KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:07 2014 Check: 00 .. Name: ENSTTRP00000001207/1-963 Len: 1051 Check: 529 Weight: 1.00 Name: BACU000352/1-1025 Len: 1051 Check: 9368 Weight: 1.00 Name: ENSBTAP00000025142/1-963 Len: 1051 Check: 3181 Weight: 1.00 Name: bmy_20847T0/1-989 Len: 1051 Check: 4101 Weight: 1.00 Name: ENSP00000361418/1-963 Len: 1051 Check: 4266 Weight: 1.00 // 1 50 ENSTTRP00000001207/1-963 MERREEQPGA AGVGAAPALD FILENVEKAL HQLYYDPNIE NKNLAQKWLM BACU000352/1-1025 MERREEQPGA AGAGAAPALD FTVENVEKAL HQLYYDPNIE NKNLAQKWLM ENSBTAP00000025142/1-963 MERREEQPGA AGAGAAPALD FTVENVEKAL HQLYYDPNIE NKNLAQKWLM bmy_20847T0/1-989 MERREEQPGA AGAGAAPALD FTVENVEKAL HQLYYDPNIE NKNLAQKWLM ENSP00000361418/1-963 MERREEQPGA AGAGAAPALD FTVENVEKAL HQLYYDPNIE NKNLAQKWLM 51 100 ENSTTRP00000001207/1-963 QAQVSPQAWH FSWQLLQPNK VPEIQYFGAS ALHIKISRYW SDIPTDQYES BACU000352/1-1025 QAQVSPQAWH FSWQLLQPNK VPEIQYFGAS ALHIKISRYW SDIPTDQYES ENSBTAP00000025142/1-963 QAQASPQAWH FSWQLLQPDK VPEIQYFGAS ALHIKISRYW SDIPTDQYES bmy_20847T0/1-989 QAQVSPQAWH FSWQLLQPNK VPEIQYFGAS ALHIKISRYW SDIPTDQYES ENSP00000361418/1-963 QAQVSPQAWH FSWQLLQPDK VPEIQYFGAS ALHIKISRYW SDIPTDQYES 101 150 ENSTTRP00000001207/1-963 LKAQLFTQIT RFASGSKIVL TRLCVALASL ALSMMPDAWP CAVADMVRLF BACU000352/1-1025 LKAQLFTQIT RFASGSKIVL TRLCVALASL ALSMMPDAWP CAVADMVRLF ENSBTAP00000025142/1-963 LKAQLFTQIT RFASGSKIVL TRLCVALASL ALSMMPDAWP CAVADMVRLF bmy_20847T0/1-989 LKAQLFTQIT RFASGSKIVL TRLCVALASL ALSMMPDAWP CAVADMVRLF ENSP00000361418/1-963 LKAQLFTQIT RFASGSKIVL TRLCVALASL ALSMMPDAWP CAVADMVRLF 151 200 ENSTTRP00000001207/1-963 QAEDSPVDGQ GRCLALLELL TVLPEEFQTS RLPQYRKSLV RASLAVECGA BACU000352/1-1025 QAEDSPVDGQ GRCLALLELL TVLPEEFQTS RLPQYRKSLV RASLAVECGA ENSBTAP00000025142/1-963 QAEDSPVDSQ GRCLALLELL TVLPEEFQTS RLPQYRKSLV RTSLAVECGA bmy_20847T0/1-989 QAEDSPVDGQ GRCLALLELL TVLPEEFQTS RLPQYRKSLV RASLAVECGA ENSP00000361418/1-963 QAEDSPVDGQ GRCLALLELL TVLPEEFQTS RLPQYRKGLV RTSLAVECGA 201 250 ENSTTRP00000001207/1-963 VFPLLEQLLQ QPSSPSCVRQ KVLKCFSSWV QLEVPLQDCE ALIQAAFAAL BACU000352/1-1025 VFPLLEQLLQ QPSSPSCVRQ KVLKCFSSWV QLEVPLQDCE ALIQAAFAAL ENSBTAP00000025142/1-963 VFPLLEQLLQ QPSSPSCVRQ KVLKCFSSWV QLEVPLQDCE ALIQAAFAAL bmy_20847T0/1-989 VFPLLEQLLQ QPSSPSCVRQ KVLKCFSSWV QLEVPLQDCE ALIQAAFAAL ENSP00000361418/1-963 VFPLLEQLLQ QPSSPSCVRQ KVLKCFSSWV QLEVPLQDCE ALIQAAFAAL 251 300 ENSTTRP00000001207/1-963 QDSELFDSSV EAIVNAISQP DAQ------- ---------- ---------- BACU000352/1-1025 QDSELFDSSV EAIVNAISQP DAQSPCQGHE TEAIPTVSRQ HPLELSLGCG ENSBTAP00000025142/1-963 QDSELFDSSV EAIVNAISQP DAQ------- ---------- ---------- bmy_20847T0/1-989 QDSELFDSSV EAIVNAISQP DAQ------- ---------- ---------- ENSP00000361418/1-963 QDSELFDSSV EAIVNAISQP DAQ------- ---------- ---------- 301 350 ENSTTRP00000001207/1-963 ---------- ---------- ---------- --RYVNTLLK LIPLVLGLQD BACU000352/1-1025 YPGMDVLSHQ NQDVEKANIL DWLPLVLLIL HLRYVNTLLK LIPLVLGLQD ENSBTAP00000025142/1-963 ---------- ---------- ---------- --RYVNTLLK LIPLVLGLQD bmy_20847T0/1-989 ---------- ---------- ---------- --RYVNTLLK LIPLVLGLQD ENSP00000361418/1-963 ---------- ---------- ---------- --RYVNTLLK LIPLVLGLQE 351 400 ENSTTRP00000001207/1-963 QLRQAVQNGD METSHGICRI AVALGENHSR ALLDQVEHWQ SFLALVNMIM BACU000352/1-1025 QLRQAVQNGD METSHGICRI AVALGENHSR ALLDQVEHWQ SFLALVNMIM ENSBTAP00000025142/1-963 QLRQAVQNGD METSHGICRI AVALGENHSR ALLDQVEHWQ SFLALVNMIM bmy_20847T0/1-989 QLRQAVQNGD METSHGICRI AVALGENHSR ALLDQVEHWQ SFLALVNMIM ENSP00000361418/1-963 QLRQAVQNGD METSHGICRI AVALGENHSR ALLDQVEHWQ SFLALVNMIM 401 450 ENSTTRP00000001207/1-963 FCTGIPGHFP VNETTSSLTL TFWYTLQDDI LSFEAEKQAV YQQVYRPVYF BACU000352/1-1025 FCTGIPGHFP VNETTSSLTL TFWYTLQDDI LSFEAEKQAV YQQVYRPVYF ENSBTAP00000025142/1-963 FCTGIPGHFP VNETTSSLTL TFWYTLQDDI LSFEAEKQAV YQQVYRPVYF bmy_20847T0/1-989 FCTGIPGHFP VNETTSSLTL TFWYTLQDDI LSFEAEKQAV YQQVYRPVYF ENSP00000361418/1-963 FCTGIPGHYP VNETTSSLTL TFWYTLQDDI LSFEAEKQAV YQQVYRPVYF 451 500 ENSTTRP00000001207/1-963 QLVDVLLHKA QFPSDEEYGF WSSDEKEQFR IYRVDISDTL MYVYEMLGAE BACU000352/1-1025 QLVDVLLHKA QFPSDEEYGF WSSDEKEQFR IYRVDISDTL MYVYEMLGAE ENSBTAP00000025142/1-963 QLVDVLLHKA QFPSDEEYGF WSSDEKEQFR IYRVDISDTL MYVYEMLGAE bmy_20847T0/1-989 QLVDVLLHKA QFPSDEEYGF WSSDEKEQFR IYRVDISDTL MYVYEMLGAE ENSP00000361418/1-963 QLVDVLLHKA QFPSDEEYGF WSSDEKEQFR IYRVDISDTL MYVYEMLGAE 501 550 ENSTTRP00000001207/1-963 LLSNLYDKLG RLLTSSEEPY SWQHTEALLY GFQSIAETID VNYSDVVPGL BACU000352/1-1025 LLSNLYDKLG RLLTSSEEPY SWQHTEALLY GFQSIAETID VNYSDVVPGL ENSBTAP00000025142/1-963 LLSNLYDKLG RLLTSSEEPY SWQHTEALLY GFQSIAETID VNYSDVVPGL bmy_20847T0/1-989 LLSNLYDKLG RLLTSSEEPY SWQHTEALLY GFQSIAETID VNYSDVVPGL ENSP00000361418/1-963 LLSNLYDKLG RLLTSSEEPY SWQHTEALLY GFQSIAETID VNYSDVVPGL 551 600 ENSTTRP00000001207/1-963 IGLIPRISIS NVQLADTVMF TIGALSEWLA DHPVMINSVL PLVLHALGNP BACU000352/1-1025 IGLIPRISIS NVQLADTVMF TIGALSEWLA DHPVMINSVL PLVLHALGNP ENSBTAP00000025142/1-963 IGLIPRISIS NVQLADTVMF TIGALSEWLA DHPVMINSVL PLVLHALGNP bmy_20847T0/1-989 IGLIPRISIS NVQLADTVMF TIGALSEWLA DHPVMINSVL PLVLHALGNP ENSP00000361418/1-963 IGLIPRISIS NVQLADTVMF TIGALSEWLA DHPVMINSVL PLVLHALGNP 601 650 ENSTTRP00000001207/1-963 ELSISSVSTL KKICRECKYD LPPYAANIVA VSQDVLMKQI HKTSQCMWLM BACU000352/1-1025 ELSISSVSTL KKICRECKYD LPPYAANIVA VSQDVLMKQI HKTSQCMWLM ENSBTAP00000025142/1-963 ELSISSVSTL KKICRECKYD LPPYAANIVA VSQDVLMKQI HKTSQCMWLM bmy_20847T0/1-989 ELSISSVSTL KKICRECKYD LPPYAANIVA VSQDVLMKQI HKTSQCMWLM ENSP00000361418/1-963 ELSVSSVSTL KKICRECKYD LPPYAANIVA VSQDVLMKQI HKTSQCMWLM 651 700 ENSTTRP00000001207/1-963 QALGFLLSAL QVEEILKNLH SLISPYIQQL EKLAEEIPNP SNKLAIVHIL BACU000352/1-1025 QALGFLLSAL QVEEILKNLH SLISPYIQQL EKLAEEIPNP SNKLAIVHIL ENSBTAP00000025142/1-963 QALGFLLSAL QVEEILKNLH SLISPYIQQL EKLAEEIPNP SNKLAIVHIL bmy_20847T0/1-989 QALGFLLSAL QVEEILKNLH SLISPYIQQL EKLAEEIPNP SNKLAIVHIL ENSP00000361418/1-963 QALGFLLSAL QVEEILKNLH SLISPYIQQL EKLAEEIPNP SNKLAIVHIL 701 750 ENSTTRP00000001207/1-963 GLLSNLFTTL DVSHHEDDHE GSELRKLPVP QGPNPVVVVL QQVFQLIQKV BACU000352/1-1025 GLLSNLFTTL DISHHEDDHE GSELRKLPVP QGPNPVVVVL QQVFQLIQKV ENSBTAP00000025142/1-963 GLLSNLFTTL DVSHHEDDHE GSELRKLPVP QGPNPVVVVL QQVFQLIQKV bmy_20847T0/1-989 GLLSNLFTTL DISHHEDDHE GSELRKLPVP QGPNPVVVVL QQVFQLIQKV ENSP00000361418/1-963 GLLSNLFTTL DISHHEDDHE GPELRKLPVP QGPNPVVVVL QQVFQLIQKV 751 800 ENSTTRP00000001207/1-963 LSKWLNDAQV VEAVCAIFEK SVKTLLDDFA PMVPQLCEML GRMYSTIPQA BACU000352/1-1025 LSKWLNDAQV VEAVCAIFEK SVKTLLDDFA PMVPQLCEML GRMYSTIPQA ENSBTAP00000025142/1-963 LSKWLNDAQV VEAVCAIFEK SVKTLLDDFA PMVPQLCEML GRMYSTIPQA bmy_20847T0/1-989 LSKWLNDAQV VEAVCAIFEK SVKTLLDDFA PMVPQLCEML GRMYSTIPQA ENSP00000361418/1-963 LSKWLNDAQV VEAVCAIFEK SVKTLLDDFA PMVPQLCEML GRMYSTIPQA 801 850 ENSTTRP00000001207/1-963 SALDLTRQLV HIFAHEPAHF PPIEALFLLV TSVTLTLFQQ GPRDHPD--- BACU000352/1-1025 SALDLTRQLV HIFAHEPAHF PPIEALFLLV TSITLTLFQQ GEWGDGSWSW ENSBTAP00000025142/1-963 SALDLTRQLV HIFAHEPAHF PPIEALFLLV TSVTLTLFQQ GPRDHPD--- bmy_20847T0/1-989 SALDLTRQLV HIFAHEPAHF PPIEALFLLV TSITLTLFQQ GPRDHPD--- ENSP00000361418/1-963 SALDLTRQLV HIFAHEPAHF PPIEALFLLV TSVTLTLFQQ GPRDHPD--- 851 900 ENSTTRP00000001207/1-963 IVDSFMQLLA Q--------- ---------- -------ALK RKPDLFLCER BACU000352/1-1025 LGWAYQLHLL Q--------- ---------- -------ALK RKPDLFLCER ENSBTAP00000025142/1-963 IVDSFMQLLA Q--------- ---------- -------ALK RKPDLFLCER bmy_20847T0/1-989 IVDSFMQLLA QGASTASVNQ SEVTAGNLEP AGGLALMALK RKPDLFLCER ENSP00000361418/1-963 IVDSFMQLLA Q--------- ---------- -------ALK RKPDLFLCER 901 950 ENSTTRP00000001207/1-963 LDVKAVFQCX XXXXXXXXXX XXXXSCGFFT ELLPRCGEVE PVGKVVQEDG BACU000352/1-1025 LDVKAVFQCA VLALKFPEAP TVKASCGFFT ELLPRCGEVE PVGKVVQEDG ENSBTAP00000025142/1-963 LDVKAVFQCA VLALKFPEAP TVKASCGFFT ELLPRCGEVE PVGKVVQEDG bmy_20847T0/1-989 LDVKAVFQCA VLALKFPEAP TVKASCGFFT ELLPRCGEVE PVGKVVQEDG ENSP00000361418/1-963 LDVKAVFQCA VLALKFPEAP TVKASCGFFT ELLPRCGEVE SVGKVVQEDG 951 1000 ENSTTRP00000001207/1-963 RMLLIAVLEA IGGQASRSLM DCFADILFAL NKHCFSLLSV WIKEALQSPG BACU000352/1-1025 RMLLIAVLEA IGGQASRSLM DCFADILFAL NKHCFSLLSV WIKEALQSPG ENSBTAP00000025142/1-963 RMLLIAVLEA IGGQASRSLM DCFADILFAL NKHCFSLLSV WIKEALQAPG bmy_20847T0/1-989 RMLLIAVLEA IGGQASRSLM DCFADILFAL NKHCFSLLSV WIKEALQSPG ENSP00000361418/1-963 RMLLIAVLEA IGGQASRSLM DCFADILFAL NKHCFSLLSM WIKEALQPPG 1001 1050 ENSTTRP00000001207/1-963 FPSARLSPEQ KDTFSQQILR ERVNKRRVKE MVKEFTLLCR GLHGTDYTAD BACU000352/1-1025 FPSARLSPEQ KDTFSQQILR ERVNKRRVKE MVKEFTLLCR GLHGTDYTAD ENSBTAP00000025142/1-963 FPSARLSPEQ KDTFSQQILR ERVNKRRVKE MVKEFTLLCR GLHGTDYTAD bmy_20847T0/1-989 FPSARLSPEQ KDTFSQQILR ERVNKRRVKE MVKEFTLLCR GLHGTDYTAD ENSP00000361418/1-963 FPSARLSPEQ KDTFSQQILR ERVNKRRVKE MVKEFTLLCR GLHGTDYTAD 1051 1100 ENSTTRP00000001207/1-963 Y BACU000352/1-1025 Y ENSBTAP00000025142/1-963 Y bmy_20847T0/1-989 Y ENSP00000361418/1-963 Y