KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:40 2014 Check: 00 .. Name: ENSP00000366563/1-1044 Len: 1102 Check: 8584 Weight: 1.00 Name: ENSTTRP00000002855/1-1049 Len: 1102 Check: 4900 Weight: 1.00 Name: ENSBTAP00000025274/1-1026 Len: 1102 Check: 7114 Weight: 1.00 Name: BACU002999/1-1010 Len: 1102 Check: 860 Weight: 1.00 Name: bmy_06054T0/1-987 Len: 1102 Check: 8772 Weight: 1.00 // 1 50 ENSP00000366563/1-1044 MPPGVDCPME FWTKEENQSV VVDFLLPTGV YLNFPVSRNA NLSTIKQLLW ENSTTRP00000002855/1-1049 MPPGVDCPME FWTKEENQSV AVDFLLPTGV YLNFSVSRNA NLSTIKKVLW ENSBTAP00000025274/1-1026 MPPGVDCPME FWTKEENQNV AVDFLLPTGV YLNFPVSRNA NLSTIKKVLW BACU002999/1-1010 MPPGVDCPME FWTKEENQSV AVDFLLPTGV YLNFPVSRNA NLSTIKKVLW bmy_06054T0/1-987 MPPGVDCPME FWTKEENQSV TVDFLLPTGV YLNFPVSRNA NLSTIKKVLW 51 100 ENSP00000366563/1-1044 HRAQYEPLFH MLSGPEAYVF TCINQTAEQQ ELEDEQRRLC DVQPFLPVLR ENSTTRP00000002855/1-1049 HRAQYEPLFH MLSDPEAYVF TCVNQTAEQQ ELEDEQRRLC DIQPFLPVLR ENSBTAP00000025274/1-1026 HRAQYEPLFH MLSDPEAYVF TCVNQTAEQQ ELEDEQRRLC DIQPFLPVLR BACU002999/1-1010 --PQYEPLLP MLSDPEAYVF TCVNQTAEQQ ELEDEQRRLC DIQPFLPVLR bmy_06054T0/1-987 HRAQYEPLFH MLSDPEAYVF TCVNQTAEQQ ELEDEQRRLC DIQPFLPVLR 101 150 ENSP00000366563/1-1044 LVAREGDRVK KLINSQISLL IGKGLHEFDS LCDPEVNDFR AKMCQFCEEA ENSTTRP00000002855/1-1049 LVAREGDRVK KLINSQISLL IGKGLHEFDS LQDPEVNDFR AKMRQFCEEV ENSBTAP00000025274/1-1026 LVAREGDRVK KLINSQISLL IGKGLHEFDS LQDPEVNDFR GKMRQFCEEA BACU002999/1-1010 LVAREGDRVK KLINSQISLL IGKGLHEFDS LQDPEVNDFR AKMRQFCEEV bmy_06054T0/1-987 LVAREGDRVK KLINSQISLL IGK------- --DPEVNDFR AKMRQFCEEV 151 200 ENSP00000366563/1-1044 AARRQQLGWE AWLQYSFPLQ LEPSAQTWGP GTLRLPNRAL LVNVKFEGSE ENSTTRP00000002855/1-1049 AAHRQQLGWE AWLQYSFPLQ LEPSARSWGP GTLRVPNRAL LVNVKFEGSE ENSBTAP00000025274/1-1026 AARRQQLGWE AWLQYSFPLQ LEPSARSWGP GTLRVPNRVL LVNVKFEGSE BACU002999/1-1010 AAHRQQLGWE AWLQYSFPLQ LEPSARSWGP GTLRVPNRAL LVNVKFEGSE bmy_06054T0/1-987 AAHRQQLGWE AWLQYSFPLQ LEPSARSWGP GTLRVPNRAL LVNVKFEGSE 201 250 ENSP00000366563/1-1044 ESFTFQVSTK DVPLALMACA LRKKATVFRQ PLVEQPEDYT LQVNGRHEYL ENSTTRP00000002855/1-1049 ESFTFQVSTK DVPLALMACA LRKKATVFRQ PLVEQPEDYT LQVNGKHEYL ENSBTAP00000025274/1-1026 ESFTFQVSTK DVPLALMACA LRKKATVFRQ PLVEQPEDYT LQVNGKHEYL BACU002999/1-1010 ESFTFQVSTK DVPLALMACA LRKKATVFRQ PLVEQPEDYA LQVNGKHEYL bmy_06054T0/1-987 ESFTFQVSTK DVPLALMACA LRKKATVFRQ PLVEQPEDYA LQVNGKHEYL 251 300 ENSP00000366563/1-1044 YGSYPLCQFQ YICSCLHSGL TPHLTMVHSS SILAMRDEQS NPAPQVQKPR ENSTTRP00000002855/1-1049 YGSHPLCQF- ---------- ---------- ---------- ----QVQKPR ENSBTAP00000025274/1-1026 YGSYPLCQFQ YICSCLHSGL TPHLTMVHSS SILAMRDEQS NPAPQVQKPR BACU002999/1-1010 YGSYPLCQFQ YICSCLHSGL TPHLTMVHSS SILAMRDEQS NPAPQVQKPR bmy_06054T0/1-987 YGSYPLCQFQ YICSCLHSGL TPHLTMVHSS SILAMRDEQS NPAPQVQKPR 301 350 ENSP00000366563/1-1044 AKPPPIPAKK PSSVSLWSLE QPFRIELIQG SKVNADERMK LVVQAGLFHG ENSTTRP00000002855/1-1049 AKPPPIPLKK PASVSLWSLE QPFCIELIQG SKVNADERMK LVVQAGLFHG ENSBTAP00000025274/1-1026 TKPPPIPMKK PSSVSLWSLE QPFYIELIQG SKVNADERMK LVVQAGLFHG BACU002999/1-1010 AKPPPIPLKK PASVSLWSLE QPFCIELIQG SKVNADERMK LVVQAGLFHG bmy_06054T0/1-987 AKPPPIPLKK PASVSLWSLE QPFCIELIQG SKVNADERMK LVVQAGLFHG 351 400 ENSP00000366563/1-1044 NEMLCKTVSS SEVSVCSEPV WKQRLEFDIN ICDLPRMARL CFALYAVIEK ENSTTRP00000002855/1-1049 NETLCKTVSS SEVSVCSEPV WKQRLEFDIN ICDLPRMARL CFALYAVIEK ENSBTAP00000025274/1-1026 NETLCKTVSS SEVSVCSEPV WKQRLEFDIN ICDLPRMARL CFALYAVIEK BACU002999/1-1010 NETLCKTVSS SEVSVCSEPV WKQRLEFDIN VCDLPRMARL CFALYAVIEK bmy_06054T0/1-987 NETLCKTVSS SEVSVCSEPV WKQRLEFDIN VCDLPRMARL CFALYAVIEK 401 450 ENSP00000366563/1-1044 AKKARSTKKK SKKADCPIAW ANLMLFDYKD QLKTGERCLY MWPSVPDEKG ENSTTRP00000002855/1-1049 AKKARSTKKK SKKADCPIAW ANLMLFDYKN QLKTGERCLY MWPSVPDEKG ENSBTAP00000025274/1-1026 AKKARSTKKK SKKADCPIAW ANLMLFDYKD QLKTGEHCLY MWPSVPDEKG BACU002999/1-1010 AKKARSTKKK SKKADCPIAW ANLMLFDYKD QLKTGERCLY MWPSVPDEKG bmy_06054T0/1-987 AKKARSTKKK SKKADCPIAW ANLMLFDYKD QLKTGERCLY MWPSVPDEKG 451 500 ENSP00000366563/1-1044 ELLNPTGTVR SNPNTDSAAA LLICLPEVAP HPVYYPALEK ---------- ENSTTRP00000002855/1-1049 ELLNPCGTVR SNPNTESAAA LVIFLPEVAP HPVYYPALDK LVGEMRLASH ENSBTAP00000025274/1-1026 ELLNPCGTVR SNPNTESAAA LVIFLPEVAP HPVYYPFLDK ---------- BACU002999/1-1010 ELLNPCGTVR SNPNTESAAA LVIFLPEVAP HPVYYPALDK ---------- bmy_06054T0/1-987 ELLNPCGTVR SNPNTESAAA LVILLPEVAP HPVYYPALDK ---------- 501 550 ENSP00000366563/1-1044 ---------- ---------- ---------- ---------- --------IL ENSTTRP00000002855/1-1049 GRRSGMLTPC HAGESPPLRV TGVLTPAPGA PQARLAQAPG AADSSRLQIL ENSBTAP00000025274/1-1026 ---------- ---------- ---------- ---------- --------IL BACU002999/1-1010 ---------- ---------- ---------- ---------- --------IL bmy_06054T0/1-987 ---------- ---------- ---------- ---------- ---------- 551 600 ENSP00000366563/1-1044 ELGRHSECVH VTEEEQLQLR EILERRGSGE LYEHEKDLVW KLRHEVQEHF ENSTTRP00000002855/1-1049 ELGRHGEHGR FTEEEQLQLR EILERRGSGE LYEHEKDLVW KMRHEIQEHF ENSBTAP00000025274/1-1026 ELGRLGEHGR FTEEEQLQLR EILERRGSGE LYEHEKDLVW KMRHEIQEHF BACU002999/1-1010 ELGRHGEHGR FTEEEQLQLR EILERRGSGE LYEHEKDLVW KMRHEIQEHF bmy_06054T0/1-987 ---------- -----QLQLR EILERRGSGE LYEHEKDLVW KMRHEIQEHF 601 650 ENSP00000366563/1-1044 PEALARLLLV TKWNKHEDVA QMLYLLCSWP ELPVLSALEL LDFSFPDCHV ENSTTRP00000002855/1-1049 PEALARLLLV TKWNKHEDVA QMLYLLCSWP ELPVLSALEL LDFSFPDRHV ENSBTAP00000025274/1-1026 PEALARLLLV TKWNKHEDVA QMLYLLSSWP ELPVLSALEL LDFSFPDRHV BACU002999/1-1010 PEALARLLLV TKWNKHEDVA QMLHLLCSWP ELPVLSALEL LDFSFPDRHV bmy_06054T0/1-987 PEALARLLLV TKWNKHEDVA QMLYLLCSWP ELPVLSALEL LDFSFPDRHV 651 700 ENSP00000366563/1-1044 GSFAIKSLRK LTDDELFQYL LQLVQVLKYE SYLDCELTKF LLDRALANRK ENSTTRP00000002855/1-1049 GSFAIKSLRK LTDDELFQYL LQLVQVLKYE SYLDCELTKF LLDRALANRK ENSBTAP00000025274/1-1026 GSFAIKSLRK LTDDELFQYL LQLVQVLKYE SYLDCELTKF LLDRALANRR BACU002999/1-1010 GSFAIKSLRK LTDDELFQYL LQLVQVLN-- ---------- ---------- bmy_06054T0/1-987 GSFAIKSLRK LTDDELFQYL LQLVQVLKYE SYLDCELTKF LLDRALANRK 701 750 ENSP00000366563/1-1044 IGHFLFWHLR SEMHVPSVAL RFGLILEAYC RGSTHHMKVL MKQGEALSKL ENSTTRP00000002855/1-1049 IGHFLFWHL- ---------- -LGFF----- -RSRARLIIR VVQGEALSKL ENSBTAP00000025274/1-1026 IGHFLFWHLR SEMHVPSVAL RFGLIMEAYC RGSTHHMKVL MKQGEALSKL BACU002999/1-1010 ---------- SEMHVPSVAL RFGLIMEAYC RGSTHHMKVL MKQGEALSKL bmy_06054T0/1-987 IGHFLFWHLR SEMHVPSVAL RFGLIMEAYC RGSTHHMKVL MKQGEALSKL 751 800 ENSP00000366563/1-1044 KALNDFVKLS SQKTPKPQTK ELMHLCMRQE AYLEALSHLQ SPLDPSTLLA ENSTTRP00000002855/1-1049 KALKDVVKVS SQKTTKPQTK ELMHLCMRQE TYLEALSHLQ SPLDPSTLLA ENSBTAP00000025274/1-1026 KALNDVVKVS SQKTTKPQTK ELMHLCMRQE TYLEALSHLQ SPLDPSTLLA BACU002999/1-1010 KALNDVVKVS SQKTTKPQTK ELMHLCMRQE TYLEALSHLQ SPLDPSTLLA bmy_06054T0/1-987 KALNDVVKVS SQKTTKPQAK ELMHLCMRQE TYLEALSHLQ SPLDPSTLLA 801 850 ENSP00000366563/1-1044 EVCVEQCTFM DSKMKPLWIM YSNEEAGSGG SVGIIFKNGD DLRQDMLTLQ ENSTTRP00000002855/1-1049 EVCVEQCTFM DSKMKPLWVL YSNEEAGSDG TVGIIFKNGD DLRQDMLTLQ ENSBTAP00000025274/1-1026 EVCVEQCTFM DSKMKPLWVM YSNEEAGSDG TVGIIFKNGD DLRQDMLTLQ BACU002999/1-1010 EVCVEQCTFM DSKMKPLWVM YSNEEAGSDG TVGIIFKNGD DLRQDMLTLQ bmy_06054T0/1-987 EVCVEQCTFM DSKMKPLWVM YSNEEAGSDG TVGIIFKNGD DLRQDMLTLQ 851 900 ENSP00000366563/1-1044 MIQLMDVLWK QEGLDLRMTP YGCLPTGDRT GLIEVVLRSD TIANIQLNKS ENSTTRP00000002855/1-1049 MIQLMDVLWK QEGLDLRMTP YGCLSTGDHT GLIEVVLHSD TIANIQLNKS ENSBTAP00000025274/1-1026 MIQLMDILWK QEGLDLRMTP YGCLSTGDRT GLIEVVLHSD TIANIQLNKS BACU002999/1-1010 MIQLMDVLWK QEGLDLRMTP YGCLSTGDHT GLIEVVLHSD TIANIQLNKS bmy_06054T0/1-987 MIQLMDVLWK QEGLDLRMTP YGCLSTGDHT GLIEVVLHSD TIANIQLNKS 901 950 ENSP00000366563/1-1044 NMAATAAFNK DALLNWLKSK NPGEALDRAI EEFTLSCAGY CVATYVLGIG ENSTTRP00000002855/1-1049 NMAATAAFNK DALLNWLKSK NPGEALDRAI EEFTLSCAGY CVATYVLGIG ENSBTAP00000025274/1-1026 NMAATAAFNK DALLNWLKSK NPGEALDRAI EEFTLSCA-- ---------- BACU002999/1-1010 NMAATAAFNK DALLNWLKSK NPGEALDRAI EEFTLSCAGY CVATYVLGIG bmy_06054T0/1-987 NMAATAAFNK DALLNWLKSK NPG------- ---------- ---------- 951 1000 ENSP00000366563/1-1044 DRHSDNIMIR ESGQLFHIDF GHFLGNFKTK FGINRERVPF ILTYDFVHVI ENSTTRP00000002855/1-1049 DRHSDNIMIR ENGQLFHIDF GHFLGNFKTK FGINRERVPF ILTYDFVHVI ENSBTAP00000025274/1-1026 ------VMIR ENGQLFHIDF GHFLGNFKTK FGINRERVPF ILTYDFVHVI BACU002999/1-1010 DRHSDNIMIR ENGQLFHIDF GHFLGNFKTK FGINRERVPF ILTYDFVHVI bmy_06054T0/1-987 ----DNIMIR ENGQLFHIDF GHFLGNFKTK FGINRERVPF ILTYDFVHVI 1001 1050 ENSP00000366563/1-1044 QQGKTNNSEK FERFRGYCER AYTILRRHGL LFLHLFALMR AAGLPELSCS ENSTTRP00000002855/1-1049 QQGKTNNSEK FERFRGYCER AYTILRRHGL LFLHLFALMR AAGLPELSCS ENSBTAP00000025274/1-1026 QQGKTNNSEK FERFRGYCER AYTILRRHGL LFLHLFALMR AAGLPELSCS BACU002999/1-1010 QQGKTNNSEK FERFRGYCER AYTILRRHGL LFLHLFALMR AAGLPELSCS bmy_06054T0/1-987 QQGKTNNSEK FERFRGYCER AYTILRRHGL LFLHLFALMR AAGLPELSCS 1051 1100 ENSP00000366563/1-1044 KDIQYLKDSL ALGKTEEEAL KHFRVKFNEA LRESWKTKVN WLAHNVSKDN ENSTTRP00000002855/1-1049 KDIQYLKDSL ALGKTEEEAL KHFRVKFNEA LRESWKTKVN WLAHNVSKDN ENSBTAP00000025274/1-1026 KDIQYLKDSL ALGKTEEEAL KHFRVKFNEA LRESWKTKVN WLAHNVSKDN BACU002999/1-1010 KDIQYLKDSL ALGKTEEEAL KHFRVKFNEA LRESWKTKVN WLAHNVSKDN bmy_06054T0/1-987 KDIQYLKDSL ALGKTEEEAL KHFRVKFNEA LRESWKTKVN WLAHNVSKDN 1101 1150 ENSP00000366563/1-1044 RQ ENSTTRP00000002855/1-1049 RQ ENSBTAP00000025274/1-1026 RQ BACU002999/1-1010 RQ bmy_06054T0/1-987 RQ