KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:26 2014 Check: 00 .. Name: bmy_11344T0/1-638 Len: 893 Check: 6165 Weight: 1.00 Name: ENSP00000414851/1-891 Len: 893 Check: 5893 Weight: 1.00 Name: ENSBTAP00000025227/1-827 Len: 893 Check: 3334 Weight: 1.00 Name: BACU001598/1-730 Len: 893 Check: 4650 Weight: 1.00 Name: ENSTTRP00000006742/1-826 Len: 893 Check: 7351 Weight: 1.00 // 1 50 bmy_11344T0/1-638 MVAPVLETSH VFCCPNRVRG ALSWSSGPGG LLAFGTSCSV VLYDPQKSVI ENSP00000414851/1-891 MVAPVLETSH VFCCPNRVRG VLNWSSGPRG LLAFGTSCSV VLYDPLKRVV ENSBTAP00000025227/1-827 MVAPMLETSH VFCCPNRVRG ALSWSPGPGG LLAFGTSCSV VLYDPQKRVV BACU001598/1-730 MVAPVLETSH VFCCPNRVRG ALSWSSGPGG LLVFGTSCSV VLYDPQKSVV ENSTTRP00000006742/1-826 MVAPVLETSH VFCCPNRVRG ALSWTSGPGG LLAFGTSCSV VLYDPQKSVV 51 100 bmy_11344T0/1-638 ITNLNGHTAR VNCIQWICKQ DGSPSTELVS GGSDNQVIHW EIENNQLLKA ENSP00000414851/1-891 VTNLNGHTAR VNCIQWICKQ DGSPSTELVS GGSDNQVIHW EIEDNQLLKA ENSBTAP00000025227/1-827 ITNLNGHTAR VNCLQWICKQ DGSPSTELVS GGSDNQVIHW EIENNQLLQA BACU001598/1-730 ITNLNGHTAR VNCIQWICKQ DGSPSTELVS GGSDNQVIHW EIENNQLLKA ENSTTRP00000006742/1-826 ITNLNGHTAR VNCIQWICKQ DGSPSTELVS GGSDNQVIHW ETENNQLLKA 101 150 bmy_11344T0/1-638 VHLHGHEGPV YXVHAVYQRR ASDVALHTLI VSAASDSTVR VWSKQGSEVT ENSP00000414851/1-891 VHLQGHEGPV YAVHAVYQRR TSDPALCTLI VSAAADSAVR LWSKKGPEVM ENSBTAP00000025227/1-827 VHVSGHEGPV YAVHAVYQRM APGIALHTLI VSAASDSTVR VWSKQGSEVT BACU001598/1-730 VHLHGHEGPV YAVHAVYQRR ASDVALHALI VSAASDSTVR VWSKQGSEVT ENSTTRP00000006742/1-826 VHLHGHEGPV YAVHAVYQRR ALDVALHTLI VSAASDSTIR VWSKQGSEVT 151 200 bmy_11344T0/1-638 CLQTLDFGNG FTLALCLSFL PNTDV----- ---------- ---------- ENSP00000414851/1-891 CLQTLNFGNG FALALCLSFL PNTDVTWKTG QVERGRAWKP PASLALCSRS ENSBTAP00000025227/1-827 CLQTLNFGNG FALALCLSFL PNIDV----- ---------- ---------- BACU001598/1-730 CLQTLDFGNG FTLALCLSFL PNTDV----- ---------- ---------- ENSTTRP00000006742/1-826 CLQTLDFGNG FTLALCLSFL PNTDV----- ---------- ---------- 201 250 bmy_11344T0/1-638 ---------- ---------- ---------- ---------- PILACGDDDC ENSP00000414851/1-891 CDSMVSCYAS ILCKALWKEK LHTFWHHNRI SFLPSAFRPI PILACGNDDC ENSBTAP00000025227/1-827 ---------- ---------- ---------- ---------- PVLACGDDDC BACU001598/1-730 ---------- ---------- ---------- ---------- PVLACGDDDC ENSTTRP00000006742/1-826 ---------- ---------- ---------- ---------- PILACGDDDC 251 300 bmy_11344T0/1-638 KIHLFVQQND QFQKVLFLSG HEDWIRGVEW AAFGRDLFLA SCSQDCLIRI ENSP00000414851/1-891 RIHIFAQQND QFQKVLSLCG HEDWIRGVEW AAFGRDLFLA SCSQDCLIRI ENSBTAP00000025227/1-827 KIHLFVQQNN QFQKMLFLSG HEDWIRGVEW AAFGRDLFLA SCSQDCLIRI BACU001598/1-730 KIHLFVQQND QFQKVLFLSG HEDWIRGVEW AAFGRDLFLA SCSQDCLIRI ENSTTRP00000006742/1-826 KIHLFVQQND QFQKVLFLSG HEDWIRGVEW AAFGRDLFLA SCSQDCLIRI 301 350 bmy_11344T0/1-638 WRLYIKSTFL EAQE-DDNIR LKENTFTIES ESIKIAFAVT LETVLAGHEN ENSP00000414851/1-891 WKLYIKSTSL ETQD-DDNIR LKENTFTIEN ESVKIAFAVT LETVLAGHEN ENSBTAP00000025227/1-827 WRLYVKSTSL ETQEDDDNIK LKENTFNVEN ESIKITFAVT LETVLAGHEN BACU001598/1-730 WRLYIKSTFL EAQE-DDNIR LKENTFNIES E--------- ---------- ENSTTRP00000006742/1-826 WRLYIKSTFL ETQE-DDNIR LKENTFTIES ESIKIAFAVT LETVLAGHEN 351 400 bmy_11344T0/1-638 WVNAVHWQPS FYKDGVLQQP MRLLSASMDK TMILWAPDEE SGVWLEQVRV ENSP00000414851/1-891 WVNAVHWQPV FYKDGVLQQP VRLLSASMDK TMILWAPDEE SGVWLEQVRV ENSBTAP00000025227/1-827 WVNAVHWQPS FYKDGILQQP MRLLSASMDK TMILWAPDEE SGVWLEQVRV BACU001598/1-730 ---------- ---NGVLQQP MRLLSASMDK TMILWAPDEE SGVWLEQVRV ENSTTRP00000006742/1-826 WVNAVHWQPS FYKDGVLQQP VRLLSASMDK TMILWAPDEE SGVWLEQVRV 401 450 bmy_11344T0/1-638 GEVGGNTLGF YDCQFSEDGS MIIAHAFHGA LHLWKQNATN LREWTPEIVI ENSP00000414851/1-891 GEVGGNTLGF YDCQFNEDGS MIIAHAFHGA LHLWKQNTVN PREWTPEIVI ENSBTAP00000025227/1-827 GEVGGNTLGF YDCQFNEDGS MIIAHAFHGA LHLWKQNATN PKEWTPEIVI BACU001598/1-730 GEVGGSTLGF YDCQFSEDGS MIIAHAFHGA LHLWKQNATN PREWTPEIVI ENSTTRP00000006742/1-826 GEVGGNTLGF YDCQFSEDGS MIIAHAFHGA LHLWKQNATN PREWTPEIVI 451 500 bmy_11344T0/1-638 SGHFDGVQDL TWDPEGEFII T--------- ---------- -VTWHEIARP ENSP00000414851/1-891 SGHFDGVQDL VWDPEGEFII TVGTDQTTRL FAPWKRKDQS QVTWHEIARP ENSBTAP00000025227/1-827 SGHFDGVQDL TWDPEGEFII TVGTDQTTRL FAPWKRKDQS QVTWHEIARP BACU001598/1-730 SGHFDGVQDL TWDPEGEFIV TVGTDQTTRL FAPWKRKDQS QVTWHEIARP ENSTTRP00000006742/1-826 SGHFDGVQDL TWDPEGEFII TVGNDQTTRL FAPWKRKDQS QVTWHEIARP 501 550 bmy_11344T0/1-638 QIHGYDLKCL AMISRFQFVS GADEKVLRVF SAPRNFVENF CAITGQSLNH ENSP00000414851/1-891 QIHGYDLKCL AMINRFQFVS GADEKVLRVF SAPRNFVENF CAITGQSLNH ENSBTAP00000025227/1-827 QIHGYDLKCL AMISRFQFVS GADEKVLRVF SAPRNFVENF CAITGQSMNH BACU001598/1-730 QIHGYDLKCL AMISRFQFVS GADEKVLRVF SAPRNFVENF CAITGQSLNH ENSTTRP00000006742/1-826 QIHGYDLKCL AMISRFQFVS GADEKVLRVF SAPRIFVENF CAITGQSLNH 551 600 bmy_11344T0/1-638 VLCNQDGDLP EGATVPALGL SNKAVFQGDI ASQPSDEEEL LTSTGFEYHQ ENSP00000414851/1-891 VLCNQDSDLP EGATVPALGL SNKAVFQGDI ASQPSDEEEL LTSTGFEYQQ ENSBTAP00000025227/1-827 VLCDQDGDLP EGATVPALGL SNKAVFQGDM ASQHSDEEEL FSSAGFEYHQ BACU001598/1-730 VLCNQDSDLP EGATVPALGL SNKAVFQGDI ASQPSDEEEL LTSTGFEYHQ ENSTTRP00000006742/1-826 VLCNQDGDLP EGATVPALGL SNKAVFQGDI ASQPTDEEEL LTSTGFEYHQ 601 650 bmy_11344T0/1-638 VAFQPSILTE PPTEDHLLQN TLWPEVQKLY GHGYEIFCVA CSNSKTLLAS ENSP00000414851/1-891 VAFQPSILTE PPTEDHLLQN TLWPEVQKLY GHGYEIFCVT CNSSKTLLAS ENSBTAP00000025227/1-827 VAFQPSLLTE PPTEDHLLQN TLWPEVQKLY GHGYEIFCVA CSNSKTLLAS BACU001598/1-730 VAFQPSILTE PPTEDHLLQN TLWPEVQKLY GHGYEIFCVA CSNSKTLLAS ENSTTRP00000006742/1-826 VAFQPSILTE PPTEDHLLQN TLWPEVQKLY GHGYEIFCVA CSNSKTLLAS 651 700 bmy_11344T0/1-638 ACKVG---HF TFLFYLVTGY ------LSHQ APASLVAM-- ---------- ENSP00000414851/1-891 ACKAAKKEHA AIILWNTTSW KQVQNLVFHS LTVTQMAFSP NEKFLLAVSR ENSBTAP00000025227/1-827 ACKAAKKEHA AIILWNTASW KQVQNLIFHS LTVTQMAFSP DDKFLLAVSR BACU001598/1-730 ACKAAKKEHA AIILWNTASW KQVQNLIFHS LTVTQMAFSP DDKFLLAVSR ENSTTRP00000006742/1-826 ACKAAKKEHA AIILWNTASW KQVQNLIFHS LTVTQMAFSP DDKFLLAVSR 701 750 bmy_11344T0/1-638 ---------- ---------- ---------- ---------- -----EAEFD ENSP00000414851/1-891 DRTWSLWKKQ DTISPEFEPV FSLFAFTNKI TSVHSRIIWS CDWSPDSKYF ENSBTAP00000025227/1-827 DRTWSLWKRQ DTIPPELDPV FSLFAFTNKV TAVHSRIIWS CDWSPDGKYF BACU001598/1-730 DRTWSLWKRQ DTISPELDPV FSLFAFTNKI TAVHSRIIWS CDWSPDGKYF ENSTTRP00000006742/1-826 DRTWSLWKRQ DTISPELDPV FSLFAFTNKI TAVHSRIIWS CDWSPDGKYF 751 800 bmy_11344T0/1-638 MKGHR----- ---------- --------CL IFLNLAFSVS -FPFCPIRSL ENSP00000414851/1-891 FTGSRDKKVV VWGECDSTDD CIEHNIGPCS SVLDVGGAVT AVSVCPVLHP ENSBTAP00000025227/1-827 FTGSRDRKVV VWGECDSSDD AVEHSIGPCS SVLDVGGAVT AVSVCPVLNL BACU001598/1-730 FTGSRDKKVV VWGECDSSED STEHSIGPCS SVLDVGGAVT AVSVCPVLNL ENSTTRP00000006742/1-826 FTGSRDKKVV VWGECDSSDD STEHSIGPCS SVLDVGGAVT AVSVCPVLNL 801 850 bmy_11344T0/1-638 QLPFK---SV SAAHFCS--- ---------- ---------- ---------- ENSP00000414851/1-891 SQRYVVAVGL ECGKICL-YT WKKTDQVPEI NDWTHCVETS QSQSHTLAIR ENSBTAP00000025227/1-827 SQRYVVAVGL ECGKICL-YS WEKTDQVPEI NDWIRCVETS QSQSHTLAIK BACU001598/1-730 SQRSALSMCQ SSSKAVLPHG YEMDESSP-- ---------- ---------- ENSTTRP00000006742/1-826 SQRYVVAVGL ECGKICL-YS WKKTDQVPEI NDWRHCVETS QSQSHTLAIK 851 900 bmy_11344T0/1-638 ---------- ---------- ---------- ---------- --- ENSP00000414851/1-891 KLCWKNCSGK TEQKEAEGAE WLHFASCGED HTVKIHRVNK CAL ENSBTAP00000025227/1-827 KLCWKNCNGK TEQNEGEGAE WLQFASCGED HTVKIHRVNR CAL BACU001598/1-730 ---------- ---------- ---------- ---------- --- ENSTTRP00000006742/1-826 KLCWKNCNGK AEQNEAEGTE WLHFASCGED HTVKIHRVNR CAL