KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:25:13 2014 Check: 00 ..
Name: ENSTTRP00000008727/1-533 Len: 577 Check: 9645 Weight: 1.00
Name: ENSP00000377496/1-544 Len: 577 Check: 7957 Weight: 1.00
Name: ENSBTAP00000025159/1-486 Len: 577 Check: 202 Weight: 1.00
Name: bmy_05256T0/1-516 Len: 577 Check: 7803 Weight: 1.00
Name: BACU019549/1-511 Len: 577 Check: 9690 Weight: 1.00
//
1 50
ENSTTRP00000008727/1-533 TPGRCWRDAR VRVSRTAYST NTG-----LQ TSSRIGRARA HARDAHGRDL
ENSP00000377496/1-544 MPGRCQSDAA MRVNGPASRA PAGWTSGSLH TGPRAGRPRA QARGVRGRGL
ENSBTAP00000025159/1-486 ---------- ---------- ---------- ---------- ----------
bmy_05256T0/1-516 ---------- ---------- ---------- TSSRIGRARA HARARSWAGP
BACU019549/1-511 ---------- ---------T NTG-----LQ TSSRIGRARA HARAH-GRDL
51 100
ENSTTRP00000008727/1-533 DLRSRPA-AA FPLPRRGGAA ALAGNAVPLR LA----TAAG MASLGSLVLR
ENSP00000377496/1-544 LLRPRPA-KE LPLPRKGGAW APAGNPGPLH PL---GVAVG MAGSGRLVLR
ENSBTAP00000025159/1-486 DVRRFPS--- ------SGEA GPRRTGKTRA RGYLRSPAAG MASFGGLVLR
bmy_05256T0/1-516 RPQVPPSRRT FPLPRRGGAA APAENAGQRC SAGYRGGNGR LGESGPAALD
BACU019549/1-511 DLRSRPA--A FPLPRRGGAA APAENAGQAR LA----TAGG MAGLGSLVLR
101 150
ENSTTRP00000008727/1-533 PWIRELVLGS EALSSPRA-- GQLLKVLQEA EA--PGPSRA PDTSEG-ATL
ENSP00000377496/1-544 PWIRELILGS ETPSSPRA-- GQLLEVLQDA EAAVAGPSHA PDTSDVGATL
ENSBTAP00000025159/1-486 PWIRELVLGS DALSSPRA-- GQLLKVLQEA KA--QSPSGA PDPPDAEAML
bmy_05256T0/1-516 SRAGSRVRGT LKPAGGAAAQ GRRRQVLQEA ET--PGPSRA PDTSEG-ATL
BACU019549/1-511 PWIRELVLGS EALSSPRA-- GQLLKVLQEA EA--PGPSRA PDTSEG-ATL
151 200
ENSTTRP00000008727/1-533 LVSDGTHSIR CLVTREALNA SDWEEKEFGF RGAEGRLLLL QNCGVRVQVA
ENSP00000377496/1-544 LVSDGTHSVR CLVTREALDT SDWEEKEFGF RGTEGRLLLL QDCGVHVQVA
ENSBTAP00000025159/1-486 LVSDGTHSIR CLVTGEALNA SDWEEKEFGF RGTEGRILLL RDCKVSVQVA
bmy_05256T0/1-516 LVSDGTHSIR CLVTREALNA SDWEEKEFGF RGAEGRLLLL QNCGVRVQVA
BACU019549/1-511 LVSDGTHSIR CLVTREALNT SDWEEKEFGF RGAEGRLLLL QNCGVRVQVA
201 250
ENSTTRP00000008727/1-533 EAGAHAEFYL QVDRFSLLPT EQPRERVTGC NQDPDVRKKL YDCLQEHLSE
ENSP00000377496/1-544 EGGAPAEFYL QVDRFSLLPT EQPRLRVPGC NQDLDVQKKL YDCLEEHLSE
ENSBTAP00000025159/1-486 QGDTPAEFYL QVDRFALLPT EQPREQVTGC NEDPDVRKKL CDCLEEHLSE
bmy_05256T0/1-516 EGGAPAEFYL QVDRFSLLPT EQPRERVTGC NQDPDVRKKL YDCLEEHLSE
BACU019549/1-511 EGGAPAEFYL QVDRFSLLPT EQPRERVTGC NQDPDVRKKL YDCLEEHLSE
251 300
ENSTTRP00000008727/1-533 STSPSAGLSL SQLLDEVEED QEHRGALVSL AESCLMLSGP CTAPPLTRWA
ENSP00000377496/1-544 STSSNAGLSL SQLLDEMRED QEHQGALVCL AESCLTLEGP CTAPPVTHWA
ENSBTAP00000025159/1-486 STSSNTGLSL SQLLNEVEVD QEHQKALVRL AESCLILAGP DTAAPITPWA
bmy_05256T0/1-516 STSPSAGLSL SQLLDEVEED QEHRGALVSL AESCLMLAGP CTAPPLTRWA
BACU019549/1-511 STSPSAGLSL SQLLDEVEED QEHRGALVSL AESCLMLAGP CTATPLTRWA
301 350
ENSTTRP00000008727/1-533 AR--CIAK-- ---------- ---------- ----XXXXXX XXXXXXXXXX
ENSP00000377496/1-544 ASR-CKAT-- ---------- ---------- ----GEAVYT VPSSMLCISE
ENSBTAP00000025159/1-486 ASR-CRAT-- ---------- ---------- ----GEAVYT VPSLRLHISE
bmy_05256T0/1-516 ASR-CRAT-- ---------- ---------- ----GEAVYS VPSLWLHISE
BACU019549/1-511 ASRCCRATVS LGLLLGHVGV GSWARAKLNV LILQGEAVYS VPSLWLHISE
351 400
ENSTTRP00000008727/1-533 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSP00000377496/1-544 NDQLILSSLG PCQRTQGPEL PPPDPALQDL SLTLIASPPS SPSSSGTPAL
ENSBTAP00000025159/1-486 NDQQILSSLG PTQRVQGPER SPSHLALQDL SLSLISSPPS SPSSSGTPAI
bmy_05256T0/1-516 NDQQILSSLG PGQRAQGPEL PPPHPALQDL SLTLISSPPS SPSSSGTPAL
BACU019549/1-511 NDQQILSSLG PGQRAQ---- ---------- ---------- -----GTPAL
401 450
ENSTTRP00000008727/1-533 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX
ENSP00000377496/1-544 PGHMSSEESG TSISLLPALS LAAPDPGQRS SSQPSPAICS APATLTPRSP
ENSBTAP00000025159/1-486 PSHLLSKENS ASVSLLPPLP LAAPDPVQKG SSQPLSTICS AHGSLPPGSP
bmy_05256T0/1-516 PSHMLSEESG ASISLLPALP LAAPDPAQKG SSQPLSAICS AHGPLPPSSP
BACU019549/1-511 PSHVLSEESG ASISLLPALP VAAPDPAQKG SSQPLSAICS AHGPLPPSSP
451 500
ENSTTRP00000008727/1-533 XXXXXXXXXX XXXXXXLSPL GHAPSLHQAP VTMAQRPSLE YKKL-ELPPK
ENSP00000377496/1-544 HASRTPSSPL QSCTPSLSPR SHVPSPHQAL VTRPQKPSLE FKEFVGLPCK
ENSBTAP00000025159/1-486 HPSSIPNTPL LSCTPSLSRL GHAPSIHQAH VSRAQKPSLE FKEL-GLPPK
bmy_05256T0/1-516 HPSHVPNSPP LSCTPSLSPL GHVPSLHQAH VTMAQRPSLE FKEL-GLPPK
BACU019549/1-511 HPSPGPNSPP LSCTPSLSPL GHVPSLHQAH VTMTQRPSLE FKEL-GLPPK
501 550
ENSTTRP00000008727/1-533 TRQPSPRTRT TKEALESSSV WDPAKTHRDG SAFQYEYEPP CPSLCAQVQA
ENSP00000377496/1-544 NRPPFPRTGA TRGAQEPCSV WEPPKRHRDG SAFQYEYEPP CTSLCARVQA
ENSBTAP00000025159/1-486 TLHHSPRTRT TKGALESSCV WDPPERHRDG SAFQYEYRPP CPSLCAQVQA
bmy_05256T0/1-516 TWQHSPRTRT TKGTLESSPV WDPRKRHLDG SAFQYEYEPP CPSLCAQVQA
BACU019549/1-511 TGQHSPRTRT TKGALESSPV WDPRKRHRDG SAFQYEYEPP CPSLCAQVQA
551 600
ENSTTRP00000008727/1-533 ARLPPQLVAW ALHFLMEPQP EAELTQV
ENSP00000377496/1-544 VRLPPQLMAW ALHFLMDAQP GSEPTPM
ENSBTAP00000025159/1-486 ARLPPQLVAW ALHFLMEPQP DSELTQM
bmy_05256T0/1-516 ARLPPQLVAW ALHFLMEPQP EAELTQV
BACU019549/1-511 ARLPPQLVAW ALHFLMEPQP EAELTQV