KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:38 2014 Check: 00 .. Name: ENSTTRP00000002368/1-1311 Len: 1468 Check: 1271 Weight: 1.00 Name: bmy_19215T0/1-746 Len: 1468 Check: 1573 Weight: 1.00 Name: BACU016145/1-1268 Len: 1468 Check: 2808 Weight: 1.00 Name: ENSP00000360822/1-1235 Len: 1468 Check: 9568 Weight: 1.00 Name: ENSBTAP00000025261/1-1185 Len: 1468 Check: 295 Weight: 1.00 // 1 50 ENSTTRP00000002368/1-1311 MPLPDGAHSP GGVYRGARGG GHTNRTFVFD DGRCAARQPG AGDGGRGDGA bmy_19215T0/1-746 ---------- ---------- ---------- ---------- ---------- BACU016145/1-1268 ---------- ---------- ---------- ---------- ---------- ENSP00000360822/1-1235 MPLPDGARTP GGVCREARGG GYTNRTFEFD DGQCAPRRPC A-----GDGA ENSBTAP00000025261/1-1185 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000002368/1-1311 LLDTASLKMS DLDSELVPLP PRYRFRDLLL GDQSFQNDDR MARTKLPRSP bmy_19215T0/1-746 ---------- ---------- ---------- ---------- ---------- BACU016145/1-1268 --------MS DLDAELVPLP PRYRFRDLLL GDQSFQNDDR DGLCVCVCPP ENSP00000360822/1-1235 LLDTAGFKMS DLDSEVLPLP PRYRFRDLLL GDPSFQNDDR ---------- ENSBTAP00000025261/1-1185 ---------- ---------- -RLHVEEFSL DSSVSQ---- ---------- 101 150 ENSTTRP00000002368/1-1311 SEGKAGP--- ---------- ---------- ---------- ---------G bmy_19215T0/1-746 ---------- ---------- ---------- ---------- ---------- BACU016145/1-1268 EDMPPGPRAG MENPALHVRR GVSDFKPSTE QWRVRWVHGQ RELARTPPGG ENSP00000360822/1-1235 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025261/1-1185 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000002368/1-1311 GAPAGASAPE EPHGLSPLLP ARGGGSVGSD VGQXXXXXXX XXXXXXXXVQ bmy_19215T0/1-746 ---------- ---------- ---------- ---------- ---------- BACU016145/1-1268 SLSVPVSLGD SLSSVCMIGP RKGSGPGRFC VLCPKG---- --------VQ ENSP00000360822/1-1235 ---------- ---------- ---------- ---------- --------VQ ENSBTAP00000025261/1-1185 ---------- ---------- ---------- ---------- --------VQ 201 250 ENSTTRP00000002368/1-1311 VEFYVNENTF KERLKLFFIK NQRSS-RIRL LNFSLKLLT- LLYIVR-LLD bmy_19215T0/1-746 ---------- ---------- -----LRIRL FNFSLKLLTC LLYIVRVLLD BACU016145/1-1268 VEFYVNENTF KERLKLFFIK NQRSSLRIRL FNFSLKLLTC LLYIVRVLLD ENSP00000360822/1-1235 VEFYVNENTF KERLKLFFIK NQRSSLRIRL FNFSLKLLTC LLYIVRVLLD ENSBTAP00000025261/1-1185 VEFYVNENTF KERLKLFFIK NQRSSLRIRL FNFSLKLLTC LLYIVRVLLD 251 300 ENSTTRP00000002368/1-1311 DPALGIGCWG CPKQNYTFNE SSSEINX--- ---------- ---------- bmy_19215T0/1-746 DPALGIG--- ---------- ---------- ---------- ---------- BACU016145/1-1268 DPALGIGCWG CPKQNYTFNE SSSEINWAPI LWVERKMALW AIQVIVAIIS ENSP00000360822/1-1235 DPALGIGCWG CPKQNYSFND SSSEINW--- ---------- ---------- ENSBTAP00000025261/1-1185 DPALGIGCWG CPKQNYTFNE SSSEINW--- ---------- ---------- 301 350 ENSTTRP00000002368/1-1311 ---------- ---------- ---------- ---------- -----XXXXX bmy_19215T0/1-746 ---------- ---------- ---------- ---------- ---------- BACU016145/1-1268 FLETMLLIYL SYKNDFHRAI LRTQSAMFNQ VLILFCTLLC LVFTGAPILW ENSP00000360822/1-1235 ---------- ---------- ---------- ---------- -----APILW ENSBTAP00000025261/1-1185 ---------- ---------- ---------- ---------- -----APILW 351 400 ENSTTRP00000002368/1-1311 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XGNIWEQIFR VAFILEMINT bmy_19215T0/1-746 ---------- ---------- ---------- ---------- ---------- BACU016145/1-1268 VERKMALWAI QVIVAIISFL ETMLLIYLSY KGNIWEQIFR VAFILEMINT ENSP00000360822/1-1235 VERKMTLWAI QVIVAIISFL ETMLLIYLSY KGNIWEQIFR VSFVLEMINT ENSBTAP00000025261/1-1185 VERKVALWAI QVIVAIISFL ETMLLIYLSY KGNIWEQIFR VSFILEMINT 401 450 ENSTTRP00000002368/1-1311 LPFIITIFWP PLRNLFIPVF LNCWLAKHAL ENMINDFHRA ILRTQSAMFN bmy_19215T0/1-746 ---------- ---------- ---W------ ---------- ---------- BACU016145/1-1268 LPFIITIFWP PLRNLFIPVF LNCWLAKHAL ENMINDFHRA ILRTQSAMFN ENSP00000360822/1-1235 LPFIITIFWP PLRNLFIPVF LNCWLAKHAL ENMINDFHRA ILRTQSAMFN ENSBTAP00000025261/1-1185 LPFIITIFWP PLRNLFIPVF LNCWLAKHAL ENMINDFHRA ILRSQSAMFN 451 500 ENSTTRP00000002368/1-1311 QVLILFCTLL CLVFTGTCGI QHLERAGGNL SLLTSFYFCI VTFSTVGYGD bmy_19215T0/1-746 ---------- ------TCGI QHLERAGDNL SLLTSFYFCI VTFSTVGYGD BACU016145/1-1268 QVLILFCTLL CLVFTGTCGI QHLERAGDNL SLLTSFYFCI VTFSTVGYGD ENSP00000360822/1-1235 QVLILFCTLL CLVFTGTCGI QHLERAGENL SLLTSFYFCI VTFSTVGYGD ENSBTAP00000025261/1-1185 QVLILFCTLL CLVFTGTCGI QHLERAGDNL SLLTSFYFCI VTFSTVGYGD 501 550 ENSTTRP00000002368/1-1311 VTPKIWPSQL LVAIMICVAL VVLP------ ---------- ---------- bmy_19215T0/1-746 VTPKIWPSQL LVVVMICVAL VVLPLQVVGL GAVTRVCAPP PGAPGHLELT BACU016145/1-1268 VTPKIWPSQL LVVIMICVAL VVLP------ ---------- ---------- ENSP00000360822/1-1235 VTPKIWPSQL LVVIMICVAL VVLP------ ---------- ---------- ENSBTAP00000025261/1-1185 VTPKIWPSQL LVVIMICVAL VVLP------ ---------- ---------- 551 600 ENSTTRP00000002368/1-1311 ---LQFEELV YLWMERQKSG GNYSRHRAQT EKHVILCVSS LKIDLLMDFL bmy_19215T0/1-746 CSSLQFEELV YLWMERQKSG GNYSRHRAQT EKHVILCVSS LKIDLLMDFL BACU016145/1-1268 ---LQFEELV YLWMERQKSG GNYSRHRAQT EKHVILCVSS LKIDLLMDFL ENSP00000360822/1-1235 ---LQFEELV YLWMERQKSG GNYSRHRAQT EKHVVLCVSS LKIDLLMDFL ENSBTAP00000025261/1-1185 ---LQFEELV YLWMERQKSG GNYSRHRAQT EKHVILCVSS LKIDLLMDFL 601 650 ENSTTRP00000002368/1-1311 NEFYAHPRLQ DYYVVILCPT EMDIQVRRVL QIPLWSQRVI YLQGSALKDQ bmy_19215T0/1-746 NEFYAHPRL- ---------- ---------- ---------- ---------- BACU016145/1-1268 NEFYAHPRLQ DYYVVILCPT EMDIQVRRVL QIPLWSQRVI YLQGSALKDQ ENSP00000360822/1-1235 NEFYAHPRLQ DYYVVILCPT EMDVQVRRVL QIPLWSQRVI YLQGSALKDQ ENSBTAP00000025261/1-1185 NEFYAHPRLQ DYYVVILCPT EMDIQVRRVL QIPLWSQRVI YLQGSALKDQ 651 700 ENSTTRP00000002368/1-1311 DLMRAKMDNG EACFILSSRN EVDRTAADHQ TILRAWAVKD FAPNCPLYVQ bmy_19215T0/1-746 ---------- ---------- ---------- ---------- ---------Q BACU016145/1-1268 DLMRAKMDNG EACFILSSRN EVDRTAADHQ TILRAWAVKD FAPNCPLYVQ ENSP00000360822/1-1235 DLMRAKMDNG EACFILSSRN EVDRTAADHQ TILRAWAVKD FAPNCPLYVQ ENSBTAP00000025261/1-1185 DLMRAKMDNG EACFILSSRN EVDRTAADHQ TILRAWAVKD FAPNCPLYVQ 701 750 ENSTTRP00000002368/1-1311 ILKPENKFHV KFAEHVVCEE ECKYAMLVLS CICPTTP-LI TLLVHTSRDQ bmy_19215T0/1-746 ILKPENKFHV KFAEATLGGH HS-------- ---PAGRAHR G-VTSSPRPR BACU016145/1-1268 ILKPENKFHV KFAEHVVCEE ECKYAMLALS CICPATPTLI TLLVHTSRGQ ENSP00000360822/1-1235 ILKPENKFHV KFADHVVCEE ECKYAMLALN CICPATSTLI TLLVHTSRGQ ENSBTAP00000025261/1-1185 ILKPENKFHV KFAEHVVCEE ECKYAMLALN CICPATSTLI TLLVHTSRGQ 751 800 ENSTTRP00000002368/1-1311 EGQDSPEQWQ RMYGRCSGNE VYHIRMGDSK FFREYEGKSF TYAAFHAHKK bmy_19215T0/1-746 EGQDSPEQWQ RMYGRCSGNE VYHVRMGDSK FFREYEGKSF TYAAFHAHKK BACU016145/1-1268 EGQDSPEQWQ RMYGRCSGNE VYHIRMGDSK FFREYEGKSF TYAAFHAHKK ENSP00000360822/1-1235 EGQESPEQWQ RMYGRCSGNE VYHIRMGDSK FFREYEGKSF TYAAFHAHKK ENSBTAP00000025261/1-1185 EGQDSPEQWQ RMYGRCSGNE VYHVRMGDSK FFREYEGKSF TYAAFHAHKK 801 850 ENSTTRP00000002368/1-1311 YGVCLIGLKR EESKSILLNP GPRHILAASD TCFYINITKE ENSAFIFKQE bmy_19215T0/1-746 YG-------- -------PRP APPR------ ---------- ---------- BACU016145/1-1268 YG-------- ---PPARSRP GL-HVCPVGA SCLPVGTFVG INVQVPARGR ENSP00000360822/1-1235 YGVCLIGLKR EDNKSILLNP GPRHILAASD TCFYINITKE ENSAFIFKQE ENSBTAP00000025261/1-1185 YGVCLIGLKR EDNKSILLNP GPRHILAASD TCFYINITKE ENSAFIFKQE 851 900 ENSTTRP00000002368/1-1311 EKQKKKGFVG QGLYEGSSRL PVHSIIASMG TVAMDLQNTE CQPAQSGGGS bmy_19215T0/1-746 ---------- ---------- ---------- ---------- --PVQA---- BACU016145/1-1268 PPCVKGHWEP LPPGQTGEGL PAKFSRSVPG TVAMDLQNTE CRPAQSG--- ENSP00000360822/1-1235 EKRKKRAFSG QGLHEGPARL PVHSIIASMG TVAMDLQGTE HRPTQSGGGG ENSBTAP00000025261/1-1185 EKQKRKGFAG QGLYEGSSRL PVHSIIASMG TVAMDLQNTE CRPTQSGGGS 901 950 ENSTTRP00000002368/1-1311 GGSKLALPTE NGSGSRRPSI APVLEVADSS TLLPCDLLSD QSEDETTPSD bmy_19215T0/1-746 ---------- ---------- ---------- ---------- ---------- BACU016145/1-1268 GGSKLALPTE NGSGSRRPSI APVLEVADSS TLLPCDLLSD QSEDEMTPSD ENSP00000360822/1-1235 GGSKLALPTE NGSGSRRPSI APVLELADSS ALLPCDLLSD QSEDEVTPSD ENSBTAP00000025261/1-1185 GGSKLALPTE NGSGSRRPSI APVLEVADSS ALLPCDLLSD QSEDEMTPSE 951 1000 ENSTTRP00000002368/1-1311 EEGLSVVXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXGCKHNSY bmy_19215T0/1-746 ---------- ---------- ---------- ---------- --RGCKHNSY BACU016145/1-1268 EEGLSVAEYV KGYPPNSPYI GSSPTLCHLL PVKAPFCCLR LDKGCKHNSY ENSP00000360822/1-1235 DEGLSVVEYV KGYPPNSPYI GSSPTLCHLL PVKAPFCCLR LDKGCKHNSY ENSBTAP00000025261/1-1185 DEGLSVVEYV KGYPPNSPYI GSSPTLCHLL PVKAPFCCLR LDKGCKHNSY 1001 1050 ENSTTRP00000002368/1-1311 EDAKAYGFKN RLIIVSAETA GNGLYNFIVP LRAYYRPRRE LNPIVLLLDN bmy_19215T0/1-746 EDAKAYGFKN KLIIVSAETA GNGLYNFVVP LRAYYRPRRE LNPIVLLLDN BACU016145/1-1268 EDAKAYGFKN KLIIVSAETA GNGLYNFIVP LRAYYRPRRE LNPIVLLLDN ENSP00000360822/1-1235 EDAKAYGFKN KLIIVSAETA GNGLYNFIVP LRAYYRSRKE LNPIVLLLDN ENSBTAP00000025261/1-1185 EDAKAYGFKN KLIIVSAETA GNGLYNFIVP LRAYYRPRRE LNPIVLLLDN 1051 1100 ENSTTRP00000002368/1-1311 RPDHHFLEAI CCFPMVYYME GSVDNLDSLL QCGIIYADNL VVVDKESTMS bmy_19215T0/1-746 KPDHHFLEAI CCFPMVYYME GSVDNLDSLL QCGIIYADNL VVVDKESTMS BACU016145/1-1268 KPDHHFLEAI CCFPMVYYME GSVDNLDSLL QCGIIYADNL VVVDKESTMS ENSP00000360822/1-1235 KPDHHFLEAI CCFPMVYYME GSVDNLDSLL QCGIIYADNL VVVDKESTMS ENSBTAP00000025261/1-1185 KPDHHFLEAI CCFPMVYYME GSVDNLDSLL RCGVIYADNL VVADKESTMS 1101 1150 ENSTTRP00000002368/1-1311 AKEDYMADAK TIVNVQTMFR LFPSLSITTE LTHPSNMRFM QFRAEDSYSL bmy_19215T0/1-746 AEEDYMADAK TIVSVQTMFR LFPSLSITTE LTHPSNMRFM QFRAKDSYSL BACU016145/1-1268 AEEDYMADAK TIVSVQTMFR LFPSLSITTE LTHPSNMRFM QFRAKDSYSL ENSP00000360822/1-1235 AEEDYMADAK TIVNVQTMFR LFPSLSITTE LTHPSNMRFM QFRAKDSYSL ENSBTAP00000025261/1-1185 AEEDYMADAK TIVNVQTMFR LFPSLSITTE LTHPSNMRFM QFRAKDSYSL 1151 1200 ENSTTRP00000002368/1-1311 ALSRLEKRER ENGSNLAFMF RLPFAAGRVF SISMLDTLLY QSFVKDYMIP bmy_19215T0/1-746 ALSKLEKRER ENGSNLAFMF RLPFAAGRVF SISMLDTLLY QSFVKDYMIP BACU016145/1-1268 ALSRLEKRER ENGSNLAFMF RLPFAAGRVF SISMLDTLLY QSFVKDYMIP ENSP00000360822/1-1235 ALSKLEKRER ENGSNLAFMF RLPFAAGRVF SISMLDTLLY QSFVKDYMIT ENSBTAP00000025261/1-1185 ALSKLEKRER ENGSNLAFMF RLPFAAGRVF SISMLDTLLY QSFVKDYMIP 1201 1250 ENSTTRP00000002368/1-1311 ITRLLLGLDT TPGSGYLCAM KVTEDDLWIR TYGRLFQKLC SSSAEIPIGI bmy_19215T0/1-746 ITRLLLGLDT TPGSGYLCAM KVTEDDLWIR TYGRLFQKLC SSSAEIPIGI BACU016145/1-1268 ITRLLLGLDT TPGSGYLCAM KVTEDDLWIR TYGRLFQKLC SSSAEIPIGI ENSP00000360822/1-1235 ITRLLLGLDT TPGSGYLCAM KITEGDLWIR TYGRLFQKLC SSSAEIPIGI ENSBTAP00000025261/1-1185 ITRLLLGLDT TPGSGYLCAM KISEDDLWIR TYGRLFQKLC SSSAEIPIGI 1251 1300 ENSTTRP00000002368/1-1311 YRTESHVFSS -------SES QVSVSVEHHE ETREAQGPWG SRAGTGGGG- bmy_19215T0/1-746 YRTECHVFSS -------SES QVSVSMGDRE DAREAKGPWG SRAGTGGGGG BACU016145/1-1268 YRTECHVFSS ---------- ---------- ------EPHN LRA------- ENSP00000360822/1-1235 YRTESHVFST SEPHDLRAQS QISVNVEDCE DTREVKGPWG SRAGTGGSS- ENSBTAP00000025261/1-1185 YRTQCHVFST -EPPDLRAQS QVSVSVEDCE DTREAKGPWG ARVGTSGGS- 1301 1350 ENSTTRP00000002368/1-1311 ----HTVGGG SAERPLLRRK SLPWARRLSR KGARHTGK-A AAEEISQQRL bmy_19215T0/1-746 AHGRHAVGGD SADHPLLRRT SLPWARRLSR KGAGHTGK-A AAEWISQQRL BACU016145/1-1268 ---------- ---------- ---------- ---------- ---------- ENSP00000360822/1-1235 -QGRHTGGGD PAEHPLLRRK SLQWARRLSR KAPKQAGRAA AAEWISQQRL ENSBTAP00000025261/1-1185 THGRHTVGSD PAEHPLLRRK SLPWARRLSR KGSRHTGN-A AAEWISQQRL 1351 1400 ENSTTRP00000002368/1-1311 RLHQRSERQE LSELVKNRMK HLGLPTTGYE DVANLTASDV MNRVNLGYLQ bmy_19215T0/1-746 SLYQRSERQE LSELVKNRMK HLGLPTTGYE DVANLTASDV MNRVNLGYLQ BACU016145/1-1268 ---QRSERQE LSELVKNRMK HLGLPTTGYE DVANLTASDV MNRVNLGYLQ ENSP00000360822/1-1235 SLYRRSERQE LSELVKNRMK HLGLPTTGY- ---------- ---------- ENSBTAP00000025261/1-1185 SLYRRSERQE LSELVKNRMK HLGLPTSGYE DVANLTASDV MNRVNLGYLQ 1401 1450 ENSTTRP00000002368/1-1311 DEMNDQQNTL SYVLINPPPD TRLEPNDIVY LIRSDPLAHV ASSSRSRKSS bmy_19215T0/1-746 DEMNDHQNTL SYVLINPPPD TRLEPNDIVY LIRSDPLAHV ASSSRSRKSS BACU016145/1-1268 DEMNDHQNTL SYVLINPPPD TRLEPNDIVY LIRSDPLAHV ASSSRSRKSS ENSP00000360822/1-1235 DEMNDHQNTL SYVLINPPPD TRLEPSDIVY LIRSDPLAHV ASSSQSRKSS ENSBTAP00000025261/1-1185 DEMNDHQNTL SYVLINPPPD TRLEPNDIVY LIRSDPLAHV ASSSQSRKSS 1451 1500 ENSTTRP00000002368/1-1311 CS-KLASCNP ETRDETQF bmy_19215T0/1-746 CGNKLASCSP ETRDETQF BACU016145/1-1268 CGNKLASCSP ETRDETQF ENSP00000360822/1-1235 CSHKLSSCNP ETRDETQL ENSBTAP00000025261/1-1185 CSNKLASCNP ETRDETQL