KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:21 2014 Check: 00 .. Name: ENSTTRP00000002175/1-432 Len: 538 Check: 7841 Weight: 1.00 Name: ENSP00000312273/1-537 Len: 538 Check: 1447 Weight: 1.00 Name: ENSBTAP00000025189/1-538 Len: 538 Check: 7860 Weight: 1.00 Name: bmy_12269T0/1-537 Len: 538 Check: 7330 Weight: 1.00 Name: BACU000587/1-435 Len: 538 Check: 4974 Weight: 1.00 // 1 50 ENSTTRP00000002175/1-432 ---------- ---------- ---------- ---------- ---------- ENSP00000312273/1-537 MGGAGI-LLL LLAGAGVVVA WRPPKGKCPL RCSCSKDSAL CEGSPDLPVS ENSBTAP00000025189/1-538 MGGAGILLLL LLAGLGVGEA WRPPKGKCPL SCSCSKDSAL CEGSVDLPEI bmy_12269T0/1-537 MGGAGI-LLL LLAGVGVGEA WRPPKGKCPL GCSCSKDSAL CEGSPDLPES BACU000587/1-435 MGGAGI-LLL LLAGVGVGEA WRPPKGKCPL GCSCSKDSAL CEGSPDLPES 51 100 ENSTTRP00000002175/1-432 ---------- ---------- ---------- ---------- ---------- ENSP00000312273/1-537 FSPTLLSLSL VRTGVTQLKA GSFLRIPSLH LLLFTSNSFS VIEDDAFAGL ENSBTAP00000025189/1-538 LSPTLLSLSF VRTRITQLKA GSFLRVPSLH LLLFTSNSFS VIEDDAFAGL bmy_12269T0/1-537 FAPTLLSLSL VRTGITQLKA GSFLRVPSLH LLLFTSNSFS VIEDDAFAGL BACU000587/1-435 FAPTLLS--- ---------- ---------- -LLFTSNSFS VIEDDAFAGL 101 150 ENSTTRP00000002175/1-432 ------FIED NEIGSISKNA LRGLRSLTHL SLANNHLETL PRFLFRGLET ENSP00000312273/1-537 SHLQYLFIED NEIGSISKNA LRGLRSLTHL SLANNHLETL PRFLFRGLDT ENSBTAP00000025189/1-538 SHLQYLFIED NEIGSISKNA LRGLRSLTHL SLANNHLETL PRFLFRGLET bmy_12269T0/1-537 SHLQYLFIED NEIGSISKNA LRGLRSLTHL SLANNHLETL PRFLFRGLET BACU000587/1-435 SHLQYLFIED NEIGSISKNA LRGLRSLTHL ---------- ---------- 151 200 ENSTTRP00000002175/1-432 LTHVXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000312273/1-537 LTHVDLRGNP FQCDCRVLWL LQWMPTVNAS VGTGACAGPA SLSHMQLHHL ENSBTAP00000025189/1-538 LTHVDLRGNP FQCDCRVLWL LQWIPTVNAS VGTGACAGPA ALAHMQLRHV bmy_12269T0/1-537 LTHVDLRGNP FQCDCRVLWL LQWIPTVNAS VGTGACAGPT ALAHMQLHHL BACU000587/1-435 ----DLRGNP FQCDCRVLWL LQWIPTVNAS VGTGACAGPA ALAHMQLHHL 201 250 ENSTTRP00000002175/1-432 XXXXXXXXXX XLSWFQTVGE SALGVEAFSY QGEPHVVLAQ PFAGRCLILT ENSP00000312273/1-537 DPKTFKCRAI ELSWFQTVGE SALSVEPFSY QGEPHIVLAQ PFAGRCLILS ENSBTAP00000025189/1-538 DPKTFKCRAI ELSWFQTVGE SALGVEAFSY QEEPYIVLAQ PFAGRCLILA bmy_12269T0/1-537 DPKTFKCRAI ELSWFQTVGE SALGVEAFSY QGEPHVVLAQ PFAGRCLILT BACU000587/1-435 DPKTFKCRAI ELSWFQTVGE SALGVEAFSY QGEPHVVLAQ PFAGRCLILT 251 300 ENSTTRP00000002175/1-432 WDYSLQSFRQ EEELSAPSVV SCKPLVLGPR LFVLAARLWG GSQLWARPGP ENSP00000312273/1-537 WDYSLQRFRP EEELPAASVV SCKPLVLGPS LFVLAARLWG GSQLWARPSP ENSBTAP00000025189/1-538 WDYSLQRFRQ EEELSAPSVV SCKPLVLGPR LFMLAARLWG GSQLWARPGP bmy_12269T0/1-537 WDYSLQRFRQ EEELSAPSVV SCKPLVLGPR LFVLAARLWG GSQLWARPGP BACU000587/1-435 WDYSLQRFRQ EEELSAPSVV SCKPL----- ---------- ---------- 301 350 ENSTTRP00000002175/1-432 DLRLAPLQAL APRRLLRPND AELLWLDGQP CFVVADASKA GSTTLLCRDG ENSP00000312273/1-537 GLRLAPTQTL APRRLLRPND AELLWLEGQP CFVVADASKA GSTTLLCRDG ENSBTAP00000025189/1-538 DLRLAPLQAL APRRLLRPND AELLWLDGQP CFVVADASKA GSTTLLCRDG bmy_12269T0/1-537 DLRLAPLQAL APRRLLRPND AELLWLDGQP CFVVADASKA GSTTLLCRDG BACU000587/1-435 ---------- ---------- ---------P CFVVADASKA GSTTLLCRDG 351 400 ENSTTRP00000002175/1-432 PGFYPRQSLH AWHRDTDAEA LELDGRPHLL LASASQRPVL FHWFGGRFER ENSP00000312273/1-537 PGFYPHQSLH AWHRDTDAEA LELDGRPHLL LASASQRPVL FHWTGGRFER ENSBTAP00000025189/1-538 PGFYPRQSLH AWHRDTDVEA LELDGRPHLL LASASQRPVL FHWFGGRFER bmy_12269T0/1-537 PGFYPRQSLH AWHRDTDAEA LELDGRPHLL LASASQRPVL FHWFGGRFER BACU000587/1-435 PGFYPRQSLH AWHRDTDAEA LELDGRPHLL LASASQRPVL FHWFGGRFER 401 450 ENSTTRP00000002175/1-432 RTDIPEAEDV YATRHFQASG DVFLCLTRYI GDSMVMRWDG SMFRVLQQLP ENSP00000312273/1-537 RTDIPEAEDV YATRHFQAGG DVFLCLTRYI GDSMVMRWDG SMFRLLQQLP ENSBTAP00000025189/1-538 RTDIPEAEDV YATRHFQAGG DVFLCLTRYI GDSMVMRWDG SMFRLLQKLP bmy_12269T0/1-537 RTDIPEAEDV YATRHFQASG DVFLCLTRYI GDSMVMRWDG SMFRPLQQLP BACU000587/1-435 RTDIPEAEDV YATRHFQASG DVFLCLTRYI GDSMVMRWDG SMFRPLQQLP 451 500 ENSTTRP00000002175/1-432 SRGAHVFQPL LIARDQLAIL GSDFAFSQVF RLEPDRGLLE PLQELGPPAL ENSP00000312273/1-537 SRGAHVFQPL LIARDQLAIL GSDFAFSQVL RLEPDKGLLE PLQELGPPAL ENSBTAP00000025189/1-538 SRGAHVFQPL LIAKDQLAIL GSDFAFSQVF RLEPDKGLLE PLQELGPPAI bmy_12269T0/1-537 SRGAHVFQPL LIARDQLAIL GSDFAFSQVF RLEPDRGLLE PLQELGPPAL BACU000587/1-435 SRGAHVFQPL LIARDQLAIL GSDFAFSQVF RLEPDRGLLE PLQELGPPAL 501 550 ENSTTRP00000002175/1-432 VAPRAFAHIT MAGRRFLFAA CFKGPTQIYQ HHELDLSA ENSP00000312273/1-537 VAPRAFAHIT MAGRRFLFAA CFKGPTQIYQ HHEIDLSA ENSBTAP00000025189/1-538 VAPRAFAHIT MAGRRFLFAA CFKGPTQIYQ HHELDLSA bmy_12269T0/1-537 VAPRAFAHIT MAGRRFLFAA CFKGPTQIYQ HHELDLSA BACU000587/1-435 VAPRAFAHIT MAGRRFLFAA CFKGPTQIYQ HHELDLSA