KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:04 2014 Check: 00 .. Name: ENSP00000253496/1-615 Len: 663 Check: 6747 Weight: 1.00 Name: bmy_08374T0/1-485 Len: 663 Check: 9020 Weight: 1.00 Name: BACU002880/1-475 Len: 663 Check: 2005 Weight: 1.00 Name: ENSBTAP00000025122/1-612 Len: 663 Check: 2330 Weight: 1.00 Name: ENSTTRP00000009076/1-618 Len: 663 Check: 4709 Weight: 1.00 // 1 50 ENSP00000253496/1-615 MRALLLLGFL LVSLESTLSI PPWEAPKEHK YKAEEHTVVL TVTGEPCHFP bmy_08374T0/1-485 ---------- ---------- ---------- ---------L TVTREPCHF- BACU002880/1-475 MRALLLLGVL L--------T PPWKAPKQHK FIESEHTV-- ---------- ENSBTAP00000025122/1-612 MRALLLLGAL LVSLESTVST PPWKGPKKHK LTESEHTVVL TVTGEPCHFP ENSTTRP00000009076/1-618 MRALLLLGVL LVSLESAVLT PPWKAPMEHK FIESERTVVL TVTGEPCHFP 51 100 ENSP00000253496/1-615 FQYHRQLYHK CTHKGRPGPQ PWCATTPNFD QDQRWGYCLE PKKVKDHCSK bmy_08374T0/1-485 ---------- ---------- ---------- ---------- ---------- BACU002880/1-475 ---------- ---------- ---------- ---------- -----DHCSK ENSBTAP00000025122/1-612 FQYHRQLHHK CTHRGRPGPR PWCATTPNFE KDQRWAYCLE PKKVKDHCSK ENSTTRP00000009076/1-618 FQYHWQLYHK FIHRGWPG-R PWCATTPNFK KDQRCGYCLE PKKVKDHCSK 101 150 ENSP00000253496/1-615 HSPCQKGGTC VNMPSGPHCL CPQHLTGNHC QKEKCFEPQL LRFFHKNEIW bmy_08374T0/1-485 ---------- ---------- ---------- -------P-- --FQYHRQLY BACU002880/1-475 HNPCQKGGTC VNMPNGPHCI CSDHFTGKHC QREKCFEPQL LWFFQKNEVW ENSBTAP00000025122/1-612 HNPCQKGGTC VNMPDGPRCI CADHFTGKHC QKEKCFEPQF FRFFHENEIW ENSTTRP00000009076/1-618 HKPCQKGETC VNMPNGPHCI CPDHFTGKHG QREKCFEPQL LWFLQENEIW 151 200 ENSP00000253496/1-615 YRTEQAAVAR CQCKG-PDAH CQRLASQACR TNPCLHGGRC LEVEGHRLCH bmy_08374T0/1-485 H--------K CIHRGWPGPD PGKTTPEVCR TNPCLNGGSC LQAEGHRLCR BACU002880/1-475 HRLELAGVAK CQCKG-PNAQ CKPLASQVCR TNPCLSGGSC LQAEGHRLCR ENSBTAP00000025122/1-612 HRLEPAGVVK CQCKG-PNAQ CKPLASQVCR TNPCLNGGSC LQAEGHRLCR ENSTTRP00000009076/1-618 HRLELAGVAK CQCNG-PNAQ CKPLASQVCR TNPCLNGGSC LQAEGHRLCS 201 250 ENSP00000253496/1-615 CPVGYTGAFC DVDTKASCYD GR--GLSYRG LARTTLSGAP CQPWASEATY bmy_08374T0/1-485 CPTGYAGRLC EVDFKANCYD DRDRGLSYRG VARTKLSGAP CQPWASEATY BACU002880/1-475 CPTGYAGRLC EVDFKANCYD DRDRGLSYRG VARTQLSGAP CQPWASEATY ENSBTAP00000025122/1-612 CAPSFAGRLC DVDLKASCYD DRDRGLSYRG MAGTTLSGAP CQSWASEATY ENSTTRP00000009076/1-618 YPTGYAGRLC EVDHKANCYD DRDHGLSYRG VARTKLWGAP CQPWASEATY 251 300 ENSP00000253496/1-615 RNVTAEQARN WGLGGHAFC- --------RN PDNDIRPWCF VLNRDRLSWE bmy_08374T0/1-485 WNVTAEQALN RRLGDHAFC- --------RN QDNDTRPWCF VWRGDRLSWN BACU002880/1-475 WNVTAEQALN RRLGDHAFC- --------RN QDNDTRPWCF VWRGDRLSWN ENSBTAP00000025122/1-612 WNVTAEQVLN WGLGDHAFCR ASTPPRGYRN PDNDTRPWCF IWKGDRLSWN ENSTTRP00000009076/1-618 WNVTAEQALN GRLGDHAFC- --------RN QDNDTRPWCF VWRDDRLSSN 301 350 ENSP00000253496/1-615 YCDLAQCQTP TQAAPPTPVS PRL-----HV PLMPAQPAPP KPQPTTRTPP bmy_08374T0/1-485 YCRLARCQAP APAAPQIPPP IRISSGYQYF PL-PSLSALQ KPQPTTQTPL BACU002880/1-475 YCRLARCQAP APGAPQIPPP IRISSGHQYF PL-PSLSALQ KPQPTTQTPL ENSBTAP00000025122/1-612 YCRLAPCQAA A--------- -----GHEHF PL-PSPSALQ KPESTTQTPL ENSTTRP00000009076/1-618 YCRLALCQAP APTTPQIPPP IRISSEHQYF PL-PSLSALQ KPQSTTQTPL 351 400 ENSP00000253496/1-615 QSQTPGALPA KR----EQPP SLTR----NG PLSCGQRLRK SLSSMTRVVG bmy_08374T0/1-485 RPLTSGSWER EI-------T GRATFQLIVG LPALSLGFSH RLVLADRAAD BACU002880/1-475 RPLTSGSWER LRIRAEKSRD ELATFQLIVG LPALSLGFSH RLVLAART-- ENSBTAP00000025122/1-612 PSLTSG-WCS P--------T PLAS----GG PGGCGQRLRK WLSSLNRVVG ENSTTRP00000009076/1-618 RPLTSGCWCS PP----EQRT PLPS----AG PAGCGRWLHK RLSSLSRVVG 401 450 ENSP00000253496/1-615 -----GLVAL RGAHPYIAAL YWGHSFCAGS LIAPCWVLTA AHCLQDRPAP bmy_08374T0/1-485 SPAQRGPGGL WTAAPQTAVL AEPRRRGTGG APRGAPLHRR AVAGPEFLHR BACU002880/1-475 ---------- ---------- ------CAGG A--------- ---------- ENSBTAP00000025122/1-612 -----GLVAL PGAHPYIAAL YWDQHFCAGS LIAPCWVLTA AHCLQNRPAP ENSTTRP00000009076/1-618 -----GLMAL PGAHPYIAAL -QGQNFCTGS LIVPC-VLTA AHCLQNRPAP 451 500 ENSP00000253496/1-615 EDLTVVLGQE ---------R RNHSCEPCQT LAVRSYRLHE AFSPVSYQHD bmy_08374T0/1-485 QPHRPLLGAD RGSLPAEPAR TESGARPGPP LAVRAYPLHE AFSRITYQHD BACU002880/1-475 ---------- ---------- -DSGARPGPP LVVRAYPLHE AFSRITYQHD ENSBTAP00000025122/1-612 KELTVVLGQD ---------R HNQSCEQCQT LAVRDYRLHE AFSPITYQHD ENSTTRP00000009076/1-618 EELTVVLGQD ---------R HNQSYEQCQT LAVRAYPLHE AFSLITYQHD 501 550 ENSP00000253496/1-615 LALLRLQEDA DGSCALLSPY VQPVCLPSGA ARP--SETTL CQVAG----- bmy_08374T0/1-485 LALVRLQESA EGCCAHPLPF VQPVCLPNSA ARPAESEAAL CEKEEAALRC BACU002880/1-475 LALVRLQESA EGCCAHPLSF VQPVCLPNTA ARPAESEPAL CEVAG----- ENSBTAP00000025122/1-612 LALVRLQESA DGCCAHPSPF VQPVCLPSTA ARPAESEAAV CEVAG----- ENSTTRP00000009076/1-618 LALVRLQESA EGCCAHPSPF VQPVCLPSSA ALPAESEAAL CEVAG----- 551 600 ENSP00000253496/1-615 --WGHQFEGA EEYASFLQEA QVPFLSLERC SAPDVHGSSI LPGMLCAGFL bmy_08374T0/1-485 RSSVRSAA-- ---------- -----PPPTC TEP-----PS PPGMLCAGFL BACU002880/1-475 --WGHHAD-- ---------- -----PKPRA LSR------- ---------- ENSBTAP00000025122/1-612 --WGHQFEGG -EYSSFLQEA QVPLIDPQRC SAPDVHGAAF TQGMLCAGFL ENSTTRP00000009076/1-618 --WGHQLEGP -GYSSFLQ-T QVPLIHPERC SAPDVHGAAF IPGMLCAGFL 601 650 ENSP00000253496/1-615 EGGTDACQGD SGGPLVCEDQ AAERRLTLQG IISWGSGCGD RNKPGVYTDV bmy_08374T0/1-485 EGGTDACQGD SRGPLVCEDE TAELQLILRG IVSWGSGCGD RHKPGVYTDV BACU002880/1-475 ---VSPTQGD SRGPLVCEDE TAELQFTLRG IFSWGSGCGD RHKPGVYTDV ENSBTAP00000025122/1-612 EGGTDACQGD SGGPLVCEDE TPERQLILRG IVSWGSGCGN RLKPGVYTDV ENSTTRP00000009076/1-618 EGGTDACQGN SRGPLVCEDE TAERQLILRG IVSWGSGCGD HHMPGVYTDV 651 700 ENSP00000253496/1-615 AYYLAWIREH TVS bmy_08374T0/1-485 ANYLAWIGEH TAS BACU002880/1-475 ANYLAWIREH TAS ENSBTAP00000025122/1-612 ANYLAWIREH TAS ENSTTRP00000009076/1-618 ANYLAWIREH TAS