KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:21 2014 Check: 00 .. Name: bmy_13801T0/1-478 Len: 650 Check: 3927 Weight: 1.00 Name: ENSP00000254816/1-638 Len: 650 Check: 4062 Weight: 1.00 Name: ENSBTAP00000025190/1-649 Len: 650 Check: 9342 Weight: 1.00 Name: BACU011526/1-384 Len: 650 Check: 3776 Weight: 1.00 Name: ENSTTRP00000015059/1-638 Len: 650 Check: 3493 Weight: 1.00 // 1 50 bmy_13801T0/1-478 MDGSGPFSCP ICLEPLREPV TLPCGHNFCL ACLGALWPHR GVGGAGGPGG ENSP00000254816/1-638 MDGSGPFSCP ICLEPLREPV TLPCGHNFCL ACLGALWPHR GASGAGGPGG ENSBTAP00000025190/1-649 MDGSGPFSCP ICLEPLREPV TLPCGHNFCL ACLGTLWPHR GAGGAGGPGG BACU011526/1-384 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015059/1-638 MDGSGPFSCP ICLESLRESV TLPCGHNFCL ACLGALWPHR GACGAGGPGG 51 100 bmy_13801T0/1-478 TARCPLCQEP FPDGLQLRKN HTLSELLQLR QGSGPGPGPG PARAPEPVA- ENSP00000254816/1-638 AARCPLCQEP FPDGLQLRKN HTLSELLQLR QGSGPGSGPG PAPALAPEPS ENSBTAP00000025190/1-649 TARCPLSQEP FPDGLQLRKN HKQSELLQLR QGSGPGPGPC PAPAPSPCPA BACU011526/1-384 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015059/1-638 TARCPLCQRA FPDGL-LRKN QTLSELLQLR QGSGLGPGTS PARAPQSLAP 101 150 bmy_13801T0/1-478 ---------- ---PSAPPSA PEPSAPCAPE PWPAGEEPVR CDACPEGAAL ENSP00000254816/1-638 A--------- ---PSALPSV PEPSAPCAPE PWPAGEEPVR CDACPEGAAL ENSBTAP00000025190/1-649 PAPGPAPAPE PATPSAPPSA PEPSAPCAPE SWPPGEEPVR CDACPEGAAL BACU011526/1-384 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015059/1-638 SAP------- ---PSAPPTP PEPTAPCAPD PDPADEYPER XXXXXXXXXX 151 200 bmy_13801T0/1-478 PAALSCLSCF ASFCPAHLGP HERSPALRGH RLVPPLRRLE ESLCPRHLRP ENSP00000254816/1-638 PAALSCLSCL ASFCPAHLGP HERSPALRGH RLVPPLRRLE ESLCPRHLRP ENSBTAP00000025190/1-649 PAALSCLSCL ASFCPAHLGP HERSPALRGH RLVPPLRRLE ESLCPRHLRP BACU011526/1-384 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015059/1-638 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX 201 250 bmy_13801T0/1-478 LERYCRAERV CLCEACAAQE HRGHELVPLE QERALQE--- ---------- ENSP00000254816/1-638 LERYCRAERV CLCEACAAQE HRGHELVPLE QERALQEAEQ SKVLSAVEDR ENSBTAP00000025190/1-649 LERYCRAERV CLCEACAAQE HRGHELVPLE QERALQEAEQ PKVLSAVEDR BACU011526/1-384 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015059/1-638 XXXXXXXXXX XLCEACAVQE HRGHELVSVE QERALQEAEQ PKVLSAVEDR 251 300 bmy_13801T0/1-478 ---------- ---------- ---------- ---------- ---------- ENSP00000254816/1-638 MDELGAGIAQ SRRTVALIKS AAVAERERVS RLFADAAAAL QGFQTQVLGF ENSBTAP00000025190/1-649 MDELGAGIAQ SRRTVALIKS AAVAERERVS RLFAEAAAVL QGFQTQVLGF BACU011526/1-384 MDELGAGIAQ SRRTVALIKS AAVAERERVS RLFAEAAAVL QGFQTEVLAF ENSTTRP00000015059/1-638 MDELGAGIAQ SRRTVALIKS TAVAERERVS RLFAEAAAVL QGFQAEVLSF 301 350 bmy_13801T0/1-478 --------VG RGRGGLAGGR RASRRAAQSP ---------- ---------- ENSP00000254816/1-638 IEEGEAAMLG RSQGDLRRQE EQRSRLSRAR QNLSQVPEAD SVSFLQELLA ENSBTAP00000025190/1-649 IDEGEATMLG RSQGDLRRQE EQRSRLSRAR HNLSQVPEAD SVSFLQELLA BACU011526/1-384 IDEGEATLLG RSQGDLRRQE EQRSRLSRAR ---------- ------ELLA ENSTTRP00000015059/1-638 IDEGEATMLG RSQGDLRRQE GQRSRLSRAR HNLGQVPEAD SVSFLQELLE 351 400 bmy_13801T0/1-478 ------ECCG ---GPHG--- --RAGSGHRT VPA------- ---------- ENSP00000254816/1-638 LRLALEDGCG PGPGPPRELS FTKSSQAVRA VRDMLAVACV NQWEQLRGPG ENSBTAP00000025190/1-649 LRLALEEGCG PGPGPPKELS FTKSSQAVRA VRAVLAAACS SQWEQLRGLG BACU011526/1-384 LRLALEEGCG PGPGPPRELS FTKSSQAVQV VRDGLASACT SQWEQLQGLG ENSTTRP00000015059/1-638 LRLALEEGCG PGPGPPGELS FTKSSQAVQV VRDGLASACT SQWEQLQGLG 401 450 bmy_13801T0/1-478 ---------- ---------- ---------- ------HVAY IVDLDSDTAD ENSP00000254816/1-638 GNEDGPQKLD SEADAEPQDL ESTNLLESEA PRDYFLKFAY IVDLDSDTAD ENSBTAP00000025190/1-649 GDEDGLQKPG TEADAESQDP DSTNNLESEA PRDYFLKFAY IVDLDSDTAD BACU011526/1-384 SDEDGLQKPG TEADAESQDP ESTNSLESEA PRDYFLKFAY IVDLDSDTAD ENSTTRP00000015059/1-638 SDEDGLQKPG TEADAESQDP ESANSLESEA PRDYFLKFAY IVDLDSDTAD 451 500 bmy_13801T0/1-478 KFLQLFGTKG VKRVLCPINY PESPTRFTHC EQVLGEGALD RGTYYWEVEI ENSP00000254816/1-638 KFLQLFGTKG VKRVLCPINY PLSPTRFTHC EQVLGEGALD RGTYYWEVEI ENSBTAP00000025190/1-649 KFLQLFGTKG VKRVLCPINY PESPTRFTHC EQVLGEGALD RGTYYWEVEI BACU011526/1-384 KFLQLFGTKG VKRVLCPINY PESPTRFTHC EQVLGEGALD RGTYYWEVEI ENSTTRP00000015059/1-638 KFLQLFGTKG VKRVLCPINY PESPTRFTHC EQVLGEGALD RGTYYWEVEI 501 550 bmy_13801T0/1-478 IEGWVSVGVM AEDFSPQEPY DRGRLGRNAH SCCLQWNGRS FSVWFHGLEV ENSP00000254816/1-638 IEGWVSMGVM AEDFSPQEPY DRGRLGRNAH SCCLQWNGRS FSVWFHGLEA ENSBTAP00000025190/1-649 IEGWVSVGVM AEDFSPQEPY DRGRLGRNAY SCCLQWNGRS FSVWFHGQEA BACU011526/1-384 IEGWVSVGVM AEDFSPQEPY DRGRLGRNAH SCCLQWNGRS FSVWFHGLEV ENSTTRP00000015059/1-638 IEGWVSVGVM AEDFSPQEPY DRGRLGRNAH SCC-QWNGRS FSVWFHGLEL 551 600 bmy_13801T0/1-478 LLPHPFSPTV GICLEYADRA LAFYAVRDGK MSLLRRLKSS RARRCGTPAS ENSP00000254816/1-638 PLPHPFSPTV GVCLEYADRA LAFYAVRDGK MSLLRRLKAS RPRRGGIPAS ENSBTAP00000025190/1-649 PLPHPFSPTV GICLEYADRA LAFYAVRDGK MSLLRRLRAS R-RRSGTPAS BACU011526/1-384 LLPQPFSPTV GICLEYADRA LAFYAVRDGK MSLLRRLKSS RARRCGTPAS ENSTTRP00000015059/1-638 LLPHPFSPTV GICLEYADRT LAFYAVRDGK MSLLRRLKTS RARRSGTPAS 601 650 bmy_13801T0/1-478 PVDPFQSRLD SHFAGLFTHR LKPAFFLESV DAHLQIGPLK KSCISVLKRR ENSP00000254816/1-638 PIDPFQSRLD SHFAGLFTHR LKPAFFLESV DAHLQIGPLK KSCISVLKRR ENSBTAP00000025190/1-649 PVDPFQSRLD SHFAGLFTRR LKPAFFLESV DAHLQIGPLK KSCISVLKRR BACU011526/1-384 PVDPFQSRLD SHFAELFTHR LKPAFFLESV DAHLQIGPLK KSCISVLKRR ENSTTRP00000015059/1-638 PVDPFQSRLD SHFAGLFTHR LKPAFFLESV DAHLQIGPLK KSCISVLKRR