KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:24 2014 Check: 00 .. Name: ENSP00000394700/1-645 Len: 645 Check: 6903 Weight: 1.00 Name: ENSBTAP00000025211/1-641 Len: 645 Check: 4747 Weight: 1.00 Name: ENSTTRP00000013264/1-624 Len: 645 Check: 1421 Weight: 1.00 Name: bmy_17195T0/1-347 Len: 645 Check: 4499 Weight: 1.00 Name: BACU015404/1-585 Len: 645 Check: 848 Weight: 1.00 // 1 50 ENSP00000394700/1-645 MVLAMASQDV QNFFQPFSSW ISRVYEALQQ AGDMLSASLV NISKQDSKLS ENSBTAP00000025211/1-641 MLLAMASQDA QNFFQPLSSW ISRVYEALQQ AGYTLSASLA NFRKQDSKLS ENSTTRP00000013264/1-624 MLLTMASQDA QNLFQPLSSW IYRVYEALQQ AGDTLSALLV NFNKQDSKLS bmy_17195T0/1-347 ---------- ---------- ---------- ---------- -------MIS BACU015404/1-585 MLLTMASQDA QNLFQPLSSW ISRVYEALQQ AGDTLSALLV NFNKQDSKLS 51 100 ENSP00000394700/1-645 DKLDQDLDNI QIQETYFEDE EQDNDWSQED ANSLFLEVDH FSCCNSDLQD ENSBTAP00000025211/1-641 DTLDQDLNDI QIPETGFEDE EQGTDQRQEN TDTLFLEVDH FSYCNSDFQD ENSTTRP00000013264/1-624 DKLDQDLDDI QIQETYFEDE EQ-SNWSQED INSLFLEVDH FSCCNSDLQD bmy_17195T0/1-347 DSLKKN---- ---------- ---------- ---------- ---------- BACU015404/1-585 DKLDQDLDDI QIQETYFEDE EQ-SNWSQED INSLFLEVDH FSCCNSDLQD 101 150 ENSP00000394700/1-645 SAQNSSPSLS QHAKDSCSTM SQWPNWASDD RKLPHVLSSI AEEEHHLEKQ ENSBTAP00000025211/1-641 FGQSSSPRLS QH---SCSIM TLWPSQTLDA QKPPHVL-SI VEEEHHLEKQ ENSTTRP00000013264/1-624 SAQSSRPRLS QHAKDACSVV TQWPSQTLDD QKPPHVLSSI AEEEHHLEKQ bmy_17195T0/1-347 ---------- ---------- ---------- ---------- ---------- BACU015404/1-585 SAPSSSPRLS QHAKDSCSIV TQWPNQTLDD QKPPHVLSSM AEEEHHLEKQ 151 200 ENSP00000394700/1-645 RSGLQHGFDS QLPGTLETVN GKKQVNSFGD DEELSTSSDS DEEVIKQFEI ENSBTAP00000025211/1-641 RNSLQHGFDS HLSDILESVN GKKQVNSFGD DEELSTSSDN DEEVIKQFEI ENSTTRP00000013264/1-624 RSGLQQGFDS HLSGILENIN GKMQVNTFGV DEKLPTSSDS DEEVIKQFEI bmy_17195T0/1-347 ---------- ---------Q GPHTVNNFGD DEELPTSSDS DEEVIKQFEI BACU015404/1-585 RSGLQQGFDS HLSGILENVN GKMQVNNFGD DEELPTSSDS DEEVIKQFEI 201 250 ENSP00000394700/1-645 SVSRSQSFRS VTSEKGKQTG LEQKPKFSRS LLTHGEDGTE VSACEDLDGA ENSBTAP00000025211/1-641 SVSRSQSFRL GASEKGKQTG LEHKPKPSHC LSTHKEDSTG VSTCKGLDGA ENSTTRP00000013264/1-624 SVPRSQSFRS GASEKGKQTG LEHKPKPSRW LSTHEEASTE VSACKGLDGA bmy_17195T0/1-347 SVSRSQSFRS GASQRGKQTG LERKPKPSRW LSTHEEASTE VSACAGLDGA BACU015404/1-585 SVSRSQSYRS GASQRGKQTG LERKPKPSRW LSTHEEASTE VSACAGLDGA 251 300 ENSP00000394700/1-645 SQRRYSENLS YGEDDHIPAH SQSPCERGDA KHHGTSHQES SVVQSLRRQS ENSBTAP00000025211/1-641 SQLTYSENLS YGEDDPVSAH SQSTCELGGT RHHGVPPGET SVVHSLSRQS ENSTTRP00000013264/1-624 SQLTYSENLS YGEDDPISAH SQSPREVGDT RHHGTSPQET RVVRSLSRQS bmy_17195T0/1-347 SQLTYSENLP YGEGDPISAL SQSPCEVGDT RHHGTSPQET SAVCSLSRQC BACU015404/1-585 SQLTYSENLP YGEGDPISAL SQSPCEVGDT RHHGTPRQET SAARSLSRQC 301 350 ENSP00000394700/1-645 TEGSLEMETA FNSRGFEDSY ATDSSSMWSP EEQDRTNLQV PSGVSEPISK ENSBTAP00000025211/1-641 TEGSLEMETA FNNRGFEDSY ATDSSSVWSP EEQDGTNFQV PPGVPEPISK ENSTTRP00000013264/1-624 TQGSLEMETA F--------- ---------- -EQDATNFQV PSGVPEPISK bmy_17195T0/1-347 TQGSLEMETA FNNRRFEDSY DAGSSSV--- ---------- ---------- BACU015404/1-585 TQGSLEMETA FNNRRFEDSY AAGSSSVWSP EEQDGTNFQV PPGVPEPISK 351 400 ENSP00000394700/1-645 CGDLDVIFEY RAASQKLTVT IVRAQGLPDK DRSGVNSWQV HVVLLPGKKH ENSBTAP00000025211/1-641 CGDLDVIFEY RAASQKLTVT IVRAQGLPDK DRSGVNSWQV HVVLLPTKKQ ENSTTRP00000013264/1-624 CGGLDVIFEY RAASQKLTVT IVRAQGLPDK DRSGINSWQV HVVLLPSKKQ bmy_17195T0/1-347 ---------- -AASQKLTVT IVRAQGLPDK DRSGISSWQV HVVLLPSKKQ BACU015404/1-585 CGGLDVIFEY RAASQKLTVT VVRAQGLPDK DRSGISSWQV HVVLLPSKKQ 401 450 ENSP00000394700/1-645 RGRTNIQRGP NPVFREKVTF AKLEPRDVAA CAVRFRLYAA RKMTRERMMG ENSBTAP00000025211/1-641 RGRTSIQRGS NPIFKEKVTF AKLEPRDVAA CAVRFRLYAA RKMTRERMMG ENSTTRP00000013264/1-624 RGRTNIQRGP NPVFKEKVTF AKLEPRDVAA CAVRFRLYAT RKMTWERMMG bmy_17195T0/1-347 RGRTNIQRGP NPIFKEKVTF AKLEPRDVAS CAVRFRLYAT RKMTWERMMG BACU015404/1-585 RGRTNIQRGP NPVFKEKVTF AKLEPRDVPA CAVRFRLCAT RKMTWERMMG 451 500 ENSP00000394700/1-645 EKLFYLSHLH PEGEMKVTLV LEPRSNISSG GSPLSPSAVS HSDSTSSTQS ENSBTAP00000025211/1-641 ERLFYLSHLH QDGEMKVTLV LEPRSNISSG ESPLSPSAVS HSDSGSSTQS ENSTTRP00000013264/1-624 ERLFYLSHLH QEGEMKVTLV LEPRSNIISG ESPLSPSAVS HSDSASSTQS bmy_17195T0/1-347 ERLFYLSHLH QEGEMKVTLV LEPRSNIRSG ESPLSPSAVS HSDSASSTQS BACU015404/1-585 ERLFYLSRLH QEGEVKVTLV LEPRSNISSG ESPLSPSAVS HSDSASSTQS 501 550 ENSP00000394700/1-645 LSHGGAPELL VGLSYNATTG RLSVEMIKGS HFRNLAVNRA PDTYGKLFLL ENSBTAP00000025211/1-641 LSHGGAPELL VGLSYNATTG RLSVEMIKGS HFRNLAVNRA PDTYGKLFLF ENSTTRP00000013264/1-624 LSHGGAPELL VGLSYNATTG RLSVEMIKGS HFRNLAVNRV PDTYGKLFLL bmy_17195T0/1-347 LSHGGAPELL VGLSYNATTG RLSVEMIKGS HFRNLAVNRV P--------- BACU015404/1-585 LSHGGAPELL VGLSYNATTG RLSVEMIKGS HFRNLAVNRV PDTYGKLFLL 551 600 ENSP00000394700/1-645 NSVGQEMSRC KTSIRRGQPN PVYKETFVFQ VALFQLSDVT LMISVYNRRT ENSBTAP00000025211/1-641 NSVGQEMSRC KTSIRRGQPN PVYKETFVFQ VALFQLSDVT LMISVYNRRT ENSTTRP00000013264/1-624 SSVGQEMSRC KTSIRRGQPN PVYKETFVFQ VALFQLSDVT LVISVYNRRT bmy_17195T0/1-347 ---------- ---------- ---------- ---------- ---------- BACU015404/1-585 SSVSQEMSRC KTSIRRGQPN PVYKETFVFQ EA-------- --------RD 601 650 ENSP00000394700/1-645 MKRKEMIGWI ALGQNSSGEE EQDHWEEMKE TKGQQICRWH TLLES ENSBTAP00000025211/1-641 MKRKEMIGWI ALGQNNSGEE ERDHWEEMKE TKGQQVCRWH TLLES ENSTTRP00000013264/1-624 MKRKEMIGWI ALGQNSSGGE EQDHWEEMKE TKGQQVCRWH TLLES bmy_17195T0/1-347 ---------- ---------- ---------- ---------- ----- BACU015404/1-585 LE-------- ---------- ---------- ---------- -----