KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:16 2014 Check: 00 .. Name: ENSBTAP00000025168/1-478 Len: 543 Check: 7964 Weight: 1.00 Name: ENSP00000344989/1-543 Len: 543 Check: 9444 Weight: 1.00 Name: ENSTTRP00000016439/1-535 Len: 543 Check: 9840 Weight: 1.00 Name: bmy_05991T0/1-502 Len: 543 Check: 1004 Weight: 1.00 Name: BACU020569/1-539 Len: 543 Check: 7165 Weight: 1.00 // 1 50 ENSBTAP00000025168/1-478 PVAMRLGVEE TLGALNSALG PGGPVWFKET HARHLRARDF LAPRRALQAR ENSP00000344989/1-543 MATRRLGVGE TLGALNAALG PGGPVWIKET RTRHLRSRDF LAPHRALQAR ENSTTRP00000016439/1-535 ---MRLGVEE TLGALNAALG PGGPVWFKET RARHLRVRDF LAPRRALEAR bmy_05991T0/1-502 ---MRLGVEE TLRALNAALG PGGPVWFKET RARHLRVRDF LAPRRALQAR BACU020569/1-539 ---MRLGVEE TLGALNAALG PGGPVWFKET RARHLRVRDF LAPRRALQAR 51 100 ENSBTAP00000025168/1-478 FGDDQVPEGV VHAIVGLQGP GVAPVLCCAP TPAGLALRLQ RSVVFERVLC ENSP00000344989/1-543 FDDGQVPEHL LHALACLQGP GVAPVLRCAP TPAGLSLQLQ RSAVFERVLS ENSTTRP00000016439/1-535 FGDDQXXXXX XXXXXXXXXX XXXXXXRCAP TNAQ-AIQYR RYAVIEPIRH bmy_05991T0/1-502 FGDDQVPERV VHAIVGLQGP GVAPVLSCAP TPAGLALQLR RSAVFERVLG BACU020569/1-539 FGDDQVPERV VHAIVGLQGP GVAPVLSCAP TPAGLALQLR RSAVFERVLG 101 150 ENSBTAP00000025168/1-478 SVAAYAAPAA PTAPTPRIVL HCPALRGSPS ALRLSQLRAV IVADHLARIL ENSP00000344989/1-543 AVAAYATPAS PASLGQRVLL HCPALRSSPC ALRLSQLRTV LVADHLARAL ENSTTRP00000016439/1-535 AV-AYSF-TV PAAPGPRVVL HCPALRGSPC ALRLSQLRAV LVADHLARAL bmy_05991T0/1-502 AVAAYAAPTV PAAPGPRVVL HCPALRGSPC ALRLSQLRAV LVADHLARAL BACU020569/1-539 AVAAYAAPTV PAAPGPRVVL HCPALRGSPC ALRLSQLRAV LVADHLARAL 151 200 ENSBTAP00000025168/1-478 QAHRVSVRRV PAVRDPHMTA FLQQLRVDWP EVSEKASTEA LRNRAIAELS ENSP00000344989/1-543 RAHGVCVRLV PAVRDPHMLT FLQQLRVDWP AASERASSHT LRSHALEELT ENSTTRP00000016439/1-535 HAHRVSVRLV PAVRDPHMPT FLQQLRVDWP AASERAATEA LRSRALAELT bmy_05991T0/1-502 HAHRVSVRLV PAVRDPHMPT FLQQLRVDWP AASERAATEA LRSRALAELT BACU020569/1-539 HAHRVSVRLV PAVRDPHMPT FLQQLRVDWP AASERAATEA LRSRALAELT 201 250 ENSBTAP00000025168/1-478 PAGYAGALPP GTLGRVCLKE LMEERGRTAG YDPNVDSCLV TEDLLSLLAE ENSP00000344989/1-543 SANDGRTLSP GILGRLCLKE LVEEQGRTAG YDPNLDNCLV TEDLLSVLAE ENSTTRP00000016439/1-535 PARNAEALPP GALGRVYLKE LVDERGRTTG YDPKLDSCLV TEDLLAVLAE bmy_05991T0/1-502 PA-------- ---------- ---------- ---------L TEDLLAVLAE BACU020569/1-539 PARNAEALPP GALGRVCLKE LVDERGRTTG YDPNLDSCLV TEDLLVVLAE 251 300 ENSBTAP00000025168/1-478 LQEAVQAGAV GSSLGLAAAP DAGADSYVVL HVVSCEEEFQ QQKLDLLWWK ENSP00000344989/1-543 LQEALWHWPE DSHPGLAGAS DTGTGGCLVV HVVSCEEEFQ QQKLDLLWQK ENSTTRP00000016439/1-535 LQQAVQDWAE DSSLGLAAAP DAGADSCMVV HVVSCEEEFQ QQKLDLLWWK bmy_05991T0/1-502 LQQAVQDWAE DSSLGLAAAP DAGAGSCMVV HVVSCEEEFQ QQKLDLLWWK BACU020569/1-539 LQQAVQDWAE DSSLGLAAAP DAGTDSCMVV HVVSCEEEFQ QQKLDLLWWK 301 350 ENSBTAP00000025168/1-478 LDHQAPLSQK HLVCGPVKVA GAPSTL-TAP EYYELRHTQV CKVSSLKHGK ENSP00000344989/1-543 LVDKAPLRQK HLICGPVKVA GAPGTLMTAP EYYEFRHTQV CKASALKHGG ENSTTRP00000016439/1-535 LDDQAPLRQK HLVCGPVKVA GAPGTL-TAP EYYELRHAQV CKASALKRGR bmy_05991T0/1-502 LDDHAPLRQK HLVCGPVKVA GAPGTL-TAP EYYELRHAQV CKASALKHGR BACU020569/1-539 LDDQAPLRQK HLVCGPVKVA GAPGTL-TAP EYYELRHAQV CKASALKHGR 351 400 ENSBTAP00000025168/1-478 DLEQDAAWTD IFRVLSVATV KFEMLSTAPQ SQLLLALADS SISTKGSKSG ENSP00000344989/1-543 DLAQDPAWTE IFGVLSVATI KFEMLSTAPQ SQLFLALADS SISTKGTKSG ENSTTRP00000016439/1-535 DLAQDSAWME IFRVLSVATI K-EMLSTAPQ SQLLLALADS SISTKGTKSG bmy_05991T0/1-502 DLAQDPAWME IFRVLSVATI KFEMLSTAPQ SQLLLALADS SISTKGTKSG BACU020569/1-539 DLAQDPAWME IFRVLSVATI KFEMLSTAPQ SQLLLALADS SISTKGTKSG 401 450 ENSBTAP00000025168/1-478 TFVMYNCARL ATLFEGYKCS VEQGLYPTFP PVSSLDFSLL RDEVS--TPP ENSP00000344989/1-543 TFVMYNCARL ATLFESYKCS MEQGLYPTFP PVSSLDFSLL HDEGEWLLLF ENSTTRP00000016439/1-535 TFVMYNCARL ATLFESYKCS MEQGLYPTFP PVSSLDFSLL HDEGEWLLLF bmy_05991T0/1-502 TFVMYNCARL ATLFESYKCS MEQGLYPTFP PVSSLDFSLL HDEGEWLLLF BACU020569/1-539 TFVMYNCARL ATLFESYKCS MEQGLYPTFP PVSSLDFSLL HDEGEWLLLF 451 500 ENSBTAP00000025168/1-478 GKLGPFPP-- --SALLPHRV SGCYSSTASS ---------- ---------- ENSP00000344989/1-543 NSILPFPDLL SRTAVLDCTA PGLHIAVRTE MICKFLVQLS MDFSSYYNRV ENSTTRP00000016439/1-535 NSILPFPDLL SQTAALPCTA PGLHITARTE MVCKFLVQLS MDFSSYYNRV bmy_05991T0/1-502 NSVLPFPDLL GQTAALPHTA PGLHITARTE MVCKFLVQLS MDFSSYYNRV BACU020569/1-539 NSILPFPDLL GHTAALPRTA PGLHITARTE MVCKFLVQLS MDFSSYYNRV 501 550 ENSBTAP00000025168/1-478 ---------- ---------- ---------- --------PS QTC ENSP00000344989/1-543 HILGEPRPHL FGQMFVRLQL LRAVREVLHT GLAMLGLPPL SHI ENSTTRP00000016439/1-535 HILGEPRPHL FGQMFARLQL LRAVREVLHT GLAMLGLPPL SHI bmy_05991T0/1-502 HILGEPRPHL FGQMFARLQL LRAVREVLHT GLAMLGLPPL SHI BACU020569/1-539 HILGEPRPHL FGQMFARLQL LRAVREVLHT GLAMLGLPPL SHI