KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 4 Type: P Thu May 15 17:25:25 2014 Check: 00 .. Name: ENSP00000335040/1-697 Len: 709 Check: 5619 Weight: 1.00 Name: ENSBTAP00000025214/1-669 Len: 709 Check: 4286 Weight: 1.00 Name: bmy_02600T0/1-538 Len: 709 Check: 5915 Weight: 1.00 Name: ENSTTRP00000002342/1-683 Len: 709 Check: 2221 Weight: 1.00 // 1 50 ENSP00000335040/1-697 MGPDRKEVPL S-RGTQAVVV GKGRGA---- PGDDSSMGGR PSSPLDKQQR ENSBTAP00000025214/1-669 -------SP- ---------- GDG------- ----SRMGGR PSSPLDKQQQ bmy_02600T0/1-538 --MELEHVF- --WGNFGVRI GNRKWLLCLF CPHLRQVGGD LIQP-----R ENSTTRP00000002342/1-683 --AERKQVPL SGWGAVGRR- GRG------- AGHSSRMGGR PSSPLDKRQQ 51 100 ENSP00000335040/1-697 QHL---RGQV DTLLRNFLPC YRGQLAASVL RQISRELGPQ EPTGSQLLRS ENSBTAP00000025214/1-669 QYL---KGQV DTLLRNFLPC YRGQLAASVL RQISRELGPQ EPARCQLLHS bmy_02600T0/1-538 HHLLVPAGQV DTLLRNFLPC YRGQLAASVL WQISRELGPQ EPAGCQLLHS ENSTTRP00000002342/1-683 QHL---RGQV DTLLRNFLPC YRGQLAASVL WQISRELGPQ EPAGCQLLHS 101 150 ENSP00000335040/1-697 KKLPRVREHR GPLTQLRGHP PRWQPIFCVL RGDGRLEWFS HKEEYENGGH ENSBTAP00000025214/1-669 KKLPRVREHR GPLTQLWGHP PQWQPSFCVL HGDGRLEWFS HREEYENGDR bmy_02600T0/1-538 KKLPRVREHR GPLTQLQGHP PQWQPIFCVL RGDGRLEWFS HRE------- ENSTTRP00000002342/1-683 KKLPRVREHR GPLTQLQGHP PQWQPIFCVL RGDGRLEWFR HREEYENGDR 151 200 ENSP00000335040/1-697 CLGSTALTGY TLLTSQREYL RLLDALCPES LGDHTQEEPD SLLEVPVSFP ENSBTAP00000025214/1-669 PLGSTTLTGY TVLTSQREYL CLLDALCPDS SRDHTQEEPD PLLEMPVSFP bmy_02600T0/1-538 ---------- ---------- ---------- VRHHTQEEPD PLLEMPVSFP ENSTTRP00000002342/1-683 PLGSVVLTGY TVLTSQSEYL HLLDTLCPEP SGHHAQEEPD PLLEMPVSFP 201 250 ENSP00000335040/1-697 LFLQHPFRRH LCFSAATREA QHAWRLALQG GI-RLQGIVL QRSQAPAARA ENSBTAP00000025214/1-669 LFLQHPFRQH LCFSAATGEA QRAWRLALQG GIRRVAPSVL QRSQAPAARA bmy_02600T0/1-538 LFLQHPFRRH LCFSAATAEA QRAWRLALQG GI-RLRGTVL QRSQAPAARA ENSTTRP00000002342/1-683 LFLQHPFRRH LCFSAATAEV QRAWRLALQG GI-RLRGTVL QRSQAPAARA 251 300 ENSP00000335040/1-697 FLDAVRLYRQ HQGHFGDDDV TLGSDAEVLT AVLMREQLPA LRAQTLPGLR ENSBTAP00000025214/1-669 FLDAIRLYRQ QHGQFGNDDV TLGSDAEVLT SVLIQELLPA LRAQTLPGLR bmy_02600T0/1-538 FLDAIRLYRQ QQGHFGNDDV TLGSDAEVLT AVLMRELLPA LRAQTLPGLR ENSTTRP00000002342/1-683 FLDAIRLYRQ QQGHFGDDDV TLGSDAEVLT AVLMRELLPA LRAQTLPGLR 301 350 ENSP00000335040/1-697 GAGRARAWAW TELLDAVHAA VLAGASAGLC AFQPEKDELL ASLEKTIRPD ENSBTAP00000025214/1-669 GAGRARAWAW TKLLDAVHAA VLAGATAGLR AFQPEKEELL AALEKTIRPD bmy_02600T0/1-538 GAGRARAWAW AKLLDAVHAA VLAGASTGLR AFQPEKEELL AALEKTIRPD ENSTTRP00000002342/1-683 GAGRARAWAW AKLLDAVHAA VLAGASTGLR AFQPEKEELL AALEKTIRPD 351 400 ENSP00000335040/1-697 VDQLLRQRAR VAGRLRTDIR GPLESCLRRE VDPQLPRVVQ TLLRTVEASL ENSBTAP00000025214/1-669 VDQMLLLRAR VASRLKAEVQ GPLESCLRGK VDAQLPRITQ TLLSTVEAEL bmy_02600T0/1-538 VDHMLKLRER VLGRLQANVQ GPLESCLRRK VDAELPRVTQ ALLSTVEAEL ENSTTRP00000002342/1-683 VDQMLKLRER VLGRLQANVQ GPLESCLRRK VDAQLPRVTQ TLLSTVEAEL 401 450 ENSP00000335040/1-697 EAVRTLLAQG MDRLSHRLRQ SPSGTRLRRE VYSFGEMPWD LALMQTCYRE ENSBTAP00000025214/1-669 AAVRTLLTQG MDRLFRLLRG SSSSTQLRKE VYSFGEMPWD PELMQICYRE bmy_02600T0/1-538 AAVQTLLTQG MDRLSRHLRG SPSSTRLRKE ---------- ---------- ENSTTRP00000002342/1-683 TAVQTLLTQG MDRLSRHLRG SPSSTRLRKE VYSFGEMPWD PELMQTCYRE 451 500 ENSP00000335040/1-697 AERSRGRLGQ LAAPFGFLGM QSLVFGAQDL AQQLMADAVA TFLQLADQCL ENSBTAP00000025214/1-669 AKRSRGQLGQ LAALFGFFGI QSLVFGAQDL AQQLMADAVT TFLQLADQCL bmy_02600T0/1-538 ---------- ---------- ---------- ---LMADAVA TFLQLADQCL ENSTTRP00000002342/1-683 AERSRGRLGQ LAEPFGFFGT QSLVFGAQDL AQQLMADAVA TFLQLADQCL 501 550 ENSP00000335040/1-697 TTALNCDQAA QRLERVRGRV LKKFKSDSGL AQRRFIRGWG LCIFLPFVLS ENSBTAP00000025214/1-669 TTTLDCDQAT QQLEKVRGRV LKKFQSDSSS ARRTFIHSWL LCIFLPFVLS bmy_02600T0/1-538 TTALDCDQAA QQLEKVRGRV LKKFQSDSGS ARRRFIHGWL LCIFLPFVLS ENSTTRP00000002342/1-683 TTALDCDQAA QQLEKVRGRV LKKFQSDSGS ARRRFIHGWL LCIFLPFVLS 551 600 ENSP00000335040/1-697 QLEPGCKKEL PEFEGDVLAV GSQALTTEGI YEDVIRGCLL QRIDQELKKT ENSBTAP00000025214/1-669 QLEPSCKAEL LKFEGDVLAV GSPALTIEGI YEDVVRGFLL QRINRELKKA bmy_02600T0/1-538 QLELSCKAEL PEFEGDVLAV GSPALTIEGI YEDVIRGVLL QRINRELKKA ENSTTRP00000002342/1-683 QLELSCKAEL PEFEGDVLAV GSPALTIEGI YEDVIRGVLL QRINRELKKA 601 650 ENSP00000335040/1-697 LGANDVSCTL DGCLEVPWEQ EGAAPNLNLV SSFLAGRQAF TDFLCLPAKS ENSBTAP00000025214/1-669 LGARNISCIL DDCSEEPWDQ AEAAPNLNLV SSFPADIRAF TGF-PLPAR- bmy_02600T0/1-538 LGASNMSCTL DGCSELPWDQ AETGEDL--- ---------- ---------- ENSTTRP00000002342/1-683 LGASNMSCTL DGCSELPWDQ GETAPNLTLV SSFPAESRAF TAFLCLPEKP 651 700 ENSP00000335040/1-697 SANWILAAS- -LLSCSCFRS GFHRDSRVFL -VQLAEGLSH SLETVSSHSV ENSBTAP00000025214/1-669 SIHWRLAASA HHKPSSCFRR -----QSLFF SVQLSEG-GH ADSLIFSHSA bmy_02600T0/1-538 TGSWPMPVN- ---------- ---------- ----CQG--- ---------- ENSTTRP00000002342/1-683 SVHWSLAAS- HHKTSSCFRS RFWEGSPVFF SVQLSEG-GN AHSMV----- 701 750 ENSP00000335040/1-697 WSFRPTPRQ ENSBTAP00000025214/1-669 LECSSSPRR bmy_02600T0/1-538 --------- ENSTTRP00000002342/1-683 -----SPRE