KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:18 2014 Check: 00 .. Name: ENSTTRP00000007856/1-838 Len: 1137 Check: 4558 Weight: 1.00 Name: ENSP00000337261/1-927 Len: 1137 Check: 7652 Weight: 1.00 Name: ENSBTAP00000025175/1-940 Len: 1137 Check: 3459 Weight: 1.00 Name: bmy_17419T0/1-1111 Len: 1137 Check: 7750 Weight: 1.00 Name: BACU002065/1-969 Len: 1137 Check: 240 Weight: 1.00 // 1 50 ENSTTRP00000007856/1-838 ---------- ---------- -------RGP SSSPSPAEPM EAEDVARGAA ENSP00000337261/1-927 ---------- ---------- ------MASL STWSSPAEPR EMEDFARGAA ENSBTAP00000025175/1-940 ---------- ---------- SGAPPVTTPR GHQENPAVPM EAEDVARGAA bmy_17419T0/1-1111 SCPARARKRE PGHRARDRRA RPRAPRRSPP RADTSPAEPM EAEDVARGAA BACU002065/1-969 ---------- ---------- ---------- ---------M EAEDVARGAA 51 100 ENSTTRP00000007856/1-838 -PGPPRPGLV PISIIGAEDE DFENELKTXX XXXXX----- ---------- ENSP00000337261/1-927 SPGPSRPGLV PVSIIGAEDE DFENELETNS EEQNSQFQSL EQVKRRPAHL ENSBTAP00000025175/1-940 -PGPPRPGLA PVSIIGAEDE DFEIELKTNP EEQNNQFQNL DQVKRRPAHL bmy_17419T0/1-1111 -PGPPRPGLV PVSIIGAEDE DFENELKTNP EEQNNQFQSL DQVKRRPAHL BACU002065/1-969 -PGPPRPGLV PISIIGAEDE DFENELKTNP EEQNNQFQSL DQVKRRPAHL 101 150 ENSTTRP00000007856/1-838 ---------- --------XX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXI ENSP00000337261/1-927 MALLQHVALQ FEPGPLLCCL HADMLGSLGP KEAKKAFLDF YHSFLEKTAV ENSBTAP00000025175/1-940 MALLQHVAMQ FEPGPLLCCL HADMLGSLGP KEFKKAFIDF YHSFLDKHSI bmy_17419T0/1-1111 MALLQHVAMQ FEPGPLLCCL HADMLGSLGP KEAKKAFGDF CHSFLDKCAI BACU002065/1-969 MALLQHVAMQ FEPGPLLCCL HADMLGSLGP KEAKKAFGDF CHSFLDKCAI 151 200 ENSTTRP00000007856/1-838 LRVTVPPTVA FEL------- ---------- ---------- ---------- ENSP00000337261/1-927 LRVPVPPNVA FEL------- ---------- ---------- ---------- ENSBTAP00000025175/1-940 LRVMVPPAVA FEL------- ---------- ---------- ---------- bmy_17419T0/1-1111 LRVSVPPTVA FELGKERRGD FGMSKSSLAG TRSPPGGRPH SHAPRTGLFF BACU002065/1-969 LRVSVPPTVA FEL------- ---------- ---------- ---------- 201 250 ENSTTRP00000007856/1-838 ---------- ---------- ---------- --DRTRPDLL SEDVQRHFLQ ENSP00000337261/1-927 ---------- ---------- ---------- --DRTRADLI SEDVQRRFVQ ENSBTAP00000025175/1-940 ---------- ---------- ---------- --DRTRPDLF PEDLQRQFVQ bmy_17419T0/1-1111 LLHGHHSPRK HSCQSRRVGG ESQPRELAPV PADRTRPDLL SEDVQRQFVQ BACU002065/1-969 ---------- ---------- ---------- --DRTRPDLL SEDVQRQFVQ 251 300 ENSTTRP00000007856/1-838 EVVQTQQAAV SRQLEDFRSK KLMGMTPWEQ ELIQLGAWVG RDRATYEARE ENSP00000337261/1-927 EVVQSQQVAV GRQLEDFRSK RLMGMTPWEQ ELAQLEAWVG RDRASYEARE ENSBTAP00000025175/1-940 EVVQSQQVAV VRQLEDFRSK KLMGMTPWEQ ELVQLGAWVA RDRASYEARE bmy_17419T0/1-1111 EVVQTQQAAV SRQLEDFRSK KLMGMTPWEQ ELIQLGAWVG RDRASYEARE BACU002065/1-969 EVVQTQQAAV SRQLEDFRSK KLMGMTPWEQ ELIQLGAWVG RDRASYEARE 301 350 ENSTTRP00000007856/1-838 RHLAERQLAH LEDMQHTISN DEEKSAAVVS AITLYMRHLG VRTKSGDKKS ENSP00000337261/1-927 RHVAERLLMH LEEMQHTIST DEEKSAAVVN AIGLYMRHLG VRTKSGDKKS ENSBTAP00000025175/1-940 RHLAERQLTH LEEMQHTISN DEEKSAAVVN AISMYMRHLG VRTKSGDKKS bmy_17419T0/1-1111 RHLAERQLTH LEEMQHTISN DEEKSAAVVS AITLYMRHLG VRTKSGDKKS BACU002065/1-969 RHLAERQLTH LEEMQHTISN DEEKSAAVVS AITLYMRHLG VRTKSGDKKS 351 400 ENSTTRP00000007856/1-838 GRNFFRKKVM GNRRSEEPTK TKKGLSSFLD AARWNRGEPQ APDFRHLKVE ENSP00000337261/1-927 GRNFFRKKVM GNRRSDEPAK TKKGLSSILD AARWNRGEPQ VPDFRHLKAE ENSBTAP00000025175/1-940 GRNFFRKKMI GNRRSDEPTK TKKGLSSFLD AARWNRGEPQ APDFRHPKVE bmy_17419T0/1-1111 GRNFFRKKVM GNRRSEEPTK TKKGLSSFLD AARWNRGEPQ ---------- BACU002065/1-969 GRNFFRKKVM GNRRSEEPTK TKKGLSSFLD AARWNRGEPQ APDFRHLKAE 401 450 ENSTTRP00000007856/1-838 ADGEKPGLTE RKGGLGVPSR DRNVGAPGQD TPGVSLHPLS GDSPDREPGV ENSP00000337261/1-927 VDAEKPGATD RKGGVGMPSR DRNIGAPGQD TPGVSLHPLS LDSPDREPGA ENSBTAP00000025175/1-940 VDAEKPGLTE RKGGQGAPSR DRNLGGPGQD TPGVSPHLLS GDSPDREPGV bmy_17419T0/1-1111 --GEKPGLTE RKGGLGVPSR DRNVGAPGQD TPGVPLHPLS GDSPDREPGV BACU002065/1-969 ADGEKPGLTE RKGGLGVPSR DRNVGPPGQD TPGVPLHPLS GDSPDREPGV 451 500 ENSTTRP00000007856/1-838 DALPELGDPP PQGPASLEPA APLESAEEGA DTE------- ---------- ENSP00000337261/1-927 DAPLELGDSS PQGPMSLESL APPESTDEGA ETE------- ---------- ENSBTAP00000025175/1-940 DALLEVGDPP PQGPASLDAP APLESTEEAA DTE------- ---------- bmy_17419T0/1-1111 DALPELGDPP PQGPASLEPA APLESTEEGA DTERCPGPGA GEVPGAGPGL BACU002065/1-969 DALPELGDPP PQGPASLEPA APLESTEEAA DTE------- ---------- 501 550 ENSTTRP00000007856/1-838 ---------- ---------- ---------- ---------- ---------- ENSP00000337261/1-927 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025175/1-940 ---------- ---------- ---------- ---------- ---------- bmy_17419T0/1-1111 SSAGRLGGRL CPLPVLVPLL WGPFGGWGRL SGRLGRSESL RVSDRRRPSR BACU002065/1-969 ---------- ---------- --------RL SGRLGRSESL RVSDRRRPYR 551 600 ENSTTRP00000007856/1-838 ---------- ---------- ---------- ----SPEPGD EGEPGRLGLE ENSP00000337261/1-927 ---------- ---------- ---------- ----SPEPGD EGEPGRSGLE ENSBTAP00000025175/1-940 ---------- ---------- ---------- ----SPEPGD EGEPGRSGLE bmy_17419T0/1-1111 GSLGAKGRGG GRSRSDVDMD PSSATAVLGP ARRATPEPGD EGEPGRSGLE BACU002065/1-969 GSLGAKGRGG GRSRSDVDMD PSSATAVLGP ARRATPEPGD EGEPGRSGLE 601 650 ENSTTRP00000007856/1-838 LEPEEPPGWR ELVPPGTLHS LPKSQVKRQE VISELLVTEA AHVRMLRVLY ENSP00000337261/1-927 LEPEEPPGWR ELVPPDTLHS LPKSQVKRQE VISELLVTEA AHVRMLRVLH ENSBTAP00000025175/1-940 LEPEEPPGWR ELVPQDILHS LPKSQVKRQE VISELLVTEA AHVRMLRVLH bmy_17419T0/1-1111 LEPEEPPGWR ELVPPGTLHS LPKSQVKRQE VISELLVTEA AHVRMLRVLY BACU002065/1-969 LEPEEPPGWR ELVPPGTLHS LPKSQVKRQE VINELLVTEA AHVRMLRVLY 651 700 ENSTTRP00000007856/1-838 DLFYQPMADG GFFSLEELQN IFPSLDELIE VHSLFLDRLM KRRQDSGYLI ENSP00000337261/1-927 DLFFQPMAEC LFFPLEELQN IFPSLDELIE VHSLFLDRLM KRRQESGYLI ENSBTAP00000025175/1-940 DVFYQPIADG GFYSQEELQN IFPSLDELIE VHSLFLDSLM KRRQDSGYLI bmy_17419T0/1-1111 DLFYQPMADG GFFSLEELQN IFPSLDELIE VHSLFLDRLM KRRQDSGYLI BACU002065/1-969 DLFYQPMADG GFFSLEELQN IFPSLDELIE VHSLFLDRLM KRRQDSGYLI 701 750 ENSTTRP00000007856/1-838 EEIGDVLLAQ FDGTEGSWFQ KISSRFCSRQ SFALEQLKAK QRKEPRFCAF ENSP00000337261/1-927 EEIGDVLLAR FDGAEGSWFQ KISSRFCSRQ SFALEQLKAK QRKDPRFCAF ENSBTAP00000025175/1-940 KEIGDVLLAR FDGAEGSWFQ KISSRFCSRQ SFALEQLKAK QRKEPRFCTF bmy_17419T0/1-1111 EEIGDVLLAQ FDGTEGSWFQ KISSRFCSRQ SFALEQLKAK QRKEPRFCAF BACU002065/1-969 EEIGDVLLAQ FDGTEGSWFQ KISSRFCSRQ SFALEQLKAK QRKEPRFCAF 751 800 ENSTTRP00000007856/1-838 VQEAESRPRC RRLQLKDMIP TEMQRLTKYP LLLQSIGQNT EEPAEREKVE ENSP00000337261/1-927 VQEAESRPRC RRLQLKDMIP TEMQRLTKYP LLLQSIGQNT EEPTEREKVE ENSBTAP00000025175/1-940 VQEAESRPRC RRLQLKDMIP TEMQRLTKYP LLLQSIEQNT EEPVEREKVE bmy_17419T0/1-1111 VQEAESRPRC RRLQLKDMIP TEMQRLTKYP LLLQSIGQNT EEPAEREKVE BACU002065/1-969 VQEAESRPRG RRLQLKDMIP TEMQRLTKYP LLLQSIGQNT EELAEREKVE 801 850 ENSTTRP00000007856/1-838 LAAECCREIL HHVNQAVRDM EDLLRLKDYQ RRLDLSHLRQ SSDPMLSEFK ENSP00000337261/1-927 LAAECCREIL HHVNQAVRDM EDLLRLKDYQ RRLDLSHLRQ SSDPMLSEFK ENSBTAP00000025175/1-940 RAAECCREIL QHVNLAVRDM EDLLRLKDYQ RRLDLTHLRQ SNDPMLSEFK bmy_17419T0/1-1111 LAAECCREIL HHVNQAVRDM EDLLRLKDYQ RRLDLSHLRQ SSDPMLSEFK BACU002065/1-969 LAAECCREIL HHVNQAVRDM EDLLRLKDYQ RRLDLSHLRQ SSDPMLSEFK 851 900 ENSTTRP00000007856/1-838 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000337261/1-927 NLDITKKKLV HEGPLTWRVT KDKAVEVHVL LLDDLLLLLQ RQDERLLLKS ENSBTAP00000025175/1-940 NLDITKKRLI YEGPLTWRVT KDKAVEVHVL LLDDLLLLLQ RQDERFLLKS bmy_17419T0/1-1111 NLDITKKKLV HEGPLTWRVT KDKAVEVHVL LLDDLLLLLQ RQDERLLLKS BACU002065/1-969 NLDITKKRLV HEGPLTWRVT RDKAVEVHVL LLDDLLLLLQ RQDERLLLKS 901 950 ENSTTRP00000007856/1-838 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000337261/1-927 HSRTLTPTPD GKTMLRPVLR LTSAMTREVA TDHKAFYVLF TWDQEAQIYE ENSBTAP00000025175/1-940 HSRTLTPTPD GKTMLRPVLR LTSAMTREVA TDHKAFYVIF TWDQEAQIYE bmy_17419T0/1-1111 HSRTLTPTPD GKTMLRPVLR LTSAMTREVA TDHKAFYVIF TWDQEAQIYE BACU002065/1-969 HSRTLTPTPD GKTMLRPVLR LTSAMTREVA TDHKAFYVIF TWDQEAQIYE 951 1000 ENSTTRP00000007856/1-838 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000337261/1-927 LVAQTVSERK NWCALITETA GSLKVPAPAS RPKPRPSPSS TREPLLSSSE ENSBTAP00000025175/1-940 LVAQTVSERR IWCTLITETA GCLKVPSRTS RPKHRPGPSS TREPLLSSSE bmy_17419T0/1-1111 LVAQTVSERK NWCALITETA GSLKVPARTS RPKHRPSPSS TREPLLSSSE BACU002065/1-969 LVAQTVSERK NWCALITETA GSLKVPARTS RPKHRPSPSS TREPLLSSSE 1001 1050 ENSTTRP00000007856/1-838 XXXXXXXXXP ADGRMERIFS ALLPFCRPGP EGQLAARALQ K--------- ENSP00000337261/1-927 NGNGGRETSP ADARTERILS DLLPFCRPGP EGQLAATALR KVLSLKQLLF ENSBTAP00000025175/1-940 NGNGSREMPP ADGRMERLFN SLLPFCRQGL EGQLAAKALQ KVLTLKQLLL bmy_17419T0/1-1111 NGNGGREMPP ADGRMERIFS ALLPFCRPGP EGQLAAKALQ KVLSLKQLLL BACU002065/1-969 NGNGGREMPP ADGRMERIFS ALLPFCRPGP EGQLAAKALQ KVLSLKQLLL 1051 1100 ENSTTRP00000007856/1-838 ------GGG- ---GGVLPPE TPPVSARGEH CPPFWLYL-- ---------- ENSP00000337261/1-927 PAEEDNGAGP PRDGDGVPGG GPLSPARTQE IQENLLSLEE TMKQLEELEE ENSBTAP00000025175/1-940 PSEEDSGAGP PLEGDGVPGG SPLSPTQPQE IREELLSLEE TIKQLEEVEE bmy_17419T0/1-1111 PSEEDSGVGP LLEGDGVPGG GPXSPAQPQE IREELLSLEE TIKQLEVVA- BACU002065/1-969 PSEEDSGVGP PLEGDGVPGG GPPSPAQPQE IREELLSLEE TIKQLEEVEE 1101 1150 ENSTTRP00000007856/1-838 ---------- ---------- ---------- ------- ENSP00000337261/1-927 EFCRLRPLLS QLGGNS---- VPQPGCT--- ------- ENSBTAP00000025175/1-940 EFCRLRLLLS QLGTPSPSLA VPEAPCPRQV S------ bmy_17419T0/1-1111 --------LR PFRKKE---- RATRHCTAAA ASPTPRA BACU002065/1-969 ELCRLRLLLS PLGEST---- VPQSGCT--- -------