KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:10 2014 Check: 00 .. Name: ENSP00000334958/1-1435 Len: 1626 Check: 1289 Weight: 1.00 Name: ENSBTAP00000025153/1-1430 Len: 1626 Check: 870 Weight: 1.00 Name: bmy_05257T0/1-1406 Len: 1626 Check: 3626 Weight: 1.00 Name: BACU018110/1-1288 Len: 1626 Check: 4016 Weight: 1.00 Name: ENSTTRP00000008721/1-1483 Len: 1626 Check: 7191 Weight: 1.00 // 1 50 ENSP00000334958/1-1435 ---------- ---------- ---------- --------MA QTPDGIS--- ENSBTAP00000025153/1-1430 ---------- ---------- ---------- --------MA QTPDGIS--- bmy_05257T0/1-1406 ---------- ---------- ---------- --------MA QTPDGISCEL BACU018110/1-1288 ---------- ---------- ---------- --------MA QTPDGIS--- ENSTTRP00000008721/1-1483 SAAGGAGGCS ARRGPRLPVS PRYRFSSELL GPPGPGRPMA QTPDGIS--- 51 100 ENSP00000334958/1-1435 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025153/1-1430 ---------- ---------- ---------- ---------- ---------- bmy_05257T0/1-1406 RGKRWPLSPS WLGGSRAAPE SRGPPSASWH RASGSLCSSG GLGGPNPLHS BACU018110/1-1288 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008721/1-1483 ---------- ---------- ---------- ---------- ---------- 101 150 ENSP00000334958/1-1435 ---------- ---------- -CELRGEITR FLWPKEVELL LKTWLPG-EG ENSBTAP00000025153/1-1430 ---------- ---------- -CELRGEITK FLWPKEAELL LKTWLPEREG bmy_05257T0/1-1406 FLAGPQMSPG PLARYRPCPA GCPSTGEITR FLWPKEAELL LKTWLPEREG BACU018110/1-1288 ---------- ---------- -CELRGEITR FLWPKEAELL LKTWLPEREG ENSTTRP00000008721/1-1483 ---------- ---------- -CELRGEITR FLWPKEAELL LKTWLPEREG 151 200 ENSP00000334958/1-1435 AVQNHVLALL RWRAYLLHTT CLPLRVDCTF SYLEVQAMAL QETPPQVTFE ENSBTAP00000025153/1-1430 AEQGHVLALL RWRAYLLH-T CLPLRVDCTF SYLEVQAMVL QETPPQVTFE bmy_05257T0/1-1406 AEQGHVLALL RWRAYLLH-T CLPLR----- ---------- ------VTFE BACU018110/1-1288 AEQGHVLALL RWRAYLLH-T CLPLRVDCTF SYLEVQAMAL QETPPQVTFE ENSTTRP00000008721/1-1483 AEQGHVLALL RWRAYLLH-T CLPLRVDCTF SYLEVQAMAL QETPPQVTFE 201 250 ENSP00000334958/1-1435 LESLRELVLE FPGVAALEQL AQHVAAAIKK VFPRSTLGKL FRRPTPASML ENSBTAP00000025153/1-1430 LESLPELVLE FTGVAALEQL AQHIAAAIRK VFPRSTLGKL FRRPTPPSML bmy_05257T0/1-1406 LESLPELVLE FPGVAALEQL AQHIAAAIRK VFPCSTLGKL FRRPTPPSML BACU018110/1-1288 LESLPELVLE FPGVAALEQL AQHIAAAIRK VFPCSTLGKL FRRPTPPSML ENSTTRP00000008721/1-1483 LESLPDLVLE FPGVAALEQL AQHIAAAIRK VFPCSTLGKL FRRPTPPSML 251 300 ENSP00000334958/1-1435 ARLERSSPSE STDPCSPCGG FLETYEALCD YNGFPFREEI QWDVDTIYHR ENSBTAP00000025153/1-1430 ARLEKSSSSE ATSPSSPCGG FSETYEALCD YNGFPFREEI QWDVDTIYHR bmy_05257T0/1-1406 ARLERSSPSE ATSPSSPCGG FSETYEALCD YNGFPFREEI QWDVDTIYHR BACU018110/1-1288 ARLERSSPSE ATSPSSPCGG FSETYEALCD YNGFPFREEI QWDVDTIYHR ENSTTRP00000008721/1-1483 ARLERSSPSE ATSPSSPCGG FSETYEALCD YNGFPFREEI QWDVDTIYHR 301 350 ENSP00000334958/1-1435 QGCRHFSLGD FSHLGSRDLA LSVAALSYNL WFRCLSCVDM KLSLEVSEQI ENSBTAP00000025153/1-1430 QGCRHFSLGD FSHLGSRDLA LSVAALSYNL WFRCLSCVDM KLSLEVSEQI bmy_05257T0/1-1406 QGCRHFSLGD FSHLGSRDLA LSVAALSYNL WFRCLSCVDM KLSLEVLEQI BACU018110/1-1288 QGCRHFSLGD FSHLGSRDLA LSVAALSYNL WFRCLSCVDM KLSLEVLEQI ENSTTRP00000008721/1-1483 QGCRHFSLGD FSHLGSRDLA LSVAALSYNL WFRCLSCVDM KLSLEVLEQI 351 400 ENSP00000334958/1-1435 LHMMSQSSHL EELVLETCSL RGDFVRRLAQ ALAGHSSSGL RELSLAGNLL ENSBTAP00000025153/1-1430 LHMMNQSSHL EELVLETCGL RGDFVRRLAQ ALAGHTSSGL RELSLAGNLL bmy_05257T0/1-1406 LHMMSQSSHL EELVLETCGL RGDFVRRLAQ ALAGHASSGL RELSLAGNVL BACU018110/1-1288 LHMMSQSSHL EELVLETCGL RGDFVRRLAQ ALAGHTSSGL RELSLAGNVL ENSTTRP00000008721/1-1483 LHMMSQSSHL EELVLETCGL RGDFVRRLAQ ALAGHTSSGL RELSLAGNVL 401 450 ENSP00000334958/1-1435 DDRGMTALSR HLERCPGALR RLSLAQTGLT PRGMRALGRA LATNAAFDST ENSBTAP00000025153/1-1430 DDRGVAALSR HLEKHPGALR RLSLAQTGLT PRGMRALGRA LASNSAFDSA bmy_05257T0/1-1406 DD-------- ---------- ---------- -RGMRALGRA LASNAAFDSA BACU018110/1-1288 DDRGVAALSR HLEHHPGALR RLTLAQTGLT PRGMRALGRA LASNAAFDSA ENSTTRP00000008721/1-1483 DDRGVAALSR HLEHHPGALR RLTLAQTGLT PRGMRALGRA LAFNAAFDSA 451 500 ENSP00000334958/1-1435 LTHLDLSGNP GALGASEDSG GLYSFLSRPN VLSFLNLAGT DTALDTVRGC ENSBTAP00000025153/1-1430 LTHLDLSGNP GALGASEDRG GLYSFLSRPN VLTFLNLAGT DTALDTVSGG bmy_05257T0/1-1406 LTHLDLSGNP GALGASEDNG GLYSFLSRPN VLTFLNLAGT DTALDTAQGS BACU018110/1-1288 LTHLDLSGNP GALGPSEDNG GLYSFLSRPN VLTFLNLAGT DTALDT---- ENSTTRP00000008721/1-1483 LTHLDLSGNP GALGASEDNG GLYSFLSRPN VLTFLNLAGT DTALDTVRGW 501 550 ENSP00000334958/1-1435 SVG------G WMTGRADWRA GRGGLGPPAG VANSLPPQLF AAVSRGCCTS ENSBTAP00000025153/1-1430 CVG------- -LGRPVAQGR LEAGLSPPAG VAHNLLSQLF AALSRGGCSS bmy_05257T0/1-1406 TGG------- ---------Q GGKGLSPPAS VAHTLLPQLF ASLSRGCCAS BACU018110/1-1288 ---------- ---------- ---------- --------LF ASLSRGCCAS ENSTTRP00000008721/1-1483 SVGGMICRAG KAGPRVDWRA GREGLSPPAS VAHTLLPQLF ASLSRGCCAS 551 600 ENSP00000334958/1-1435 LTHLDASRNV FSRTKSRAAP AALQLFLSRA RTLRHLGLAG CKLPPDALRA ENSBTAP00000025153/1-1430 LAHLDASRNV FSRTKSRAVP DALQLFLSRA GTLRHLGLAG CKLPPDALRA bmy_05257T0/1-1406 LTHLDASRNV FSRTKSRAAP DALQLFLSRA GTLRHLCLAG CKLPPDALRA BACU018110/1-1288 LTHLDASRNV FSRTKSRAAP DALQLFLSRA ATLRHLCLAG CKLPPDALRA ENSTTRP00000008721/1-1483 LTHLDASRNV FSRTKSRAAP DALQLFLSRA ETLRYLCLAG CKLPPDALRA 601 650 ENSP00000334958/1-1435 LLDGLALNTH LRDLHLDLSA CELRSAGAQV IQDLVCDAGA VSSLDLADNG ENSBTAP00000025153/1-1430 LLEGLALNTH LNDLHLDLSA CELRSAGAQV IQDLVCDAGA VSSLDLADNG bmy_05257T0/1-1406 LLEGLALNTH MDDLHLDLSA CELRSAGAQV IQDLVCDAGA VSSLDLADNG BACU018110/1-1288 LLEGLALNTH MDDLHLDLSA CELRSAGAQV IQDLVCDAGA VSSLDLADNG ENSTTRP00000008721/1-1483 LLEGLALNTH MDDLHLDLSA CELRSAGAQV IQDLVCDAGA VSSLDLADNG 651 700 ENSP00000334958/1-1435 FGSDMVTLVL AIGRSRSLRH VALGRNFNVR CKETLDDVLH RIVQLMQDDD ENSBTAP00000025153/1-1430 FGSDMVTLVL AIGRSRSLRH VALGRNFNVR CKETLDDVLH RIVQLMQDDD bmy_05257T0/1-1406 FGSDMVTLVL AIGRSRSLRH VALGRNFNVR CKETLDDVLH RIVQLMQDDD BACU018110/1-1288 FGSDMVTLVL AIGRSRSLRH VALGRNFNVR CKETLDDVLH RIVQLMQDDD ENSTTRP00000008721/1-1483 FGSDMVTLVL AIGRSRSLRH VALGRNFNVR CKETLDDVLH RIVQLMQDDD 701 750 ENSP00000334958/1-1435 CPLQSLSVAE SRLKLGASVL LRALATNPNL TALDISGNAM GDAGAKLLAK ENSBTAP00000025153/1-1430 CPLQSLSVAE SRLKLGAGVL LRALGTNPNL TALDISGNAM GDTGAKMLAK bmy_05257T0/1-1406 CPLQSLSVAE SRLKLGASVL LRALGANPNL TALDISGNAM GDTGAKMLAK BACU018110/1-1288 CPLQSLSVAE SRLKLGASVL LRALGANPNL TALDISGNAM GDTGAKMLAK ENSTTRP00000008721/1-1483 CPLQSLSVAE SRLKLGASVL LRALGANPNL TALDISGNAM GDTGAKMLAK 751 800 ENSP00000334958/1-1435 ALRVNSRLRS VVWDRNHTSA LGLLDVAQAL EQNHSLKAMP LPLNDVAQAQ ENSBTAP00000025153/1-1430 ALRVNTRLRS VVWDRNHTSA LGLLDVAQAL EQNHSLKAMP LPLNDVAQAQ bmy_05257T0/1-1406 ALRVNTRLRS VVWDRNHTSA VGLLDVAQAL EQNRSLKAMP LPLNDVAQAQ BACU018110/1-1288 ALRVNTRLRS VVWDRNHTSA VGLLDVAQAL EQNRSLKAMP LPLNDVAQAQ ENSTTRP00000008721/1-1483 ALRVNTRLRS VVWDRNHTSA LGLLDVAQAL EQNRSLKAMP LPLNDVAQAQ 801 850 ENSP00000334958/1-1435 RSRPELTARA VHQIQACLLR NNRADPASSD HTTRLQPLGL VSDPSEQ--- ENSBTAP00000025153/1-1430 RSRPELTARA VHQIQACLLR NNRTDHTSTD CTSCPKPLGL GSDPSEQ--- bmy_05257T0/1-1406 RSRPELTARA VHQIQACLLR NNRADHASTD CTSRSKPLGL GSDPSEQ--- BACU018110/1-1288 RSRPELTARA VYQIQACLLR NNRADHASTD CTSRSKPLGL GSDPSEQVRI ENSTTRP00000008721/1-1483 RSRPELTARA VHQIQACLLR NNRADHASTD CTSHPKPLGL GSDPSEQ--- 851 900 ENSP00000334958/1-1435 ---------- EVNELCQSVQ EHVELLGCGA GPQGEAAVRQ AEDAIQNANF ENSBTAP00000025153/1-1430 ---------- EVNELCQSVQ EHVELLGCGA GPQGEAAVHQ AEDAIQNANF bmy_05257T0/1-1406 ---------- EVNELCQSVQ EHVELLGCGA GPQGEAAVHQ AEDAIQNANF BACU018110/1-1288 PSLDVEHTQK EVNELCQSVQ EHVELLGCGA GPQGEAAVHQ AEEAIQNANF ENSTTRP00000008721/1-1483 ---------- EVNELCQSVQ EHVELLGCGA GPQGEAAVHQ AEDAIQNANF 901 950 ENSP00000334958/1-1435 SLSILPILYE AGSSPSHHWQ LGQKLEGLLR QVGEVCRQDI QDFTQATLDT ENSBTAP00000025153/1-1430 SLSILPILYE AGSSPSHQWQ LRQKLEGLLG QVGEVCRRDI QDFTQATLDT bmy_05257T0/1-1406 SLSILPILHE AGSSPSHQWQ LRQKLEGLLG QVGEVCRRDI QDFTQTTLDT BACU018110/1-1288 SLSILPILHE AGSSPSHQWQ LRQKLEGLLG QVGEVCRRDI QDFTQTTLDT ENSTTRP00000008721/1-1483 SLSILPILHE AGSSPSHQWQ LRQKLEGLLG QVGEVCRRDI QDFTQTTLDT 951 1000 ENSP00000334958/1-1435 ARSLCPQMLQ GSSWREQLEG VLAGSRGLPE LLPEQLLQDA FTRLRDMRLS ENSBTAP00000025153/1-1430 TRSLCPQTLQ GPRWREQLEG VLGGSRGLPE LLPEHLLQDA FTRLRNMRLS bmy_05257T0/1-1406 TRSLCPQMLQ GPRWREQLEG VLGGSRGLPE LLPEYLLQDA FTRLRDMRLS BACU018110/1-1288 TRSLCPQMLQ GPRWREQLEG VLGGSRGLPE LLPEYLLQDA FTRLRDMRLS ENSTTRP00000008721/1-1483 TRSLCPQMLQ GPRWREQLEG VLGGSGGLPE LLPEHLLQDA FTRLRDMRLS 1001 1050 ENSP00000334958/1-1435 ITGTLAESIV AQALAGLSAA RDQLVESLAQ QATVTMPPAL PAPDGGEPSL ENSBTAP00000025153/1-1430 VTGTLAESIV AQAVAGLSAA RDRLVESLAQ QATEAMPPVI PALDGDESSP bmy_05257T0/1-1406 VTGTLAESIV AQAVAGLSAA RDRLVESLAQ QATEAMPPVI PALDGGEPSP BACU018110/1-1288 VTGTLAESIV AQAVAGLSAA RDRLVESLAQ QATEAMPPVI RALDGGEPSP ENSTTRP00000008721/1-1483 VTGTLAESIV AQAVAGLSAA RDRLVESLAQ QATEATPPVI PALDGGEPSP 1051 1100 ENSP00000334958/1-1435 LEPGELEGLF FP-EEKEEEK EK---DDSPP QKWPELSHGL HLVPFIHSAA ENSBTAP00000025153/1-1430 LGPGELEGLF FP-EEKEKDD EE---DESPP QKWPESLHCL HLDSSTHSAA bmy_05257T0/1-1406 LGPGELEGLF FPEEEKEKEN EE---EQK-- ---------- ---------- BACU018110/1-1288 PGPGELEGLF FP-EEKEKEN EE---EQK-- ---------- ---------- ENSTTRP00000008721/1-1483 LGPGELEGLF FP-EEKEKEN EEEQKDDSPP QKWPESNRCL HLVPSTHSAA 1101 1150 ENSP00000334958/1-1435 EEAEPEPELA APGEDAEPQA GPSARGSPSP AAPGPPAGPL PRMDLPLAGQ ENSBTAP00000025153/1-1430 EELEPEPELA APGEDAEPQA GPSARGSPSP AAPGPPAGPL PRMDLPPSGQ bmy_05257T0/1-1406 ---------- ---------- ---------- ---------- ---------- BACU018110/1-1288 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008721/1-1483 EEPEPEPELA APGEDAEPQA GPSARGSPSP AAPGPPAGPL PRMDLPPAGQ 1151 1200 ENSP00000334958/1-1435 PLRHPTRARP RPRRQHHHRP PPGGPQVPPA LPQEGNGLSA RVDEGVEEFF ENSBTAP00000025153/1-1430 PLRHPTRTRP RPRRQHHHRP PPGGPQVPPA LPQEGNGLSA RVDEGVEEFF bmy_05257T0/1-1406 ---------- ---------- ------VPPA LPQEGNGLSA RVDEGVEEFF BACU018110/1-1288 ---------- ---------- ------VPPA LPQEGNGLSA RVDEGVEEFF ENSTTRP00000008721/1-1483 PLRHPTRARP RPRRQHHHRP PPGGPQVPPA LPQEGNGLSA RVDEGVEEFF 1201 1250 ENSP00000334958/1-1435 SKRLIQQDRL WAPEEDPATE GGATPVPRTL RKKLGTLFAF KKPRSTRGPR ENSBTAP00000025153/1-1430 SKRLIHQDRL WAPEEDPAAE GGTTPVPRTL RKKLGTLFAF KKPRSTRGSR bmy_05257T0/1-1406 SKRLIHQDRL WAPEEDPAAE GGTTPVPRTL RKKLGTLFAF KKPRSTRGSR BACU018110/1-1288 SKRLIHQDRL WAPEEDPAAE GGTTPVPRTL RKKLGTLFAF KKPRSTRGSR ENSTTRP00000008721/1-1483 SKRLIHQDRL WAPEEDPAAE GGTTPVPRTL RKKLGTLFAF KKPRSTRASR 1251 1300 ENSP00000334958/1-1435 TDLETSPGAA PRTRKTTFGD LLRPPTRPSR GEE-LGGAEG DTSSPDPAGR ENSBTAP00000025153/1-1430 PDLETSPGAA PRSRKTTLGD LLRPPARPGR GEEPAAGAEG GTSSPDPTRR bmy_05257T0/1-1406 PDLETSPGAA PRSRKTTLGD LLRPPARPGR GEE-AGGAEG GTSSPDPTRR BACU018110/1-1288 PDLETSPGAA PRSRKTTLGD LLRPPARPGR GEE-AGGAEG GTSSPDPTRR ENSTTRP00000008721/1-1483 PDLETSPGAA PRSRKTTLGD LLRPPARPGR GEE-AGGAEG GTSSPDPTRR 1301 1350 ENSP00000334958/1-1435 SRPRYTRDSK AYSMILLPAE EEA-TLGARP DKRRPLERGE TELAPSFEQR ENSBTAP00000025153/1-1430 SRPRYTRESK AYSLILLPAE EEE-TVGARP DKRRPLERGD TELAPSFEQR bmy_05257T0/1-1406 SRPRYTRESK AYSMILLPAE EEETTLGARP DKQQPLERGD TELAPTFEQR BACU018110/1-1288 SRPRYTRESK AYSMILLPAE EEETTLGARP DKQQPLERGD TELAPTFEQR ENSTTRP00000008721/1-1483 SRPRYTRESK AYSMILLPAE EEETTLGARP DKQQPLERGD TELAPTFEQR 1351 1400 ENSP00000334958/1-1435 VQVMLQRIGV SRGSGGAEGK RKQSKDGEIK KAGSDGDIMD SSTEAPPISI ENSBTAP00000025153/1-1430 VQVMLQRIGV SRGSGSAEGK RKQSKDGEIK KAGSDGDIMD SSTEAPPISI bmy_05257T0/1-1406 VQVMLQRIGV SRGSGSAEGK RKQSKDGEIK KAGSDGDIMD SSTEAPPISI BACU018110/1-1288 VQVMLQRIGV SRGSGSAEGK RKQSKDGEIK KAGSDGDIMD SSTEAPPISI ENSTTRP00000008721/1-1483 VQVMLQRIGV SRGSGSAEGK RKQSKDGEIK KAGSDGDIMD SSTEAPPISI 1401 1450 ENSP00000334958/1-1435 KSRTHSVSAD PSCRPGPGSQ GPESATWKTL GQQLNAELRS RGWGQQDGPG ENSBTAP00000025153/1-1430 KSRTHSVSAD PSCRPGPGGQ GPESATWKTL GQQLNAELRG RGWGQQDGPG bmy_05257T0/1-1406 KSRTHSVSAD PSCRPGPGGQ GPESATWKTL GQQLNAELRG RGWGQQDGPG BACU018110/1-1288 KSRTHSVSAD PSCRPGPGGQ GPESATWKTL GQQLNAELRG RGWGQQDGPG ENSTTRP00000008721/1-1483 KSRTHSVSAD PSCRPGPGGQ GPESATWKTL GQQLNAELRG RGWGQQDGPG 1451 1500 ENSP00000334958/1-1435 PPSPGQSPSP CRTSPSPDSL GLPEDP---- ---CLGPR-- ---NEDGQLR ENSBTAP00000025153/1-1430 PPSPCPSPSP RRSSPSPDSL GLPEDP---- ---CLGSR-- ---NEDGWLR bmy_05257T0/1-1406 PPSPCPSPSP RRASPSPDSL GLPVGGKGWS GGSCWDHTLI PWPPPDGQLR BACU018110/1-1288 PPSPCPSPSP RRASPSPDSL GLPEDS---- ---CLGSR-- ---NE----- ENSTTRP00000008721/1-1483 PPSPCPSPSL RRASPSPDSL GLPEDS---- ---CLGSR-- ---NEDGQLR 1501 1550 ENSP00000334958/1-1435 PRPLSAGRRA VSVHEDQLQA P--------- ---------- ---------- ENSBTAP00000025153/1-1430 PQPRLAGRRA VSVHEDQLQA P--------- ---------- ---------- bmy_05257T0/1-1406 PRPLLAGRRA VSVHEDQLQA PVGSQRPGAR VCEALPTSPG STSTRATSAR BACU018110/1-1288 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000008721/1-1483 PRPLLAGRRA VSVHEDQLQA P--------- ---------- ---------- 1551 1600 ENSP00000334958/1-1435 ---------- --AERPLRLQ RSPVLKRRPK LEAPPSPSLG SGLGTEPLPP ENSBTAP00000025153/1-1430 ---------- --ADRPLRLQ RSPVLKRRPK LEAPPSPSIG SGLEAEPLPT bmy_05257T0/1-1406 GGRMPGKGEA LKAKRPLRLQ RSPVLKRRPK LETPPSPSIG SGLGAEPLPP BACU018110/1-1288 ---------- ---ERPLRLQ RSPVLKRRPK LETPPSPSIG SGLGAEPLPP ENSTTRP00000008721/1-1483 ---------- --VERPRRLQ RSPVLKRRPK LEASPSPSIG SGLGAEPLPP 1601 1650 ENSP00000334958/1-1435 QPTEPSSPER SPPSPATDQR GGGPNP ENSBTAP00000025153/1-1430 QSTEPS---- SPPSPTTNQR GGGPNP bmy_05257T0/1-1406 QSTEPSGPER SPPSPATDQR GSGPNP BACU018110/1-1288 QSTEPSGPER SPSSPATDQR GSGPNP ENSTTRP00000008721/1-1483 QSTEPSDPER SPPSPATDQR GGGPNP