KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:26 2014 Check: 00 .. Name: ENSP00000366898/1-669 Len: 716 Check: 3892 Weight: 1.00 Name: BACU002132/1-647 Len: 716 Check: 1343 Weight: 1.00 Name: ENSBTAP00000025217/1-669 Len: 716 Check: 5823 Weight: 1.00 Name: bmy_06581T0/1-607 Len: 716 Check: 1283 Weight: 1.00 Name: ENSTTRP00000001516/1-667 Len: 716 Check: 6867 Weight: 1.00 // 1 50 ENSP00000366898/1-669 ---------- MALGLQRA-- -------RST TELRKEKSRD AARSRRSQET BACU002132/1-647 ---------- MALGLQRV-- -------RSS TELRKEKSRD AARSRRSQET ENSBTAP00000025217/1-669 ---------- MALGLQRA-- -------RSS TELRKEKSRD AARSRRSQET bmy_06581T0/1-607 MWQQPTYLSH PTLSLPGAPP VNAAHARRSS TELRKEKSRD AARSRRSQET ENSTTRP00000001516/1-667 ---------- MALGLQRA-- -------RSS TELRKEKSRD AARSRRSQET 51 100 ENSP00000366898/1-669 EVLYQLAHTL PFARGVSAHL DKASIMRLTI SYLRMHRLCA A--------- BACU002132/1-647 EVLYQLAHTL PFARGVSAHL DKASIMRLTI SYLRMHQLCA A--------- ENSBTAP00000025217/1-669 EVLYQLAHTL PFARGVSAHL DKASIMRLTI SYLRMHRLCT A--------- bmy_06581T0/1-607 EVLYQLAHTL PFARGVSAHL DKASIMRLTI SYLRMH-LCA AVKESRGRLA ENSTTRP00000001516/1-667 EVLYQLAHTL PFARGVSAHL DKASIMRLTI SYLRMHQLCA A--------- 101 150 ENSP00000366898/1-669 ---------- --------GE WNQVGAGGEP LDACYLKALE GFVMVLTAEG BACU002132/1-647 ---------- --------GE WNQVGAGGEP LDACYLKALE GFVMVLTAEG ENSBTAP00000025217/1-669 ---------- --------GE WNQVGAGGEP LDACYLKALE GFVMVLTAEG bmy_06581T0/1-607 RVGLPLTRDA PSILVRTPGE WNQVGAGGEP LDACYLKALE GFVM------ ENSTTRP00000001516/1-667 ---------- --------GE WNQVGAGGEP LDACYLKALE GFVMVLTAEG 151 200 ENSP00000366898/1-669 DMAYLSENVS KHLGLSQLEL IGHSIFDFIH PCDQEELQDA LTPQQTLSRR BACU002132/1-647 DMAYLSENVS KHLGLSQLEL IGHSIFDFIH PCDQEELQDA LTPRQSLSKK ENSBTAP00000025217/1-669 DMAYLSENVS KHLGLSQLEL IGHNIFDFIH PCDQEELQDA LTPRQSLSKK bmy_06581T0/1-607 ---------- -------LEL IGHSIFDFIH PCDQEELQDA LTPRQSLSKK ENSTTRP00000001516/1-667 DMAYLSENVS KHLGLSQLEL IGHSIFDFVH PCDQEELQDA LTPRQSLSKK 201 250 ENSP00000366898/1-669 KVEAPTERCF SLRMKSTLTS RGRTLNLKAA TWKVLNCSGH MRAYKPPAQT BACU002132/1-647 KPEAPTERCF SLRMKSTLTS RGRTLNLKAA TWKVLHCSGH MRAYKPPAQS ENSBTAP00000025217/1-669 KPEAPTERCF SLRMKSTLSS RGRTLNLKAA TWKVLHCSGH MRVYKPPAQT bmy_06581T0/1-607 KPEAPTERCF SLRMKSTLTS RGRTLNLKAA TWKVLHCSGH MRAYKPPAQS ENSTTRP00000001516/1-667 KPEAPTERCF SLRMKSTLTS RGRTLNLKAA TWKVLHCSGH MRAYKPPAQS 251 300 ENSP00000366898/1-669 SPAGSPDSEP PLQCLVLICE AIPHPGSLEP PLGRGAFLSR HSLDMKFTYC BACU002132/1-647 SPAGSPNLEP PLQCLVLICE AIPHPGSLEP PLGRGAFLSR HSLDMKFTYC ENSBTAP00000025217/1-669 SPAGSPNLEP PLQCLVLICE AIPHPGSLEP PLGRGAFLSR HSLDMKFTYC bmy_06581T0/1-607 SPAGSPNLEP PLQCLVLICE AIPHPGSLEP PLGRGAFLSR HSLDMKFTYC ENSTTRP00000001516/1-667 SPAGSPHLEP PLQCLVLICE AIPHPGSLEP PLGRGAFLSR HSLDMKFTYC 301 350 ENSP00000366898/1-669 DDRIAEVAGY SPDDLIGCSA YEYIHALDSD AVSKSIHTLL SKGQAVTGQY BACU002132/1-647 DERIAEVAGY SPDDLIGCSA YEYIHALDSD AVGQSIHTLL SKGQAVTGQY ENSBTAP00000025217/1-669 DERIAEVAGY SPDDLIGCSA YEYIHALDSD AVGQSIHTLL SKGQAVTGQY bmy_06581T0/1-607 DERIAEVAGY SPDDLIGCSA YEYIHALDSD AVGQSIHTLL SKGQAVTGQY ENSTTRP00000001516/1-667 DERIAEVAGY SPDDLIGCSA YEYIHALDSD AVGQSIHTLL SKGQAVTGQY 351 400 ENSP00000366898/1-669 RFLARSGGYL WTQTQATVVS GGRGPQSESI VCVHFLISQV EETGVVLSLE BACU002132/1-647 RFLARSGGYL WTQTQATVVS GGRGPQSESI VCVHFLISRV EETEVVLSLE ENSBTAP00000025217/1-669 RFLARSGGYL WTQTQATVVS GGRGPQSESI VCVHFLISRV EETEVVLSLE bmy_06581T0/1-607 RFLARSGGYL WTQTQATVVS GGRGPQSESI VCVHFLISRV EETEVVLSLE ENSTTRP00000001516/1-667 RFLARSGGYL WTQTQATVVS GGRGPQSESI VCVHFLISRV EETEVVLSLE 401 450 ENSP00000366898/1-669 QTEQHSRRPI QRGAPSQKDT PNPGDSLDTP GPRILAFLHP PSLSEAALAA BACU002132/1-647 QTERHSRRHV QRGTPSQKDA PNPGDSLDTS GPRILAFLHP PALSEAALAA ENSBTAP00000025217/1-669 QTERHSRRHV QRGSPSQKDA PNPGDRLDTS GPRILAFLHP PALSEAALAA bmy_06581T0/1-607 QTERHSRRHV QRGTPSQKDA PNPGDSLDTS GPRILAFLHP PALSEAALAA ENSTTRP00000001516/1-667 QTERHSRRHV QRGTPSQKDA PNPGDSLDTS GPRILAFLHP PALSEAALAA 451 500 ENSP00000366898/1-669 DPRRFCSPDL RRLLGPILDG ASVAATPSTP LATRHPQSPL SADLPDELPV BACU002132/1-647 DPRRFCSPDL RRLLAPILDG TSVAATPSAP PAPRRPRSPL PADLPDELLV ENSBTAP00000025217/1-669 DPRRFCSPDL RRLLAPILDG TSVAATPSAP PATRRPQSPL PADLPDDLLV bmy_06581T0/1-607 DPRRFCSPDL RRLLAPILDG TSVAATPSAP PAPRRPRSPL PADLPDELLV ENSTTRP00000001516/1-667 DPRRFCSPDL RRLLAPILDG TSVAATPSAP PAPRRPRSPL PADLPDELLV 501 550 ENSP00000366898/1-669 GTENVHRLFT SGKDTEAVET DLDIAQDADA LDLEMLAPYI SMDDDFQLNA BACU002132/1-647 DVENAHKLFA SGKDLEAVET DLDIAQDVDA LDLEMLAPYI SMDDDFQLNS ENSBTAP00000025217/1-669 DVENAHKVLA SGKDLQTVET DLDIAQDVDA LDLEMLAPYI SMDDDFQLNS bmy_06581T0/1-607 DVENAHKLFA SGKDLEAVET DLDIA----- ---------- ------QLNS ENSTTRP00000001516/1-667 DVENAHKLFA SGKDLEAVET DLDIAQDVDA LDLEMLAPYI SMDDDFQLNS 551 600 ENSP00000366898/1-669 SEQLPRAYHR PLGAVPRPRA RSFHGLSPPA LEPSLLPRWG SDPRLSCSSP BACU002132/1-647 SEQLPRAYHR PPGAVPRPRA RSFHGMSPPT PEPSLLPRWG SDPRLSCSSP ENSBTAP00000025217/1-669 SEQLPRAYHR PPGAVPRPRA RSFHGMSPPT PETSLLPRWG SDPRLSCSSP bmy_06581T0/1-607 SEQLPRAYHR PPGAVPRPRA RSFHGM---- ---------- ---------- ENSTTRP00000001516/1-667 SEQLPRAYHR PPGAVPRPRA RSFHGMSPPT PEPSLLPRWG SDPRLSCSSP 601 650 ENSP00000366898/1-669 SRGDPSASSP MAGARKRTLA QSSEDEDEGV ELLGVRPPKR SPSPEHENFL BACU002132/1-647 SRGDPSASSP MAGARKRALA QSSEDEAEGV ELLGVRPPKR SPSPEPGNFL ENSBTAP00000025217/1-669 SRGDPSASSP MVGARKRALI PSSEDEAEKV ELLGIRPPKR SPSLEPENFL bmy_06581T0/1-607 ---------- -------ALA QSSEDEAEGV ELLG------ ---------- ENSTTRP00000001516/1-667 SRGDPSASSP MAGARKRALA QSAEDEAEGV ELLGVRPPKR SPSPEPENFL 651 700 ENSP00000366898/1-669 LFPLSLSFLL TGG-PAPGSL QDPSTPLLNL NEPLGLGPSL LSPYSDEDTT BACU002132/1-647 LPPLSLVMLV PEHRPLPRNP AEYETSCF-- -----VCAAV ITF--QHNYE ENSBTAP00000025217/1-669 LPPLSLSFLL TGG-PAPGSR QDPSTHLVEL NEPLGPGPSL LSLYPDEDTA bmy_06581T0/1-607 ------SFLL TGG-PAPGSQ QDPSTHLLEL NEPLGLGPSL LSLYPDEDTT ENSTTRP00000001516/1-667 LPPLSLSFLL TGG-PAPGSQ QDPSTHLLEL NEH--LGPSL LSLYPDEDTA 701 750 ENSP00000366898/1-669 QPGGPFQPRA GSAQAD BACU002132/1-647 QP-------- ------ ENSBTAP00000025217/1-669 QPRSHFQLAA GLAQAN bmy_06581T0/1-607 QPRSHFQPAA GLAQAN ENSTTRP00000001516/1-667 QPRSHFQPAA GLAQAN