KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:25 2014 Check: 00 .. Name: bmy_13175T0/1-516 Len: 1115 Check: 7759 Weight: 1.00 Name: ENSP00000387739/1-956 Len: 1115 Check: 9973 Weight: 1.00 Name: ENSBTAP00000025212/1-960 Len: 1115 Check: 4690 Weight: 1.00 Name: BACU011089/1-1031 Len: 1115 Check: 8747 Weight: 1.00 Name: ENSTTRP00000015582/1-958 Len: 1115 Check: 7171 Weight: 1.00 // 1 50 bmy_13175T0/1-516 MDSGSDLRER ISYSGGETDE QVTRILAVPL ASPQETHFIF TLIHFSFNNE ENSP00000387739/1-956 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025212/1-960 ---------- ---------- ---------- ---------- ---------- BACU011089/1-1031 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000015582/1-958 ---------- ---------- ---------- ---------- ---------- 51 100 bmy_13175T0/1-516 AFVIPTMEGG KKVVFRVTLP KGLWTVTKKK TDSNRATGVP NKDPALEQEG ENSP00000387739/1-956 ---------- ---MWRAKLR RGT------- ---------- ---------- ENSBTAP00000025212/1-960 ---------- ---MLMLHVK RNT------- ---------- ---------- BACU011089/1-1031 -MPFVEKGRG ALEDWQETQV AGI------- ---------- ---------- ENSTTRP00000015582/1-958 ---------- ---MWRAKLR RGT------- ---------- ---------- 101 150 bmy_13175T0/1-516 KDYVHSKHAY DTCPPPACYS PSSPIQILED PNYFFPDFQL YPGRHEAS-L ENSP00000387739/1-956 ---CEPAVK- --GSPSACYS PSSPVQVLED STYFSPDFQL YSGRHETSAL ENSBTAP00000025212/1-960 ---CEHTFK- --CPPPACYS PSSPVQILED PSYFFPDFQL YPGRHEAS-L BACU011089/1-1031 ---VTDKDQI RFSPPPACYN PSSPIQILED PNYFFPDFQL YSGRHEAS-L ENSTTRP00000015582/1-958 ---CESAVK- --GPPPACYS PSSPIQILED PNYFFPDFQL YSGRHEAS-L 151 200 bmy_13175T0/1-516 TVEANSSIRE KVVEDPLCNF HPPNFPRISE VEMRGSEDAA AGTVLQRLIQ ENSP00000387739/1-956 TVEATSSIRE KVVEDPLCNF HSPNFLRISE VEMRGSEDAA AGTVLQRLIQ ENSBTAP00000025212/1-960 TVEANSSIRE KVVEDPLCNF HPPNFPRIPE VEMRGSEDAA AGTVLQRLIQ BACU011089/1-1031 TVEANSSIRE KVVEDPLCNF HPPNFPRISE VEMRGSEDAA AGTVLQRLIQ ENSTTRP00000015582/1-958 TVEANSSIRE KVVEDPLCNL HPPNFLRISE VEMRGSEDAA AGTVLQRLIQ 201 250 bmy_13175T0/1-516 EQLRYGTPTE NMNLLAIQHQ ATGSAGPAHP TNNFSSTENL TQEDPQMVYQ ENSP00000387739/1-956 EQLRYGTPTE NMNLLAIQHQ ATGSAGPAHP TNNFSSTENL TQEDPQMVYQ ENSBTAP00000025212/1-960 EQLRYGTPTE NMNLLAIQHQ ATGSAGPAHP T-NFSSTENL AQEDPQMVYQ BACU011089/1-1031 EQLRYGTPTE NMNLLAIQHQ ATGSAGPAHP TNNFSSTENL TQEDPQMVYQ ENSTTRP00000015582/1-958 EQLRYGTPTE NMNLLAIQHQ ATGSAGPAHP TNNFSSTENL TQEDPQMVYQ 251 300 bmy_13175T0/1-516 SARQEPQGQE HQVDNTVMEK QVRSTQPQQN TEELPTYEEA KAQSQFFRGQ ENSP00000387739/1-956 SARQEPQGQE HQVDNTVMEK QVRSTQPQQN NEELPTYEEA KAQSQFFRGQ ENSBTAP00000025212/1-960 SARQEPQGQE HQVDNTVMEK QVRSAQPQQN NEELPTYEEA KAQSQFFRGQ BACU011089/1-1031 SARQEPQGQE HQVDNTVMEK QVRSTQPQQN NEELPTYEEA KAQSQFFRGQ ENSTTRP00000015582/1-958 SARQEPQGQE HQVDNTVMEK QVRSTQPQQN NEELPTYEEA KAQSQFFRGQ 301 350 bmy_13175T0/1-516 QPPPP-QQQQ QQGAVGHGYY MAGGASQKAR TEGRPTVNRA NSGQAHKDEA ENSP00000387739/1-956 Q-----QQQQ QQGAVGHGYY MAGGTSQKSR TEGRPTVNRA NSGQAHKDEA ENSBTAP00000025212/1-960 QPPPP-PPQQ QPGAVGHSYY MAGGASQKAR TEGRPTVSRA NSGQAHKDEA BACU011089/1-1031 QPPPPQQQQQ QQGAVGHGYY MAGGASQKAR TEGRPTVNRA NSGQAHKDEA ENSTTRP00000015582/1-958 QPPPP--QQQ QQGAVGHGYY MAGGASQKAR TEGRPTVNRA NSGQAHKDEA 351 400 bmy_13175T0/1-516 LKELKQGHVR SLSERIMQLS LERNGAKQHL PGPGTGKGFK AGGGPSPAQP ENSP00000387739/1-956 LKELKQGHVR SLSERIMQLS LERNGAKQHL PGSGNGKGFK VGGGPSPAQP ENSBTAP00000025212/1-960 LKELKQGHVR SLSERIMQLS LERNGAKQHL PGPGNGKAFK AGGGPSPAQP BACU011089/1-1031 LKELKQGHVR SLSERIMQLS LERKGAKQHL PGPGTGKGFK AGGGPSPAQP ENSTTRP00000015582/1-958 LKELKQGHVR SLSERIMQLS LERNGAKQHL PGPGTGKGFK AGGGPSPAQP 401 450 bmy_13175T0/1-516 AAKVLDPRGP PPEYPFKTKQ MMSPVGKTQE HGLFYSDQHP GMLHEMVKPY ENSP00000387739/1-956 AGKVLDPRGP PPEYPFKTKQ MMSPVSKTQE HGLFYGDQHP GMLHEMVKPY ENSBTAP00000025212/1-960 AAKMLDPRGP PPEYPFKTKQ MVSPVSKTQE HGLFYSDQHP GLLHEMVKPY BACU011089/1-1031 AAKVLDPRGP PPEYPFKTKQ MMSPVGKTQE HGLFYSDQHP GMHHEMVKPY ENSTTRP00000015582/1-958 AAKVLDPRGP PPEYPFKTKQ MMSPVGKTQE HGLFYSDQHP GMLHEMVKPY 451 500 bmy_13175T0/1-516 PAPQPARTEV AVLRYQPPPE YGYRDR---- ---------- ---------- ENSP00000387739/1-956 PAPQPVRTDV AVLRYQPPPE YGVTSRPCQL PFPSTMQQHS PMSSQTSSAS ENSBTAP00000025212/1-960 PAPQPARTEV AVLRYQPPPE YGVTSRPCQL PFPSTAQQHS PVSSQNSSVS BACU011089/1-1031 AAPQPARTEV AVLRYQPPPE YGVTSRPCQL PFPSTVQQHS PMSSQNSSVS ENSTTRP00000015582/1-958 PAPQ-ARTEV AVLRYQPPPE YGVTSRPCQL PFPSTVQQHS PMSSQNSSVS 501 550 bmy_13175T0/1-516 ---------- ---------- ---------- ---------H HAHRIFHILV ENSP00000387739/1-956 GPLHSVSLPL PLPMALGAPQ PPPAASPSQQ LGPDAFAIVE RAQQMVEILT ENSBTAP00000025212/1-960 GPLHSVPLPL APPMALGAAP PPPAASPSQQ LGPDAFAIVE RAQQMVEILT BACU011089/1-1031 GPLHSVSLPP PPPMTLAASQ PTPAASPSQQ LGPDAFAIVE RAQQMVEILT ENSTTRP00000015582/1-958 GPLHSVSLPP PPPMTLAASQ PTPAASPSQQ LGPDAFAIVE RAQQMVEILT 551 600 bmy_13175T0/1-516 ---------- --YF------ ---------- ---------- ---------- ENSP00000387739/1-956 EENRVLHQEL QGYYDNADKL HK-------- ---------- ---------- ENSBTAP00000025212/1-960 EENRVLHQEL QGYYDNADKL HK-------- ---------- ---------- BACU011089/1-1031 EENRVLHQEL QGYYDNTDKL HKGLTLKAKV SRKTSSESEI TGSDFMMTHM ENSTTRP00000015582/1-958 EENRVLHQEL QGYYDNTDKL HK-------- ---------- ---------- 601 650 bmy_13175T0/1-516 -------FR- ---------- ---------- ---------- -------HHY ENSP00000387739/1-956 -------FEK ELQRISEAYE SLVKSTTKRE SLDKAMRNKL EGEIRRLHDF ENSBTAP00000025212/1-960 -------FEK ELQRISEAYE SLVKSTTKRE SLDKAMRNKL EGEIRRLHDF BACU011089/1-1031 PAPEMLQFEK ELQRISEAYE SLVKSTTKRE SLDKAMRNKL EGEIRRLHDF ENSTTRP00000015582/1-958 -------FEK ELQRISEAYE SLVKSTTKRE SLDKAMRNKL EGEIRRLHDF 651 700 bmy_13175T0/1-516 ---------- ---------- ---------- ---------- --------LE ENSP00000387739/1-956 NRDLR---DR LETANRQLSS REYEGHEDKA AEGHYASQNK EFLKEKEKLE ENSBTAP00000025212/1-960 NRDLR---DR LETANRQLSS REYDGHEDRA AEGLYASQNK EFLKEKEKLE BACU011089/1-1031 NRDLRGMSNR LETANRQLSS REYDGHEDRA AEGLYASQNK EFLKEKEKLE ENSTTRP00000015582/1-958 NRDLRG--KF THTANRQLSS REYDGHEDRA AEGLYASQNK EFLKEKEKLE 701 750 bmy_13175T0/1-516 MKL------- ---------- ---------- ---------- ---------- ENSP00000387739/1-956 MELAAVRTAS EDHRRHIEIL DQALSNAQAR VIKLEEELRE KQAYVEKVEK ENSBTAP00000025212/1-960 MELAAVRTAS EDHRRHIEIL DQALSNAQAR VIKLEEELRE KQAYVEKVEK BACU011089/1-1031 MELAAVRTAS EDHRRHIEIL DQALSNAQAR VIKLEEELRE KQAYVEKVEK ENSTTRP00000015582/1-958 MELAAVRTAS EDHRRHIEIL DQALSNAQAR VIKLEEELRE KQAYVEKVEK 751 800 bmy_13175T0/1-516 ---------- ---------- ---------- ---------- ---------- ENSP00000387739/1-956 LQQALTQLQS ACEKREQMER RLRTWLEREL DALRTQQKHG ---------N ENSBTAP00000025212/1-960 LQQALTQLQS ACEKREQMER RLRTWLEREL DALRTQQKHG ---------N BACU011089/1-1031 LQQALTQLQS ACEKREQMER RLRTWLEREL DALRTQQHQD VTSFASPETR ENSTTRP00000015582/1-958 LQQALTQLQS ACEKREQMER RLRTWLEREL DALRTQQKHG ---------N 801 850 bmy_13175T0/1-516 ---------L GGPGS----- ---------- ---------- ---------- ENSP00000387739/1-956 GQPANMPE-Y NAPAL----- ---LELVREK EERILALEAD MTKWEQKYLE ENSBTAP00000025212/1-960 SQPASLPE-Y NAPAL----- ---MELVREK EERILALEAD MTKWEQKYVE BACU011089/1-1031 KRPASQPAGI QCPGPHGTRK GEGRAXXXXX EERILALEAD MTKWEQKYVE ENSTTRP00000015582/1-958 GQPASLPE-Y NAPAL----- ---MELVREK EERILALEAD MTKWEQKYVE 851 900 bmy_13175T0/1-516 ---------- ---------- ---------- ---------- ---------- ENSP00000387739/1-956 ESTIRHFAMN AAATAAAERD TTIINHSRNG SYGESSLEAH IWQEEEEVVQ ENSBTAP00000025212/1-960 ESAIRHFAMS AAATAAAERD TTIVNHSRNG SYGESSLEAH IWQEEEEVVQ BACU011089/1-1031 ESAIRHFAMN AAATAAAERD TTIINHSRNG SYGESSLEAH IWQEEEEVVQ ENSTTRP00000015582/1-958 ESAIRHFAMN AAATAAAERD TTIINHSRNG SYGESSLEAH IWQEEGEVMQ 901 950 bmy_13175T0/1-516 ---------- ---------- ---------- ---------- ---------- ENSP00000387739/1-956 ANRRCQDMEY TIKNLHAKII EKDAMIKVLQ QRSRKDAGKT DSSSLRPARS ENSBTAP00000025212/1-960 ATRRCQDMEY TIKNLHAKII EKDAMIKVLQ QRSRKDAGKT DSSSLRPARS BACU011089/1-1031 ATRRCQDMEY TIKNLHAKII EKDAMIKVLQ QRSRKDAGKT DSSSLRPARS ENSTTRP00000015582/1-958 ATRRCQDMEY TIKNLHAKII EKDAMIKVLQ QRSRKDAGKT DSSSLRPARS 951 1000 bmy_13175T0/1-516 ---------- ---------- ---------- ---------- ---------- ENSP00000387739/1-956 VPSIAAATGT HSRQTSLTSS QLAEEKKEEK TWKGSI--GL LLGKEHHEHA ENSBTAP00000025212/1-960 VPSIAAATGT HSRQTSLTSS QLAEERKEEK TWKGSIATGL LLGKEHNDHA BACU011089/1-1031 VPSIAAATGT HSRQTSLTSS QLAEERKEEK TWKGSI--GL LLGKEPHEHT ENSTTRP00000015582/1-958 VPSIAAATGT HSRQTSLTSS QLAEERKEEK TWKGSI--GL LLGKEPHEHA 1001 1050 bmy_13175T0/1-516 ---------- ---------- ---------- ---------- ---------- ENSP00000387739/1-956 SAPLLPPPPT SALSSIASTT AASSAHAKTG SKDSSTQTDK SAELFWPSMA ENSBTAP00000025212/1-960 STPLLPTPSA ATLSPPTPGT SASSAHAKTG SKDSSTQTDK SAELFWPGVA BACU011089/1-1031 STPLLPTPPA TALSPAALAT SASSAHAKTG SKDSSTQTDK SAELFWPSVA ENSTTRP00000015582/1-958 SAPVLPTPPA TALFPAALVT SASSAHAKTG SKDSSTQTDK SAELFWPGVA 1051 1100 bmy_13175T0/1-516 ---------- ---------- PFSPDTSEDL GAH------- ---------- ENSP00000387739/1-956 SLPSRGRLST TPAHSPVLKH PAAKGTAEKL ENSPGHGKSP DHRGRVSSLL ENSBTAP00000025212/1-960 SLPTRSRLSG TPSNSPVLKH PAAKGTAEKL ENSPGHGKSP DHKGRVSNLL BACU011089/1-1031 SLPTRGRLSG TPSNSPVLKH PAAKGTAEKL ENSPGHGKSP DHKGRVSSLL ENSTTRP00000015582/1-958 SLPTRGRLSG TPSNSPVLKH PAAKGTAEKL ENSPGHGKSP DHKGRVSGLL 1101 1150 bmy_13175T0/1-516 ---------- ----- ENSP00000387739/1-956 HKPEFPDGEM MEVLI ENSBTAP00000025212/1-960 HKPEFPDGEM MEVLI BACU011089/1-1031 HKPEFPDGEM MEVLI ENSTTRP00000015582/1-958 HKPEFPDGEM MEVLI