KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:42 2014 Check: 00 .. Name: ENSBTAP00000025281/1-287 Len: 307 Check: 4963 Weight: 1.00 Name: ENSP00000241261/1-281 Len: 307 Check: 1497 Weight: 1.00 Name: ENSTTRP00000012493/1-298 Len: 307 Check: 2007 Weight: 1.00 Name: bmy_16471T0/1-277 Len: 307 Check: 9394 Weight: 1.00 Name: BACU017811/1-288 Len: 307 Check: 3590 Weight: 1.00 // 1 50 ENSBTAP00000025281/1-287 MALKQAPGSR L-GQICMPIL IFTVLLQAFG MAVFYMYFNK ELKQMQNKYF ENSP00000241261/1-281 MAMMEVQGGP SLGQTCVLIV IFTVLLQSLC VAVTYVYFTN ELKQMQDKYS ENSTTRP00000012493/1-298 MALMQAPGGP SPGQTCALIL IFTVLLQALC VAVTYVYFTN ELKQMQDKYS bmy_16471T0/1-277 MALMQAPGGP SPGQTCALIL IFTVLLQALC VAVTYVYFTN ELKQMQDKYS BACU017811/1-288 MALMQAPGGP SPGQTCALIL IFTVLLQALC VAVTYVYFTN ELKQMQDKYS 51 100 ENSBTAP00000025281/1-287 KSGLACFLEE DDRSWDSRDD ESIINPCWEL KSQLYLFVKK MTLRTFEEMI ENSP00000241261/1-281 KSGIACFLKE DDSYWDPNDE ESMNSPCWQV KWQLRQLVRK MILRTSEETI ENSTTRP00000012493/1-298 KSGIACFLKD DDSSWDASDD ESMINPCWHL KWQLRQFVRK IILRTYEETI bmy_16471T0/1-277 KSGIACFLKD DDSSWDASDD ESMINPCWH- ---------- IILRTYEETI BACU017811/1-288 KSGIACFLKD DDSSWDASDD ESMINPCWHV KWQLRQFVRK IILRTYEETI 101 150 ENSBTAP00000025281/1-287 PTNPEKQYN- PYLEREKGPK RVAAHITGSN RKKSTLPVPG SKNEKAVGHK ENSP00000241261/1-281 STVQEKQQNI SPLVRERGPQ RVAAHITGTR GRSNTLSSPN SKNEKALGRK ENSTTRP00000012493/1-298 PSIPEKQQNI PHLEREKGPQ RVAAHITGTN RK-STFSVLS SKNQKALGQK bmy_16471T0/1-277 PSIPEKQQNI PHLEREKGPQ RVAAHITGTN RK-STFSVLS SKNEKALGQK BACU017811/1-288 PSIPEKQQNI PHLERAKGPQ RVAAHITGTN RR-STFSALS SKNEKALGQK 151 200 ENSBTAP00000025281/1-287 INSWESSRKG HSFLNNLYLR NGELVILQTG FYYIYSQTYF RFQEPEEVLG ENSP00000241261/1-281 INSWESSRSG HSFLSNLHLR NGELVIHEKG FYYIYSQTYF RFQE------ ENSTTRP00000012493/1-298 INSWESSRKG HSFLNNLHLR NGELVIHQTG FYYIYSQTYF RFQE------ bmy_16471T0/1-277 INSWESSRKG HSFLNNLHLR NGELVIHQTG FYYIYSQTYF RFQETDAVLG BACU017811/1-288 INSWESSRKG HSFLNNLHLR NGELVIHQTG FYYIYSQTYF RFQETEAVLG 201 250 ENSBTAP00000025281/1-287 TVSTEENRKK IKQMVQYIYK YTNYPDPILL MKSARNSCWS KDSEYGLYSI ENSP00000241261/1-281 --EIKENTKN DKQMVQYIYK YTSYPDPILL MKSARNSCWS KDAEYGLYSI ENSTTRP00000012493/1-298 --ETEENRKK NKQMVQYIYK CTSYPDPILL MKSARNSCWS KDSEYGLYSI bmy_16471T0/1-277 TVSTEENRKK NKQMVQYIYK CTGYPDPILL MKSARNSCWS KDSEYGLYSI BACU017811/1-288 TVSTEENRKK NKQMVQYIYK CTGYPDPILL MKSARNSCWS KDSEYGLYSI 251 300 ENSBTAP00000025281/1-287 YQGGIFELKE NDRIFVSVTN ERLVDLDQEA SFFGAF---- ---------- ENSP00000241261/1-281 YQGGIFELKE NDRIFVSVTN EHLIDMDHEA SFFGAF---- ---------- ENSTTRP00000012493/1-298 YQGGIFELKE NDRIFVSVTN EQLIDMDQEA SFFGLFNWLN DLQRKNSAPR bmy_16471T0/1-277 YQGGIFELKE NDRIFVSVTN EQLIDMDQEA SFFGAF---- ---------- BACU017811/1-288 YQGGIFELKE NDRIFVSVTN EQLIDMDQEA SFFGAF---- ---------- 301 350 ENSBTAP00000025281/1-287 ----LIG ENSP00000241261/1-281 ----LVG ENSTTRP00000012493/1-298 ETFHFSE bmy_16471T0/1-277 ----LIG BACU017811/1-288 ----LIG