KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:16 2014 Check: 00 .. Name: ENSTTRP00000016438/1-1148 Len: 1184 Check: 7287 Weight: 1.00 Name: ENSP00000378857/1-1151 Len: 1184 Check: 713 Weight: 1.00 Name: ENSBTAP00000025167/1-1124 Len: 1184 Check: 1305 Weight: 1.00 Name: bmy_05990T0/1-1177 Len: 1184 Check: 9483 Weight: 1.00 Name: BACU002411/1-1120 Len: 1184 Check: 264 Weight: 1.00 // 1 50 ENSTTRP00000016438/1-1148 ---------- ---------- ---------S CSEAREGSSR ELGSLLDRGS ENSP00000378857/1-1151 ---------- ---------- -------MGS AARWEGSFSR EFSSLLSRGC ENSBTAP00000025167/1-1124 ---------- ---------- ---------- ---------- ---------- bmy_05990T0/1-1177 RRGAEDGRHW VSAAGAPASA TCCYGRCRAA ARRAGRLVSR ELSSLLDRGS BACU002411/1-1120 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000016438/1-1148 WSGSETDMDA HEDYVWPRAT SELILLPVTG LECVGERLLA GEGPDVLVYT ENSP00000378857/1-1151 LSTSRIDMDA LEDYVWPRAT SELILLPVTG LECVGDRLLA GEGPDVLVYS ENSBTAP00000025167/1-1124 -------MDA HEDYVWPRAT SELILLPVTG LECVGERLLA GEGPDVLVYT bmy_05990T0/1-1177 CSGSGTDMDA HEDYVWPRAT SELILLPVTG LECVGERLLA GEGPDVLVYT BACU002411/1-1120 -------MDA HEGYVWPRAT SELILLPVTG LECVGERLLA GEGPDVLVYT 101 150 ENSTTRP00000016438/1-1148 LDFGGHLRMM KRVQNLLGHY LIHGFRVRPE PNGDLDSEAM VAVFGSKGLR ENSP00000378857/1-1151 LDFGGHLRMI KRVQNLLGHY LIHGFRVRPE PNGDLDLEAM VAVFGSKGLR ENSBTAP00000025167/1-1124 LDFGGHLRMM KRVQNLLGHY LIHGFRVRPE PNGDLDSEVM VAAFGSKGLR bmy_05990T0/1-1177 LDFGGHLRMM KRVQNLLGHY LIHGFRVRPE PNGDLDSEAM VAVFGSKGLR BACU002411/1-1120 LDFGGHLRMM KRVQNLLGHY LIHGFRVRPE PNGDLDSEAM VAVFGSKGLR 151 200 ENSTTRP00000016438/1-1148 IVKIGWGQGR FRELWRSGLW NMSDWIWDAR WLEGNMALAL GHNSVVLYDP ENSP00000378857/1-1151 VVKISWGQGH FWELWRSGLW NMSDWIWDAR WLEGNIALAL GHNSVVLYDP ENSBTAP00000025167/1-1124 IVKISWGQGR FRELWRSGLW NMSDWIWDAR WLEGNIALAL GHNSVVLYDP bmy_05990T0/1-1177 IVKIGWGQGR FRELWRSGLW NMSDWIWDAR WLEGNMALAL GHNSVVLYDP BACU002411/1-1120 IVKIGWGQGR FRELWRSGLW NMSDWIWDAR WLEGNMALAL GHNSVVLYDP 201 250 ENSTTRP00000016438/1-1148 VVGCMLQDVP CTDRCTLSSA CLIGDTWKEL TIVAGAVSNQ LLVWYPAAAL ENSP00000378857/1-1151 VVGCILQEVP CTDRCTLSSA CLIGDAWKEL TIVAGAVSNQ LLVWYPATAL ENSBTAP00000025167/1-1124 VVGCSLQDVP CTDRCTLSSA CLIGDTWKEL TVVAGAVSNQ LLVWYPAAAL bmy_05990T0/1-1177 VVGCILQDVP CTDRCTLSSA CLIGDTWKEL TIVAGAVSNQ LLVWYPAAAL BACU002411/1-1120 VVGCILQDVP CTDRCTLSSA CLIGDTWKEL TIVAGAVSNQ LLVWYPAAAL 251 300 ENSTTRP00000016438/1-1148 IDNKPVAPDR RVSGHVGVIF SMSYLESKGL LATASEDRSV RIWKVGDLRV ENSP00000378857/1-1151 ADNKPVAPDR RISGHVGIIF SMSYLESKGL LATASEDRSV RIWKVGDLRV ENSBTAP00000025167/1-1124 TDDKPVVPDR RVSGHVGVIF SMSYLESKGL LATASEDRSV RIWKVGDLRV bmy_05990T0/1-1177 IDNKPVAPDR RVSGHVGVIF SMSYLESKGL LATASEDRSV RIWKVGDLRV BACU002411/1-1120 IDNKPVAPDR RVSGHVGVIF SMSYLESKGL LATASEDRSV RIWKVGDLRV 301 350 ENSTTRP00000016438/1-1148 PGGRVQNIGH CFGHSARVWQ VKLLENYLIS AGEDCVCLVW SHEGEILQAF ENSP00000378857/1-1151 PGGRVQNIGH CFGHSARVWQ VKLLENYLIS AGEDCVCLVW SHEGEILQAF ENSBTAP00000025167/1-1124 PGGRVQNIGH CFGHSARVWQ VKLLENYLIS AGEDCVCLVW SHEGEILQAF bmy_05990T0/1-1177 PGGRVQNIGH CFGHSARVWQ VKLLENYLIS AGEDCVCLVW SHEGEILQAF BACU002411/1-1120 PGGRVQNIGH CFGHSARVWQ VKLLENYLIS AGEDCVCLVW SHEGEILQAF 351 400 ENSTTRP00000016438/1-1148 RGHQGRGIRA IAAHERQAWV ITGGDDSGIR LWHLMGRGYP GSGVSTLCFK ENSP00000378857/1-1151 RGHQGRGIRA IAAHERQAWV ITGGDDSGIR LWHLVGRGYR GLGVSALCFK ENSBTAP00000025167/1-1124 RGHQGRGIRA LAAHERQAWV ITGGDDSGIR LWHLVGRGHP GSGVFALSFK bmy_05990T0/1-1177 RGHQGRGIRA IAAHERQAWV ITGGDDSGIR LWHLVGRGYP GSGVSALCFK BACU002411/1-1120 RGHQGRGIRA IAAHERQAWV ITGGDDSGIR LWHLLGRGYP GSGVSALCFK 401 450 ENSTTRP00000016438/1-1148 SHSRPGALKA VTLAGSWRVL AVTDTGALYL YDLEVKCWEQ LLEDKCFQSY ENSP00000378857/1-1151 SRSRPGTLKA VTLAGSWRLL AVTDTGALYL YDVEVKCWEQ LLEDKHFQSY ENSBTAP00000025167/1-1124 SHSRPGVLKA VTLAGSWRVL AVTDAGALYL YDLEVKCWEQ LLEDKRFQSY bmy_05990T0/1-1177 SRSRPGALKA VTLAGSWRVL AVTDTGALYL YDLEVKCWEQ LLEDKCFQSY BACU002411/1-1120 SRSRPGALKA VTLAGSWRVL AVTDTGALYL YDLEVKCWEQ LLEDKCFQSY 451 500 ENSTTRP00000016438/1-1148 CLLEAAPGPE GFGLCAMANG EGHVKVVPIN TPTAAVDLTL FHGKVHSLSW ENSP00000378857/1-1151 CLLEAAPGPE GFGLCAMANG EGRVKVVPIN TPTAAVDQTL FPGKVHSLSW ENSBTAP00000025167/1-1124 CLLEAAPGPE GFGLCALANG EGRVKVVPIN TPTAAVDLTL FPGKVHSLSW bmy_05990T0/1-1177 CLLEAAPGPE GFGLCAMANG EGHVKVVPIN TPTAAVDLTL FHGKVHSLSW BACU002411/1-1120 CLLEAAPGPE GFGLCAMANG EGHVKVVPIN TPTAAVDLTL FHGKVHSLSW 501 550 ENSTTRP00000016438/1-1148 ALRGYEELLL LASGPGGVVA CLEISAAPSG KAIFVKERCR YLLPPSKQRW ENSP00000378857/1-1151 ALRGYEELLL LASGPGGVVA CLEISAAPSG KAIFVKERCR YLLPPSKQRW ENSBTAP00000025167/1-1124 ALRGYEELLL LASGPGGVVA CLEISAAPSG KAIFVKERCR YLLPPSKQRW bmy_05990T0/1-1177 ALRGYEELLL LASGPGGVVA CLEISAAPSG KAIFVKERCR YLLPPSKQRW BACU002411/1-1120 ALRGYEELLL LASGPGGVVA CLEISAAPSG KAIFVKERCR YLLPPSKQRW 551 600 ENSTTRP00000016438/1-1148 HTCSAFLHPG DFLVCGDRRG SVLLXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000378857/1-1151 HTCSAFLPPG DFLVCGDRRG SVLLFPSRPG LLKDPGVGGK ARAGAGAPVV ENSBTAP00000025167/1-1124 HTCSAFLPPG DFLVCGDRRG SVLLYPSRPD LLKDLGVVSK VGAITSAPGA bmy_05990T0/1-1177 HTCSAFLPPG DFLVCGDRRG SVLLFPSRPD LLKDLGVGGK VGAGTGALGT BACU002411/1-1120 HTCSAFLPPG DFLVCGDRRG SVLLFPSRPD LLKDLGVGGK VGAGTGALGT 601 650 ENSTTRP00000016438/1-1148 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000378857/1-1151 GSGSSGGGNA FTGLGPVSTL PSLHGKQGVT SVTCHGGYVY TTGRDGAYYQ ENSBTAP00000025167/1-1124 GSGEG--EPS LAEWGPMSTL PSLHGKQGVT SVTCHGGYVY TTGRDGSYYQ bmy_05990T0/1-1177 GSGSGGSENA LAEWGPVSTL PSLHGKQGVT SVTCHGGYVY TTGRDGAYYQ BACU002411/1-1120 GSGSGGSENA LAEWGPVSTL PSLHGKQGVT SVTCHGGYVY TTGRDGAYYQ 651 700 ENSTTRP00000016438/1-1148 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000378857/1-1151 LFVRDGQLQP VLRQKSCRGM NWLAGLRIVP DGSMVILGFH ANEFVVWNPR ENSBTAP00000025167/1-1124 LFVRGGQLQP VLRQKPCRGM NWVAGVRMVA DGNMVILGFH ANEFVVWSPR bmy_05990T0/1-1177 LLVRGGQLQP VLRQKSCRGM NWVAGLRMVA DGSMVILGFH ANEFVVWSPR BACU002411/1-1120 LLVRGGQLQP VLRQKSCRGM NWVAGLRMVA DGSMVILGFH ANEFVVWSPR 701 750 ENSTTRP00000016438/1-1148 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000378857/1-1151 SHEKLHIVNC GGGHRSWAFS DTEAAMAFAY LKDGDVMLYR ALGGCTRPHV ENSBTAP00000025167/1-1124 SHEKLHIINC GGGHRSWAFS DTEAAMAFAY LKDGDVMLYR ALGGCTRPHV bmy_05990T0/1-1177 SHEKLHIINC GGGHRSWAFS DTEAAMAFAF LKDGDVMLYR ALGGCTRPHV BACU002411/1-1120 SHEKLHIINC GGGHRSWAFS DTEAAMAFAY LKDGDVMLYR ALGGCTRPHV 751 800 ENSTTRP00000016438/1-1148 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXX--- ---XXXXXXX ENSP00000378857/1-1151 ILREGLHGRE ITCVKRVGTI TLGPEYGVPS FMQPDDL--- ---EPGSEGP ENSBTAP00000025167/1-1124 ILRESLHGRE ITCVKRVGSI TLGPESGVPS FLQPDHLEPG EPVEPGSEGP bmy_05990T0/1-1177 ILRESLHGRE ITCVKRVGTI TLGPEFGVPS FMQPDHL--- ---EPTSEGP BACU002411/1-1120 ILRESLHGRE ITCVKRVGTI TLGPEFGVPS LMQPDHL--- ---EPTSEGP 801 850 ENSTTRP00000016438/1-1148 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000378857/1-1151 DLTDIVITCS EDTTVCVLAL PTTTGSAHAL TAVCNHISSV RAVAVWGIGT ENSBTAP00000025167/1-1124 GLIDIVITCS EDTTVCVLAL PTATGSAHAL TAVCNHISSV RAVAVWGVGT bmy_05990T0/1-1177 GLIDIVITCS EDTTVCILAL PTATGSAHAL TAVCNHISSV RAVAVWGTGT BACU002411/1-1120 GLIDIVITCS EDTTVCILAL PTATGSAHAL TAVCNHISSV RAVAVWGTGT 851 900 ENSTTRP00000016438/1-1148 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000378857/1-1151 PGGPQDPQPG LTAHVVSAGG RAEMHCFSIM VTPDPSTPSR LACHVMHLSS ENSBTAP00000025167/1-1124 PGGPQDPQPG LTAHVVSAGG RAEMHCFTIM VTPDPSPPSR LACHVMHLSS bmy_05990T0/1-1177 PGGPQDPGPG LTAHVVSAGG RAEMHCFTIM VTPDPSTPSR LACHVMHLSS BACU002411/1-1120 PGGPQDPRPG LTAHVVSAGG RAEMHCFTIM VTPDPSTPSR LACHVMHLSS 901 950 ENSTTRP00000016438/1-1148 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000378857/1-1151 HRLDEYWDRQ RNRHRMVKVD PETRYMSLAV CELDQPGLGP LVAAACSDGA ENSBTAP00000025167/1-1124 HRLDEYWDRQ RHRHRMIKVD PETRYMSLAV CELDRPGLGP LVAAACSDGA bmy_05990T0/1-1177 HRLDEYWDRQ RNRHRMIKVD PETRYMSLAV CELDRPGLGP LVAAACSDGA BACU002411/1-1120 HQLDEYWDRQ RNRHRMIKVD PETRYMSLAV CELDRPGLGP LVAAACSDGA 951 1000 ENSTTRP00000016438/1-1148 XXLFLLQDSG QRLQLLAETF HHKRCVLKVH SFTHEATNQR RRLFLCSAAT ENSP00000378857/1-1151 VRLFLLQDSG RILQLLAETF HHKRCVLKVH SFTHEAPNQR RRLLLCSAAT ENSBTAP00000025167/1-1124 VRLFLLQDSG RRLQLLAETS HHKRCVLKVH AFTHEAPNRR RRLFLCSAAT bmy_05990T0/1-1177 VRLFLLQDSG QRLQLLAETF HHKRCVLKVH SFTHEATNQR RRLFLCSAAT BACU002411/1-1120 VRLFLLQDSG QQLQLLAETF HHKRCVLKVH SFTHEATNQR RRLFLCSAAT 1001 1050 ENSTTRP00000016438/1-1148 DGSLAFWDLT TVLDHGSPAL EPPADPGLPY RLGSPCLTLQ AHSCGVNSLH ENSP00000378857/1-1151 DGSLAFWDLT TMLDHDSTVL EPPVDPGLPY RLGTPSLTLQ AHSCGINSLH ENSBTAP00000025167/1-1124 DGSLAFWDLT TMLDQDSPAL EAAADLGLPF QLGSPCLTVQ AHSCGVNSLH bmy_05990T0/1-1177 DGSLAFWDLS TVLDHGSPAL EPPADPGLPY RLGSPCLTLQ AHSCGVNSLH BACU002411/1-1120 DGSLAFWDLT TVLDHGSPAL EPPADPGLPY RLGSPCLTLQ AHSCGVNSLH 1051 1100 ENSTTRP00000016438/1-1148 TLPTREG-HL VASGSEDGSL HVFVLTVEVP ELEEAVGGAE LVPQLQVLEE ENSP00000378857/1-1151 TLPTREGHHL VASGSEDGSL HVFVLAVEML QLEEAVGEAG LVPQLRVLEE ENSBTAP00000025167/1-1124 TLPTREG-HL VASGSEDGSL HVFVLAVEMP ELEEAVGGAE LLPQLQVLEE bmy_05990T0/1-1177 TLPTREG-HL VASGSEDGSL HVFVLTVEVP ELEEAVGGAE LVPQLQVLEE BACU002411/1-1120 TLPTREG-HL VASGSEDGSL HVFVLTVEVP ELEEAVGGAE LVPQLQVLEE 1101 1150 ENSTTRP00000016438/1-1148 YSLPCAHAAH VTGLKILSPS LMVSASIDQR LTFWRLGHGE PTFMNSTVYH ENSP00000378857/1-1151 YSVPCAHAAH VTGLKILSPS IMVSASIDQR LTFWRLGHGE PTFMNSTVFH ENSBTAP00000025167/1-1124 YSVPCAHAAH VTGLKILSRS LMVSASIDQR LTFWRLGHGE PTFMNSTVYH bmy_05990T0/1-1177 YSLPCAHAAH VTGLKILSPS LMVSASIDQR LTFWRLGHGE PTFMNSTVYH BACU002411/1-1120 YSLPCAHAAH VTGLKILSPS LMVSASIDQR LTFWRLGHGE PTFMNSTVYH 1151 1200 ENSTTRP00000016438/1-1148 VADVADMDCW PVSPEFGHRC ALGGQGLEVY NWYD ENSP00000378857/1-1151 VPDVADMDCW PVSPEFGHRC ALGGQGLEVY NWYD ENSBTAP00000025167/1-1124 VADVADMDCW PVSPEFGHRC ALGGQGLEVY NWYD bmy_05990T0/1-1177 VADVADMDCW PVSPEFGHRC ALGGQGLEVY NWYD BACU002411/1-1120 VADVADMDCW PVSPEFGHRC ALGGQGLEVY NWYD