KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:21 2014 Check: 00 .. Name: ENSBTAP00000025191/1-774 Len: 907 Check: 4793 Weight: 1.00 Name: ENSP00000307567/1-775 Len: 907 Check: 1903 Weight: 1.00 Name: bmy_05995T0/1-862 Len: 907 Check: 8537 Weight: 1.00 Name: BACU002407/1-791 Len: 907 Check: 1548 Weight: 1.00 Name: ENSTTRP00000016445/1-775 Len: 907 Check: 3622 Weight: 1.00 // 1 50 ENSBTAP00000025191/1-774 MAALDSLSLF TGLGLSEQKA RETLKNTVLS AQLREAATQA QQTLGSSIDK ENSP00000307567/1-775 MAALDSLSLF TSLGLSEQKA RETLKNSALS AQLREAATQA QQTLGSTIDK bmy_05995T0/1-862 MAALDSLSLF TGLGLSEHKA RETLKNTALS AQLREAATQA QQTLGCTIDK BACU002407/1-791 MAALDSLSLF TGLGLSEHKA RETLKNTALS AQLREAATQA QQTLGCTIDK ENSTTRP00000016445/1-775 MAALDPLSLF TGLGLSEHKA RETLKNTALS AQLREAATQA QQTLGCTIDK 51 100 ENSBTAP00000025191/1-774 ATGTLLYGLA SRLRDPRRLS FLVSYITSRK IHTETQLSAA LEYVRSHPLD ENSP00000307567/1-775 ATGILLYGLA SRLRDTRRLS FLVSYIASKK IHTEPQLSAA LEYVRSHPLD bmy_05995T0/1-862 ATGTLLYGLA SRLRDPRRLS FLVSYIANRK IHTETQLSAA LEYVRSHPLD BACU002407/1-791 ATGTLLYGLA SRLRDPRRLS FLVSYIANRK IHTETQLS-- ---VRSHPLD ENSTTRP00000016445/1-775 ATGTLLYGLA SRLRDPRRLS FLVSYIANRK IHTETQLSAA LEYVRSHPLD 101 150 ENSBTAP00000025191/1-774 PINTEDFEQE CGVGVVVTPE QIEEAVEAAI NRHRAKLLVE RYHFSMGLLM ENSP00000307567/1-775 PIDTVDFERE CGVGVIVTPE QIEEAVEAAI NRHRPQLLVE RYHFNMGLLM bmy_05995T0/1-862 PINTMDFEQE CGVGIVVTPE QIEEAVEAAI NRHRPQLLVE RYHFNMGLLM BACU002407/1-791 PINTMDFTQE CGVGIVVTPE QIEEAVEAAI NRHRPQLLVE RYHFNMGLLM ENSTTRP00000016445/1-775 PINTMVFEQE CGVGVVVTPE QIEEAVEAAI NRHRPQLLVE RYHFNMGLLM 151 200 ENSBTAP00000025191/1-774 GEARAALKWA DGKMIKHEVD MQVLHLLGPK TETDLEKKPK ---------- ENSP00000307567/1-775 GEARAVLKWA DGKMIKNEVD MQVLHLLGPK LEADLEKKFK ---------- bmy_05995T0/1-862 GEARAALKWA DGKMIKHEVD MQVLHLLGPK TETDLEKKPK ---------- BACU002407/1-791 GEARAALKWA DGKMIKHEVD MQVLHLLGPK TETDLEKKPK VGLSMVLGPG ENSTTRP00000016445/1-775 GEARAALKWA DGKMIKHEVD MQVLHLLGPK TETDLEKKPK ---------- 201 250 ENSBTAP00000025191/1-774 --VAKARPEE TDQRTAKDVV ENGEVVVQTL SLMEQLRGEA LKFHKPGENY ENSP00000307567/1-775 --VAKARLEE TDRRTAKDVV ENGETADQTL SLMEQLRGEA LKFHKPGENY bmy_05995T0/1-862 --VAKARPEE TARRTAKDVV EN-------- ---------- ------GENY BACU002407/1-791 DEVAKARPEE TDRRTAKDVV ENGEAVVQTL SLMEQLRGEA LKFHKPGENY ENSTTRP00000016445/1-775 --VAKARPEE TDRRTAKDVV ENGETVVQTL SLMEQLRGEA LKFHKPGENY 251 300 ENSBTAP00000025191/1-774 KTPGYVTTPH TMDLLKQHLD ITGGQVRTRF PPEPNGILHI GHAKAINFNF ENSP00000307567/1-775 KTPGYVVTPH TMNLLKQHLE ITGGQVRTRF PPEPNGILHI GHAKAINFNF bmy_05995T0/1-862 KTPGYVTTPH TVDLLKQHLE ITGGQVRTRF PPEPNGILHI GHAKAINFNF BACU002407/1-791 KTPGYVTTPH TMDLLKQHLE ITGGQVRTRF PPEPNGILHI GHAKAINFNF ENSTTRP00000016445/1-775 KTPGYVTTPY TMDLLKQHLE ITGGQVRTRF PPEPNGILHI GHAKAINFNF 301 350 ENSBTAP00000025191/1-774 GYAKANNGIC FLRFDDTNPE KEEAKFFTAI YDMVAWLGYT PYKVTYASDY ENSP00000307567/1-775 GYAKANNGIC FLRFDDTNPE KEEAKFFTAI CDMVAWLGYT PYKVTYASDY bmy_05995T0/1-862 GYAKANNGIC FLRFDDTNPE KEEAKFFTAI CDMVAWLGYT PYKVTYASNY BACU002407/1-791 GYAKANNGIC FLRFDDTNPE KEEAKFFTAI CDMVAWLGYT PYKVTYASNY ENSTTRP00000016445/1-775 GYAKANNGIC FLRFDDTNPE KEEAKFFTAI CDMVAWLGYI PYKVTYASNY 351 400 ENSBTAP00000025191/1-774 FDQLYAWAVE LIRRDQAYVC HQRGEELKGH NPLPSPWRDR PIEESLLLFE ENSP00000307567/1-775 FDQLYAWAVE LIRRGLAYVC HQRGEELKGH NTLPSPWRDR PMEESLLLFE bmy_05995T0/1-862 FDQLYAWAEE LIRRGQAYVC HQRGEELKGH NPLPSPWRDR PTEESLLLFE BACU002407/1-791 FDQLYAWAEE LIRRGQAYVC HQRGEELKGH NPLPSPWRDR PTEESLLLFE ENSTTRP00000016445/1-775 FDQLYAWAEE LIRRGQAYVC HQRGEELKGH NPLPSPWRDR PTEESLLLFE 401 450 ENSBTAP00000025191/1-774 AMRKGKFAEG EATLRMKLVM EDGKMDPVAY RVKYTPHHRT GDTWCIYPTY ENSP00000307567/1-775 AMRKGKFSEG EATLRMKLVM EDGKMDPVAY RVKYTPHHRT GDKWCIYPTY bmy_05995T0/1-862 AMRKGKFAEG EATLRMKLVM EDGKMDPVAY RVKYTPHHRT GDTWCIYPTY BACU002407/1-791 AMRKGKFAEG EATLRMKLVM EDGKMDPVAY RVKYTPHHRT GDTWCIYPTY ENSTTRP00000016445/1-775 AMRKGKFAEG EATLRMKLVM EDGKMDPVAY RVKYTPHHRT GDTWCIYPTY 451 500 ENSBTAP00000025191/1-774 DYTHCLCDSI EHITHSLCTK EFQAR----- ----RSSYFW LCNALDVYCP ENSP00000307567/1-775 DYTHCLCDSI EHITHSLCTK EFQAR----- ----RSSYFW LCNALDVYCP bmy_05995T0/1-862 DYTHCLCDSI EHITHSLCTK EFQAR----- ----RSSYFW LCNALDVYCP BACU002407/1-791 DYTHCLCDSI EHITHSLCTK EFQARRSXXX XXXXRSSYFW LCNALDVYCP ENSTTRP00000016445/1-775 DYTHCLCDSI EHITHSLCTK EFQAR----- ----RSSYFW LCNALDVYCP 501 550 ENSBTAP00000025191/1-774 VQWEYGRLNL HYAVVSXKKI LQLVAAGAVR DWDDPRLFTL TALRRRGFPP ENSP00000307567/1-775 VQWEYGRLNL HYAVVSKRKI LQLVATGAVR DWDDPRLFTL TALRRRGFPP bmy_05995T0/1-862 VQWEYGRLNL HYAVVSKRKI LQLVAAGAVR DWDDPRLFTL TALRRRGFPP BACU002407/1-791 VQWEYGRLNL HYAVVSKRKI LQLVAAGAVR DWDDPRLFTL TALRRRGFPP ENSTTRP00000016445/1-775 VQWEYGRLNL HYAVVSKRKI LQLVAAGAVR DWDDPRLFTL TALRGRGSPP 551 600 ENSBTAP00000025191/1-774 EAINNFCARV GVTVAQTTME PHLLEACVRD VLNDTAPRAM AVLEPLQVVI ENSP00000307567/1-775 EAINNFCARV GVTVAQTTME PHLLEACVRD VLNDTAPRAM AVLESLRVII bmy_05995T0/1-862 EAINNFCARV GVTVAQTTME PHLLEACVRD VLNDTAPRAM AVLEPLQVVI BACU002407/1-791 EAINNFCARV GVTVAQTTME PHLLEACVRD VLNDTAPRAM AVLEPLQVVI ENSTTRP00000016445/1-775 EAINNFCARV GVTVAQTTME PHLLEACVRD VLNDTAPRAM AVLEPLQVVI 601 650 ENSBTAP00000025191/1-774 TNFPATKVSL LQGVRFAPEL SLRTHHPFFK PVSARHRGG- RSEPEPGYKR ENSP00000307567/1-775 TNFPAAKSLD IQVPNFPADE TKGFHQVPFA PIVFIERTDF KEEPEPGFKR bmy_05995T0/1-862 TNFPAAKSLD IQVPSFPADE TKGFHQIPFG PIVFIERTDF REEPEPGYKR BACU002407/1-791 TNFPAAKSLD IQVPSFPADE TKGFHQIPFG PIVFIERTDF REEPEPGYKR ENSTTRP00000016445/1-775 TNFPAAKSLD IQVPSFPADE TKGFHQIPFG PIVFIERTDF KEEPEPGYKR 651 700 ENSBTAP00000025191/1-774 LAWGQPVGLR HTGYVIELQH VVK------- ---------- ---------- ENSP00000307567/1-775 LAWGQPVGLR HTGYVIELQH VVK------- ---------- ---------- bmy_05995T0/1-862 LVWGQPVGLR HTGYIIELQH VVKVRASCSL PTTVPAGVRI WVQLAVLVVV BACU002407/1-791 LAWGQPVGLR HTGYIIELQH VVK------- ---------- ---------- ENSTTRP00000016445/1-775 LAWGQPVGLR HTGYVIELQH VVK------- ---------- ---------- 701 750 ENSBTAP00000025191/1-774 ---------- -GPSGCVESL KVTCRRADAG EKPKAFIHWV SQPLTCEIRL ENSP00000307567/1-775 ---------- -GPSGCVESL EVTCRRADAG EKPKAFIHWV SQPLMCEVRL bmy_05995T0/1-862 SKSDCRPLDF QGPSGCVERL EVTCRRADAG EKPKAFIHWV SQPLTCEIRL BACU002407/1-791 ---------- -GPSGCVERL EVTCRRADAG EKPKAFIHWV SQPLTCEIRL ENSTTRP00000016445/1-775 ---------- -GPSGCVESL EVTCRRADAG EKPKAFIHWV SQPLTCEIRL 751 800 ENSBTAP00000025191/1-774 YERLFQHKNP EDPAEVPGGF LSDLNPASLQ VVEAALVDCS VALAKPFDKF ENSP00000307567/1-775 YERLFQHKNP EDPTEVPGGF LSDLNLASLH VVDAALVDCS VALAKPFDKF bmy_05995T0/1-862 YERLFQHKNP EDPAEVPGGF LSDLNPASLQ VVEAALVDCS VALAKPFDKF BACU002407/1-791 YERLFQHKNP EDPAEVPGGF LSDLNPASLQ VVEAALVDCS VALAKPFDKF ENSTTRP00000016445/1-775 YERLFQHKNP EDPAEVPGGF LSDLNPASLQ VVEAALVDCS VALAKPFDKF 801 850 ENSBTAP00000025191/1-774 QFERLGYFSV DPDSNQG--- ---------- ---------Q LVFNR----- ENSP00000307567/1-775 QFERLGYFSV DPDSHQG--- ---------- ---------K LVFNR----- bmy_05995T0/1-862 QFERLACLQP DRHTEGGPRK SVNWKSCGPT SSFWRRGVPR LHVNKEQLNP BACU002407/1-791 QFERLGYFSV DPDSRQG--- ---------- ---------Q LVFNR----- ENSTTRP00000016445/1-775 QFERLGYFSV DPDSRQG--- ---------- ---------Q LVFNR----- 851 900 ENSBTAP00000025191/1-774 ---------- ---------- ---------- ----TVTLKE DPGKV----- ENSP00000307567/1-775 ---------- ---------- ---------- ----TVTLKE DPGKV----- bmy_05995T0/1-862 SGGAVRGKSC RSWSGDGRTG APSGAAGPAG RTAAAAAAAT SPGERSSWGR BACU002407/1-791 ---------- ---------- ---------- ----TVTLKE DPGKV----- ENSTTRP00000016445/1-775 ---------- ---------- ---------- ----TVTLKE DPGKV----- 901 950 ENSBTAP00000025191/1-774 ------- ENSP00000307567/1-775 ------- bmy_05995T0/1-862 DVAGLRA BACU002407/1-791 ------- ENSTTRP00000016445/1-775 -------