KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:03 2014 Check: 00 .. Name: ENSP00000373610/1-1139 Len: 1157 Check: 555 Weight: 1.00 Name: ENSBTAP00000025120/1-1139 Len: 1157 Check: 1343 Weight: 1.00 Name: ENSTTRP00000014820/1-1065 Len: 1157 Check: 2197 Weight: 1.00 Name: BACU018206/1-1097 Len: 1157 Check: 7194 Weight: 1.00 Name: bmy_12032T0/1-828 Len: 1157 Check: 8389 Weight: 1.00 // 1 50 ENSP00000373610/1-1139 MSQEPTTYSL ----FLFLFL SHGVSSYTVP NSRQDLHPLL QNMAEEIIDG ENSBTAP00000025120/1-1139 MSQEPWRCSL ----WLFLFL SHGVASYSVP DSQADLHPLL QKMAEEIIDG ENSTTRP00000014820/1-1065 MSQEPRTYSL ----LLFLFL SHGVASHGVP DSRQDLPPLL QKMAEEIIDG BACU018206/1-1097 MEWQVMEFQI PGRTFVFLRV IQFNSIYTFN GFVADLPPLL QKMA------ bmy_12032T0/1-828 MEWQVMEFQI PGRIFVFLRV IQFNSIYTFN GFVADLPPLL QKMAEEIIDG 51 100 ENSP00000373610/1-1139 SYLNALLDLI QFQSSHVWTD DLSHRVLAYL NSRNVAFTIP SLQAAVENHL ENSBTAP00000025120/1-1139 SYLNALLDLI QFQSSQVWTS DLSHRVLAYL NSRNVAFTIP SLKAAMENLL ENSTTRP00000014820/1-1065 SYLNALLDLI QFQSSHVWTA DLSHRVVAYL NSRNVAFTIP SLQAVMEHHL BACU018206/1-1097 ---------- ---------- ---------- ---------- ---AAMENHL bmy_12032T0/1-828 SYLNALLDLI QFQSSHVWTA DLSRRVLAYL NSRNVAFTIP SLQAAMENHL 101 150 ENSP00000373610/1-1139 EQRLHQPQKL LEDLRKTDAQ QFRTAMKCLL EDKKDGLDLK DIIIDLGEIR ENSBTAP00000025120/1-1139 EQRLYQPQKL LEDLRGTDAQ QFHTAMKYLL EDKKDRLELD DIIIDLGEVR ENSTTRP00000014820/1-1065 EQCLYQPWKL LEDLRGTDAQ QFRTAMKCLL EDKKDRLELD DITVDLGEIR BACU018206/1-1097 EQCLYQPWKL LEDLRGTDAQ QFRTAMKCLL EDKKDRLELD DITVDLGEIR bmy_12032T0/1-828 EQCLYQPWKL LEDLRGTDAQ QFRTAMKCLL EDKKDRLELD DITVDLGDIR 151 200 ENSP00000373610/1-1139 ERALQSPGVN RSLFLITLER CFQMLNSLEC VEILGKVLRG SSGSFLQPDI ENSBTAP00000025120/1-1139 KQALQSPGVN RSLFLITLER CFQVLNPLDC VEILGRVLRG SSGRFLQPDI ENSTTRP00000014820/1-1065 KQALQSPGVN RSLFLITLER CFQVLNPLEC VEILGRVLRG SSGHFLQPDI BACU018206/1-1097 KQALQSPGVN RSLFLITLER CFQVLNPLEC VEILGRVLRG SSGHFLQPDI bmy_12032T0/1-828 KQALQSPGVN RSLFLITLER CFQVLNPLEC VEILGRVLRG SSGXFLQPDI 201 250 ENSP00000373610/1-1139 TERLPRDLRE DAFKNLSAVF KDLYDKTSAH SQRALYSWMT GILQTSSNAT ENSBTAP00000025120/1-1139 TEMLPRDLRE DAFKNLSALF KDLYDQTSAH AQRAVYCWMT GVLKTSSNVT ENSTTRP00000014820/1-1065 TERLPRDLRE DAFKNLSVVF KDLYDQTSAH SQRAVYSWMT GILQTSSNGT BACU018206/1-1097 TERLPRDLHE DAFKNLSVVF KDLYDQTSAH SQRALYSWMT GILQTSSNGT bmy_12032T0/1-828 TERLPRDLRE DAFKNLSVVF KDLYDQTSAH SQRALYSWMT GILQTSSNGT 251 300 ENSP00000373610/1-1139 DDSASWVSAE HLWVLGRYMV HLSFEEITKI SPIEIGLFIS YDNATKQLDM ENSBTAP00000025120/1-1139 DDSFSWVSAE NLWILGRYMV HLPFEEIMRI SPMEIGLFIS YDNATKQLDT ENSTTRP00000014820/1-1065 DDSVSWVSAE NLWILGRYMV HLSFEEIMNI SPIEIGLFIS YDNATKQLDT BACU018206/1-1097 DDSVSWVSAE NLWILGRYMV HLSFEEITKI SPIEIGLFIS YDNATKQLDT bmy_12032T0/1-828 DDSVSWVSAE NLWILGRYMV HLSFEEIMKI SPIEIGLFIS YDNATKQLDT 301 350 ENSP00000373610/1-1139 VYDITPELAQ AFLERISSSN FNMRNTSTIH R--------- -----LGLLV ENSBTAP00000025120/1-1139 VYDVTPELAQ AFLERISSSN FDMRNTSTIH R--------- -----LGLLV ENSTTRP00000014820/1-1065 VYDITPELAQ AFLERISSSN FDVRNTSTIH RQGRGRWPLE LFPKMLGLLV BACU018206/1-1097 VYDITPELAQ AFLERISSSN FDVRNTSTIH RQG------- ----ALGLLV bmy_12032T0/1-828 VYDITPELAQ AFLERISSSN FDVRNTSTIH RQG------- ----ALGLLV 351 400 ENSP00000373610/1-1139 CFYNDLELLD ATVAQVLLYQ MIKCSHLRGF QAGVQKLKAE LLDIAMENQT ENSBTAP00000025120/1-1139 CFYDDLELLD AAVAQVLLHQ MIKCSHLRGF QAGVQKLKAE LLEIATENQT ENSTTRP00000014820/1-1065 CFYDDLELLD AAVAQVLLHQ MIKCSHLRGF QAGVQKLKAD LLEIATENQT BACU018206/1-1097 CFYDDLELLD AAVAQVLLHQ MIKCSHLRGF QAGVQKLKAD LLEIATENQT bmy_12032T0/1-828 CFYDDLELLD AAVAQVLLHQ MIKCSHLRGF QAGVQKLKAD LLEIATENQT 401 450 ENSP00000373610/1-1139 LNETLGSLSD AVVGLTYSQL ESLSPEAVHG AISTLNQVSG WAKSQVIILS ENSBTAP00000025120/1-1139 LNETLGSLSD AVVGLTHSQL ESLSPEAVHS AISTLNQVSG WARSQVIILS ENSTTRP00000014820/1-1065 LNETLGSLSD AVVGLTHSQL ESLCPEAVHG AISTLNQVSG WAKSQVIILS BACU018206/1-1097 LNETLGSLSD AVVGLTHSQL ESLCPEAVHS AISTLNQVSG WAKSQVVILS bmy_12032T0/1-828 LNETLGSLSD AVVGLTHSQL ESLCPEAVHG AISTLNQVSG WAKSQVVILS 451 500 ENSP00000373610/1-1139 AKYLAHEKVL SFYNVSQMGA LLAGVSTQAF CSMKRKDISQ VLRSAVSQYV ENSBTAP00000025120/1-1139 AKYLAHQKVL SFYNISQMGV LLAGVGTQAF HTMDRRDLMQ LLRSATSLHV ENSTTRP00000014820/1-1065 AKYLAHEKVL SFYNVSQMGV LLAGVGTQAF HAMDRRDLVQ LLRSTISLHV BACU018206/1-1097 AKYLAHEKVL SFYNVSQMGV LLAGVGTQAF QAMDRRDLVQ LLRSAVSLHV bmy_12032T0/1-828 AKYLAHEKVL SFYNVSQMGV LLAGVGTQAF HAMDRRDLMQ LLRSAVSLHV 501 550 ENSP00000373610/1-1139 SDLSPAQQQG ILSKMVQAED TAPGIVEIQG AFFKEVSLFD LRRQPGFNST ENSBTAP00000025120/1-1139 SDLSPAQQHA VLSKVMEAGD TASGIVKIQG ALFKEVSLFD LWREPGFNST ENSTTRP00000014820/1-1065 SDLSPAQQHG VLSKVMEAGD TASGIVEIQG AFFKEVSLFD LWREPGFNST BACU018206/1-1097 SDLSPAQQHG VLSKVMEAGD TTSDIVEIQG AFFKEVSLFD LWREPGFNPT bmy_12032T0/1-828 SDLSPAQQHG VLSK------ ---------- ---------- ---------- 551 600 ENSP00000373610/1-1139 VLKDKELGRS QALFLYELLL KTTRRPEELL SAGQLVKGVT CSHIDAMSTD ENSBTAP00000025120/1-1139 VLKEKEIRRS QALFLFELLS KTTRRPEELL SAGQLLKGVT CPHIDAMSAD ENSTTRP00000014820/1-1065 VLKEKELRRS QALFLFELLS KTTRRPEELL SAGQLVKGVM CSHIEAMSVD BACU018206/1-1097 VLKEKELRRS QALFLFELLS KTARRPEELL SAGQLVKGVM CSHIEAMSVD bmy_12032T0/1-828 ---------- -ALFLFELLS KTTRRPEELL STGQLVKGVM CSHIEAMSVD 601 650 ENSP00000373610/1-1139 FFLAHFQDFQ NNFALLSPYQ VNCLAWKYWE VSRLSMPPFL LAALPARYLA ENSBTAP00000025120/1-1139 SFLAHFQYFE NNFSLLSPYQ VNCLAWKYWE VSRSSMPPFL LAALPARYLA ENSTTRP00000014820/1-1065 SFLAHFQYFE NNFSLLSPYQ XXXXXXXXXX XXXXXXXXXX XXXXXARYLA BACU018206/1-1097 SFLAHFQYFE NNFSLLSPYQ INCLAWKYWE VSRSSMPPFL LATLPARYLA bmy_12032T0/1-828 SFLAHFQYFE NNFSLLSPYQ ---------- ---------- ---------- 651 700 ENSP00000373610/1-1139 SVPASQCVPF LISLGKSWLD SLVLDSHKKT SVLRKVQQCL DDSIADEYTV ENSBTAP00000025120/1-1139 SIPASQCVPF LISLGKSQLD SLVLDSHKKN SILKKVQQCL SHTIADEYTV ENSTTRP00000014820/1-1065 SVPASQCVPF LISLGKSQLD SLVLDSHKKN SVLKKVQQCL NDSVADEYTV BACU018206/1-1097 SVPDSQCVPF LISLGKSQLD SLVLDSHKKN SVLKKVQQCL NDSVADEYTV bmy_12032T0/1-828 ---------- ---------- ---------- ---------- NDSVADEYTV 701 750 ENSP00000373610/1-1139 DIMGNLLCHL PAAIIDRGIS PRAWATALHG LRDCPDLNPE QKAAVRLKLL ENSBTAP00000025120/1-1139 DILGNLLCHL PAAVIRRGLS PRAWATALRG LRDCLDLSPQ QKAALRLRLL ENSTTRP00000014820/1-1065 DILGNLLCHL PAAVIHRGVS PRAWATALHS LRDCLDLSPQ QKVAVKLRLL BACU018206/1-1097 DILGNLLCHL PAAVIRRGVS PRAWATALHS LRDCLDLSPQ QKVAVRLRLL bmy_12032T0/1-828 DILGNLLCHL PAAVIHRGVS PRAWATALHS LRDCLDLSPQ QKVAVRLRLL 751 800 ENSP00000373610/1-1139 GQYGLPQHWT AETTKDLGPF LVLFSGDELS SIATKFPEIL LQAASKMART ENSBTAP00000025120/1-1139 EQHGLPQNWT AETAKDLESF LVIFSGDELS SVATKFPDIL QQTASKMAGT ENSTTRP00000014820/1-1065 EQHGLPQNWT AETTKDLGPF LVLFSGDELS SVATKFPDIL QQTASKMAGT BACU018206/1-1097 EQHGLPQNWT AETTKDLGPF LVLFSGDELS SVATKFPDIL QQTASKMAGT bmy_12032T0/1-828 EQHGLPQNWT AETTKDLGPF LVLFSGDELS SVATKFPDIL QQTASKMAGT 801 850 ENSP00000373610/1-1139 LPTKEFLWAV FQSVRNSSDK IPSYDPMPGC HGVVAPSSDD IFKLAEANAC ENSBTAP00000025120/1-1139 LPPKEFLQAV FESVRNSSAE KPSRDPSPGC HGIMAPSSND IIKLAEANAC ENSTTRP00000014820/1-1065 LPPKEFLQAV FESVRNSSEE SPSSDRSPGC HGVSAPSSND IIKLAEANAC BACU018206/1-1097 LPPKEFLQAV FESVRNSSEE SPSSDRSPGC HGVSAPSSND IIKLGEANAC bmy_12032T0/1-828 LPPKEFLQAV FESVRNSSEE SPSSDRSPGC HGVSAPSSND IIKLAEANAC 851 900 ENSP00000373610/1-1139 WALEDLRCME EDTFIRTVEL LGAVQGFSRP QLMTLKEKAI QVWDMPSYWR ENSBTAP00000025120/1-1139 WAPEDLLCLE EDTFLRSVEL LGAVRSFSLA QLRKLKEKAV QVWDMPSSWR ENSTTRP00000014820/1-1065 WAPEGLLCLG EDAFLRSVEL LGAVRSFSPA QLRTLKEKAV QVWDTPSYWR BACU018206/1-1097 WAPEGLLCLG EDAFLRSVEL LGAVRSFSPA QLRTLKEKAV QVWDTPSYWR bmy_12032T0/1-828 WAPEGLLCLG EDAFLRSVEL LGAVRSFSPA QLRTLKEKAV QV--KPISGR 901 950 ENSP00000373610/1-1139 EHHIVSLGRI ALALNESELE QLDLSSIDTV ASLSWQTEWT PGQAESILQG ENSBTAP00000025120/1-1139 EYHIVSLGRI ALALNESELE QLDLSSIDTV ASLSQQTEWT PGQAKSILQG ENSTTRP00000014820/1-1065 EYHLVSLGRI VLALTESELE QLDLSSIDTV ASLSQQTEWT PGQAKSILQG BACU018206/1-1097 EYHLASLGRI VLALTESELE QLDLSSIDTV ASLSQQTEWT PGQAKSILQG bmy_12032T0/1-828 KH-------- ----SQRETQ H--------- ---------- --RAKSILQG 951 1000 ENSP00000373610/1-1139 YLDDSGYSIQ DLKSFHLVGL GATLCAINIT EIPLIKISEF RVVVARIGTL ENSBTAP00000025120/1-1139 FLEDSGYRVQ DLKSFHLVGL GAALCAMNIT EISLIKILEF RVVVARIGTL ENSTTRP00000014820/1-1065 FLEDSGYSVQ DLKSFHLVGL GATLCAMNIT EISLIKISEF RVVVARIGTL BACU018206/1-1097 FLEDSGYSVQ DLKSFHLVGL GATLCAMNIT EISLIKISEF RVVVARIGTL bmy_12032T0/1-828 FLEDSGYSVQ DLKSFHLVGL GATLCAMNIT EISLIKISEF R--------- 1001 1050 ENSP00000373610/1-1139 LCSTHVLAEF KRKAEVVFGD PTEWTSSVLQ ELGTIAAGLT KAELRMLDKD ENSBTAP00000025120/1-1139 LCSTQVLAEF KRKAEVVFGE PTEWSSFVLQ ELGTIAAGLT KEELRMLDKD ENSTTRP00000014820/1-1065 VCSTRVLAEF KRKAEVVFGG PTEWSSSVLQ ELGTIAAGLS KEELRMLDKD BACU018206/1-1097 LCSTHVLAEF KRKAEVVFGG PTEWSSSVLQ ELGTIAAGLS KEELRMLDKD bmy_12032T0/1-828 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000373610/1-1139 LMPYFQPSAI KCLPDEIFKE LSAEQIASLG PENAAAVTHA QRRRLSPLQL ENSBTAP00000025120/1-1139 LMPYFQPSAI KCLPDEIFKE LSAEQIASLG PENAAAVTPA QRRQLSMLQL ENSTTRP00000014820/1-1065 LMPYFQPSAI RCLPDEIFK- ---------- ---------- ---------- BACU018206/1-1097 LMPYFQPSAI KCLPDEIFKE LSAEQIASLG PENAAAVTPA QRRQLSMLQL bmy_12032T0/1-828 ---------- ---------- ---------- ---------- ---------- 1101 1150 ENSP00000373610/1-1139 QSLQQALDGA KTHSWQDAPA SAGPTRTSSS RSPAGALQSW GLWLGCPLLV ENSBTAP00000025120/1-1139 QSLQRAIDGA KARSWLDAPP SASPARTPSS LSPPGVWVSR GLGLGYLLLV ENSTTRP00000014820/1-1065 ---------- ---------- ---------- ---------- ---------- BACU018206/1-1097 QSLQRTLDGA KTRSWLDEPP SASPTRTPSS LSPPGAWVSQ GLGLGCPLLV bmy_12032T0/1-828 ---------- ---------- ---------- ---------- ---------- 1151 1200 ENSP00000373610/1-1139 LMAKLLW ENSBTAP00000025120/1-1139 LMPKLVW ENSTTRP00000014820/1-1065 ------- BACU018206/1-1097 LMPRLVW bmy_12032T0/1-828 -------