ENSP00000286835/1-1147 QPGPPVVGAL QPPAFTPPLG IPPPGFGPGV PPPPPPPPFL RPGFNPMHLP BACU010383/1-842 QPGPPVVGAL QPPTFTPPLG IPPPGFGPGV PPPPPPPPFL RPGFNPMHLP ENSTTRP00000010404/1-1121 QPGPPVVGAL QPPTFTPPLG IPPPGFGPGV PPPPPPPPFL RPGFNPMHLP bmy_11578T0/1-1129 QPGPPVVGAL QPPTFTPPLG IPPPGFGPGV PPPPPPPPFL RPGFNPMHLP 751 800 ENSBTAP00000025104/1-1148 PGFLPPGPPP PITPPVSIPP PHTPPISIPN STIAGINEDT TKDLSIGNPI ENSP00000286835/1-1147 PGFLPPGPPP PITPPVSIPP PHTPPISIPN STIAGINEDT TKDLSIGNPI BACU010383/1-842 PGFLPPGPPP PITPPVSIPP PHTPPINIPN STIAGINEDT TKDLSIGNPI ENSTTRP00000010404/1-1121 PGFLPPGPPP PITPPVSIPP PHTPPINIPN STIAGINEDT TKDLSIGNPI bmy_11578T0/1-1129 PGFLPPGPPP PITPPVSIPP PHTPPINIPN STIAGINEDT TKDLSIGNPI 801 850 ENSBTAP00000025104/1-1148 PTVVSGARGN AESGDSVKMY GSAVPPAAPT NLPTPPVTQP VSLLGTQGVA ENSP00000286835/1-1147 PTVVSGARGN AESGDSVKMY GSAVPPAAPT NLPTPPVTQP VSLLGTQGVA BACU010383/1-842 PTVVSGARGN AESGDSVKMY GSAVPPAAPT NLPTPPVTQP VSLLGK---- ENSTTRP00000010404/1-1121 PTVVSGARGN AESGDSVKMY GSAVPPAAPT NLPTPPVTQP VSLLGTQG-- bmy_11578T0/1-1129 PTVVSGARGN AESGDSVKMY GSAVPPAAPT NLPTPPVTQP VSLLGTQGVA 851 900 ENSBTAP00000025104/1-1148 PGPVIGLQAP STGLLGARPG LIPLQRPPGM PPPHLQRFPL MPPRPMPPHM ENSP00000286835/1-1147 PGPVIGLQAP STGLLGARPG LIPLQRPPGM PPPHLQRFPL MPPRPMPPHM BACU010383/1-842 ---------- ---------- ---------L SFLSLVFFPL ---------- ENSTTRP00000010404/1-1121 ---VIGLQAP STGLLGARPG LIPLQRPPGM PPPHLPRFPL MPPRPMPPHM bmy_11578T0/1-1129 PGPVIGLQAP STGLLGARPG LIPLQRPPGM PPPHLPRFPL MPPRPMPPHM 901 950 ENSBTAP00000025104/1-1148 MHRGPPPGPG GFGMPPPHGM KGPFPPHGPF VRPGGMPGLG GPGPGPGGPE ENSP00000286835/1-1147 MHRGPPPGPG GFAMPPPHGM KGPFPPHGPF VRPGGMPGLG GPGPGPGGPE BACU010383/1-842 ---------- ---------- ----PKLGFL YKQC------ ---------- ENSTTRP00000010404/1-1121 MHRGPPPGPG GFGMPPPHGM KGPFPPHGPF VRPGGVPGLG GPGPGPGGPE bmy_11578T0/1-1129 MHRGPPPGPG GFGMPPPHGM KGPFPPHGPF VRPGGVPGLG GPGPGPGGPE 951 1000 ENSBTAP00000025104/1-1148 DRDGRQPPPQ QQQQQQQQPP AQPP----PQ QPPPAQQPPP AQQQPQPFRN ENSP00000286835/1-1147 DRDGRQQPPQ QPQQQPQPQA PQQPQQQQQQ QPPPSQQPPP TQQQPQQFRN BACU010383/1-842 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010404/1-1121 ERDGRQPQQQ QQQQQQPPPA P-QA----QQ QPPTQP-PQP PPTQPQPFRN bmy_11578T0/1-1129 DRDGRQPPPQ QP-----PPA P-QP----QQ QPPTQPSQPQ PPTQPQPFRN 1001 1050 ENSBTAP00000025104/1-1148 DSRQQQFNSG RDQERFGRRS FGNRVENDRE RYGNRNDDRE NSNRERREWG ENSP00000286835/1-1147 DNR-QQFNSG RDQERFGRRS FGNRVENDRE RYGNRNDDRD NSNRDRREWG BACU010383/1-842 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010404/1-1121 DNR-QQFTSG RDQERFGRRS FGNRVENDRE RYGNRNDDRE NSNRERREWG bmy_11578T0/1-1129 DNR-QQFTSG RDQERFGRRS FGNRVENDRE RYGNRNDDRE NSNRERREWG 1051 1100 ENSBTAP00000025104/1-1148 RRSPDRDRHR DLEDRNRRSS GHRDRERDSR DRESRREKEE NRGKEKPEVA ENSP00000286835/1-1147 RRSPDRDRHR DLEERNRRSS GHRDRERDSR DRESRREKEE ARGKEKPEVT BACU010383/1-842 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010404/1-1121 RRSPDRDRHR DLEERNRRSS GHRDRERDSR DRESRREKEE NRGKEKPEVT bmy_11578T0/1-1129 RRSPDRDRHR DLEERNRRSS GHRDRERDSR DRESRREKEE NRGKEKPEVT 1101 1150 ENSBTAP00000025104/1-1148 DRAGSNKTVE PPISQAGNVD TVSELPKGEP GPAVAKPSEE LPAEATSSVN ENSP00000286835/1-1147 DRAGGNKTVE PPISQVGNVD TASELEKGVS EAAVLKPSEE LPAEATSSVE BACU010383/1-842 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010404/1-1121 DRAGGNKTVE PPISQVGNVD TVSELDKGES ESAVVKPSEE LPAEATSSVE bmy_11578T0/1-1129 DRAGGNKTVE PPISQVGNVD TVSELDKGES ESAVVKPSEE LPAEATSSVE 1151 1200 ENSBTAP00000025104/1-1148 PEKDPGSAAE APR ENSP00000286835/1-1147 PEKDSGSAAE APR BACU010383/1-842 ---------- --- ENSTTRP00000010404/1-1121 PEKDSGSAAE APR bmy_11578T0/1-1129 PEKDSGSAAE APR