KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:02 2014 Check: 00 .. Name: ENSTTRP00000015438/1-703 Len: 806 Check: 3254 Weight: 1.00 Name: ENSBTAP00000025116/1-801 Len: 806 Check: 1027 Weight: 1.00 Name: ENSP00000334375/1-712 Len: 806 Check: 4401 Weight: 1.00 Name: bmy_02325T0/1-669 Len: 806 Check: 7444 Weight: 1.00 Name: BACU003822/1-517 Len: 806 Check: 6585 Weight: 1.00 // 1 50 ENSTTRP00000015438/1-703 MAAAGLVAVA TAAEYSGPVA SGGNLSVVNC GPNSGAGPGP GPGSWSRSLD ENSBTAP00000025116/1-801 MAAAGLVAVA AAAEYSCPGA SGGNLSAVNC GPNSGAGPGP GPGSWSRSLD ENSP00000334375/1-712 MAAAGLVAVA AAAEYSGTVA SGGNLPGVHC GPSSGAGPGF GPGSWSRSLD bmy_02325T0/1-669 MELASTILML NAIH------ ---------- ---------- ---------- BACU003822/1-517 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000015438/1-703 RALEEAAVTG VLSLSGRKLR EFPRGAANHD LTDTTRADLS RNRLSEIPIE ENSBTAP00000025116/1-801 RALEEAAVTG VLSLSGRKLR EFPRGAANHD LTDTTRADLS RNRLSEIPIE ENSP00000334375/1-712 RALEEAAVTG VLSLSGRKLR EFPRGAANHD LTDTTRADLS RNRLSEIPIE bmy_02325T0/1-669 ---------- ---------- ---------- -------DLS RNRLSEIPIE BACU003822/1-517 ---------- ---------- ---------- ---------- --------IE 101 150 ENSTTRP00000015438/1-703 ACHFVSLENL NLYQNCIRYI PEAILNLQAL TFLNIXXXXX XXXXXXXXXX ENSBTAP00000025116/1-801 ACHFVSLENL NLYQNCIRYV PEAILNLQAL TFLNISRNQL STLPVHLCEL ENSP00000334375/1-712 ACHFVSLENL NLYQNCIRYI PEAILNLQAL TFLNISRNQL STLPVHLCNL bmy_02325T0/1-669 ACHFVSLENL NLYQNCIRYI PEAVLNLQAL TFLNISRNQL STLPVHLCDL BACU003822/1-517 ACHFVSLENL NLYQNCIRYI PEAILNLQAL TFLNISRNQL STLPVHLCDL 151 200 ENSTTRP00000015438/1-703 XXXXXXXXXX XXXXXXXXXX XXXXXXXXDV SCNEIQTIPS QIGNLEALRD ENSBTAP00000025116/1-801 PLKVLIASNN KLVSLPEEIG HLRHLTELDV SCNEIQTIPS QIGNLEALRD ENSP00000334375/1-712 PLKVLIASNN KLVSLPEEIG HLRHLMELDV SCNEIQTIPS QIGNLEALRD bmy_02325T0/1-669 PLKVLIASNN KLVSLPEEIG HLRHLTELDV SCNEIQTIPS QIGNLEALRD BACU003822/1-517 PLKVLIASNN KLVSLPEEIG HLRHLTEL-- ---------- ---------- 201 250 ENSTTRP00000015438/1-703 LNVRRNHLVR LPEQLAELPL IRLDFSCNKI TTIPVCYRNL RHLQMITLDN ENSBTAP00000025116/1-801 LNVRRNHLVR LPEELAELPL IRLDFSCNKI TTIPVCYRNL RHLQMITLDN ENSP00000334375/1-712 LNVRRNHLVH LPEELAELPL IRLDFSCNKI TTIPVCYRNL RHLQTITLDN bmy_02325T0/1-669 LNVRRNHLVR LPEELAELPL IRLDFSCNKI TTIPVCYRNL RHLQMITLDN BACU003822/1-517 ---------- ---------- ---------- ---------- ---------- 251 300 ENSTTRP00000015438/1-703 NPLQSPPAQI CIKGKIHIFK YLNIQACKIA PDLPDYDRRP MGFGSXXXXX ENSBTAP00000025116/1-801 NPLQSPPAQI CIKGKIHIFK YLNMQACKIA PDLPDYDRRP MGFGSCHEEL ENSP00000334375/1-712 NPLQSPPAQI CIKGKVHIFK YLNIQACKIA PDLPDYDRRP LGFGSCHEEL bmy_02325T0/1-669 NPLQSPPAQI CIKGKIHIFK YLNIQACKIA PDLPDYDRRP MGFGSCHEEL BACU003822/1-517 ---------I CIKGKIHIFK YLNIQACKIA PDLPDYDRRP MGFGSCHEEL 301 350 ENSTTRP00000015438/1-703 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000025116/1-801 YSGRPYGALD SGFNSVDSGD KRWSGNEPTD EFSDLPLRVA EITKEQRLRR ENSP00000334375/1-712 YSSRPYGALD SGFNSVDSGD KRWSGNEPTD EFSDLPLRVA EITKEQRLRR bmy_02325T0/1-669 YSGRPYGALD SGFNSVDSGD KRWSGNEPTD EFSDLPLRVA EITKEQRLRR BACU003822/1-517 YSGRPYGALD SGFNSVDSGD KRWSGNEPTD EFSDLPLRVA EITKEQRLRR 351 400 ENSTTRP00000015438/1-703 XXXXXXXXXX XXXXXXXXEH DLDQIDYIDS CTAEEEEEEV RPPKGLDSDS ENSBTAP00000025116/1-801 ENQYQENHSS LVVTNGGVEH ELDQIDYIDS CTAEEDEDEV RPHKGLDSDS ENSP00000334375/1-712 ESQYQENRGS LVVTNGGVEH DLDQIDYIDS CTAEEEEAEV RQPKGPDPDS bmy_02325T0/1-669 ESQYQENRSS IVVTNGGVEH DLDQIDYIDS CTAEEEEEEV RPPKGLDSDS BACU003822/1-517 ESQYQENRSS IVVTNGGVEH DLDQIDYIDS CTAEEEEEEV RPPKGLDSDS 401 450 ENSTTRP00000015438/1-703 LSSQFMAYIE QRRISHEGSP VKPVPMREFQ KTEDTRRYSH QNRV--PAEP ENSBTAP00000025116/1-801 LSSQFMAYIE QRRISHEGSP IKPIPMREFQ KTEDMRRYSH QNRIRVPAEP ENSP00000334375/1-712 LSSQFMAYIE QRRISHEGSP VKPVAIREFQ KTEDMRRYLH QNRV--PAEP bmy_02325T0/1-669 LSSQFMAYIE QRRISHEGSP VKPVPMREFQ KTEDMRRYSH QNRI--PAEP BACU003822/1-517 LSSQFMAYIE QRRISHE--- ---------- ---------- ---------- 451 500 ENSTTRP00000015438/1-703 SSLLSLSPSH NQFSHADLEL HRRREHLLER TRREAQL-AL QYEEKIIQ-- ENSBTAP00000025116/1-801 SSLLSVSPSH NQFSQTDLEL HRRREQLVER TRREAQLAAL QYEEEKIRTK ENSP00000334375/1-712 SSLLSLSASH NQLSHTDLEL HQRREQLVER TRREAQLAAL QYEEEKIRTK bmy_02325T0/1-669 SSLLSLSPSH NQFSHADLEL HRRREQLIER TRREAQLAAL QYEEEKIRTK BACU003822/1-517 ---------- --FSHADLEL HRRREQLIER TRREAQLAAL QYEEEKVRTK 501 550 ENSTTRP00000015438/1-703 --QRDAVLNV QK--ASQSPQ KQHSPL---D GECPFPSRRS QHTDDSALLV ENSBTAP00000025116/1-801 QIQRDAVLDF VKQKASQSPQ KQHTPL---V GECPFPSRRS QHTDDSALLV ENSP00000334375/1-712 QIQRDAVLDF VKQKASQSPQ KQHPLLDGVD GECPFPSRRS QHTDDSALCM bmy_02325T0/1-669 QIQRDAVLDF VK-------- ---------- --CPFPSRRS QHTDDSALLV BACU003822/1-517 QIQRDAVLDF VK-------- ---------- ---------- ---------- 551 600 ENSTTRP00000015438/1-703 SLSGVNQVGC AATLPHSSAF RPLKNDHRSN AVSSSPTTET VHHSPAYSFP ENSBTAP00000025116/1-801 SLSGVNQVGY AAPLPPASAF RPLQNDDRSN AVSNSPTTET AHHSPAYSFP ENSP00000334375/1-712 SLSGLNQVGC AATLPHSSAF TPLKSDDRPN ALLSSPATET VHHSPAYSFP bmy_02325T0/1-669 SLSGVNQVGC AATLPHSSAF RPLKNDHRSN AISSSPTTET VHHSPAYSFP BACU003822/1-517 SLSGVNQVGC AATLPHSSAF RPLKNDHRSN AISSSPTTET VHHSPAYSFP 601 650 ENSTTRP00000015438/1-703 AAIQRNQAQR PESFLFRGAV RAETNKGHAS PLLSSSAPTT DFKDPVTRQN ENSBTAP00000025116/1-801 AAIQRNQPQR PESFLFRGAV RTETNKGHAS PLLSSSVPTT DLKDPVTRQN ENSP00000334375/1-712 AAIQRNQPQR PESFLFRAGV RAETNKGHAS PLPPSAAPTT DSTDSITGQN bmy_02325T0/1-669 AAIQRNQAQR PESFLFRGAV RAETNKGHAS PLLSSSAPTT DFKDPVTRQN BACU003822/1-517 AAIQRNQAQR PESFLFRGAI RAETNKGHAS PLLSSSAPTT DFKDPVTRQN 651 700 ENSTTRP00000015438/1-703 SRQREEELEL IDQLRKHIEY RLKVSLPCDL GAALTDGVVL CHLANHVRPR ENSBTAP00000025116/1-801 SRQREEELEL IDQLRKHIEY RLKVSLPCDL GAALTDGVVL CHLANHVRPR ENSP00000334375/1-712 SRQREEELEL IDQLRKHIEY RLKVSLPCDL GAALTDGVVL CHLANHVRPR bmy_02325T0/1-669 SRQREEELEL IDQLRKHIEY RLKVSLPCDL GAALTDGVVL CHLANH---- BACU003822/1-517 SRQREEELEL IDQLRKHIEY RLKVSLPCDL GAALTDGVVL CHLANHVRPR 701 750 ENSTTRP00000015438/1-703 SVPSIHVPSP AVVSL----- ---------- ---------- ---------- ENSBTAP00000025116/1-801 SVPSIHVPSP AVPKLTMAKC RRNVENFLEA CRKIGVPQDN LCSPSDILQL ENSP00000334375/1-712 SVPSIHVPSP AVVS------ ---------- ---------- ---------- bmy_02325T0/1-669 ---------- --PKLTMAKC RRNVENFLEA CRKIGVPQEQ LCLPLHILEE BACU003822/1-517 SVPSIHVPSP AVPKLTMAKC RRNVENFLEA CRKIGVPQEQ LCLPLHILEE 751 800 ENSTTRP00000015438/1-703 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025116/1-801 N--LSVKRTV ETLLSLGAHS EESSFVSLSI QLLGFVAFYC TLMLTLCMLY ENSP00000334375/1-712 ---------- ---------- ---------- ---------- ---------- bmy_02325T0/1-669 KGLSQVALTV QALLELAPPK QQQQHQLSAV ---------- ---------- BACU003822/1-517 KGLSQVALTV QALLELAPPK QQ-QHQLSAV ---------- ---------- 801 850 ENSTTRP00000015438/1-703 ------ ENSBTAP00000025116/1-801 YWIFPL ENSP00000334375/1-712 ------ bmy_02325T0/1-669 ------ BACU003822/1-517 ------