KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:43 2014 Check: 00 .. Name: ENSP00000351686/1-1160 Len: 1160 Check: 9600 Weight: 1.00 Name: ENSBTAP00000025295/1-1154 Len: 1160 Check: 8589 Weight: 1.00 Name: ENSTTRP00000008715/1-1147 Len: 1160 Check: 5612 Weight: 1.00 Name: bmy_12504T0/1-1114 Len: 1160 Check: 9131 Weight: 1.00 Name: BACU010166/1-1145 Len: 1160 Check: 5158 Weight: 1.00 // 1 50 ENSP00000351686/1-1160 MDSKDESSHV WPTSAEHEQN AAQVHFVPDT GTVAQIVYTD DQVRPPQQVV ENSBTAP00000025295/1-1154 MDSKDEGSHV WPPAAEHEEN AAQVHFVPDA GTVAQIVYTD DQVRPPQQVV ENSTTRP00000008715/1-1147 MDSKDESSHV WPPAAEHEEN AAQVHFVPDA GTVAQIVYTD DQVRPPQQVV bmy_12504T0/1-1114 MDSKDESSHV WPPAAEHEEN AAQVHFVPDA GTVAQIVYTD DQ-------- BACU010166/1-1145 MDSKDESSHV WPPAAEHEEN ATQVHFVPDA GTVAQIVYTD DQVRPPQQVV 51 100 ENSP00000351686/1-1160 YTADGASYTS VDGPEHTLVY IHPVEAAQTL FTDPGQVAYV QQDATAQQAS ENSBTAP00000025295/1-1154 YTADGASYAS VDGPQHTLVY IHPVEAAQTL FTDPGQVAYV QQDATAQQAS ENSTTRP00000008715/1-1147 YTADGASYAS MDGPEHTLVH IHLVE-AQTL FTDPGQVAYV QQDATAQQAS bmy_12504T0/1-1114 ---------- ---------- --------TL FTDPGQVAYV QQDATAQQAS BACU010166/1-1145 YTADGSSYAS VDGPEHTLVY IHP-----TL FTDPGQVAYV QQDATAQQAS 101 150 ENSP00000351686/1-1160 LPVHNQVLPS IESVDGSDPL ATLQTPLGRL EAKEEEDEDE DEDTEEDEEE ENSBTAP00000025295/1-1154 LPVHNQVLPS IESVDGSDPL ATLQNPMARL EAKEEEDEDE DEDSEDEEEE ENSTTRP00000008715/1-1147 LPVHSQVLPS LEGVGGTDPL ATLQSPMARL EAKDEEDSED SE----EEEE bmy_12504T0/1-1114 LPVHNQVLPS IEGVDGSDPL ATLQNPMARL EAKEEEDEEE EEDSEEEDEE BACU010166/1-1145 LPVHNQVLPS IEGVDGSDPL ATLQNPMARL EAKEEEDEEE EEDSEEEDEE 151 200 ENSP00000351686/1-1160 DGEDTDLDDW EPDPPRPFDP HDLWCEECNN AHASVCPKHG PLHPIPNRPV ENSBTAP00000025295/1-1154 DGEDTDLDDW EPDPPRPFDP HDLWCEECNN AHSSVCPKHG PLHPIPNRPV ENSTTRP00000008715/1-1147 DGGDTDLDDW EPDPPRPFDP HDLWCEECNN AHSSVCPKHG PLHPIPNRPV bmy_12504T0/1-1114 DGEDTDLDDW EPDPPRPFDP HDLWCEECNN AHSSVCPKHG PLHPIPNRPV BACU010166/1-1145 DGEDTDLDDW EPDPPRPFDP HDLWCEECNN AHSSVCPKHG PLHPIPNRPV 201 250 ENSP00000351686/1-1160 LTRARASLPL VLYIDRFLGG VFSKRRIPKR TQFGPVEGPL VRGSELKDCY ENSBTAP00000025295/1-1154 LTRARASLPL VLYIDRFLGG VFSKRRIPKR TQFGPVEGPL VRESELKDCY ENSTTRP00000008715/1-1147 LTRARASLPL VLYIDRFLGG VFSKRRIPKR TQFGPVEGPL VRESELKDCY bmy_12504T0/1-1114 LTRARASLPL VLYIDRFLGG VFSKRRIPKR TQFGPVEGPL VRESELKDCY BACU010166/1-1145 LTRARASLPL VLYIDRFLGG VFSKRRIPKR TQFGPVEGPL VRESELKDCY 251 300 ENSP00000351686/1-1160 IHLKVSLDKG DRKERDLHED LWFELSDETL CNWMMFVRPA QNHLEQNLVA ENSBTAP00000025295/1-1154 IHLKVSLDKG DRKDRDLHED LWFELSDETL CNWMMFVRPA QNHLEQNLVA ENSTTRP00000008715/1-1147 IHLKVSLDKG DRKDRDLHED LWFELSDETL CNWMMFVRPA QNHLEQNLVA bmy_12504T0/1-1114 IHLKVSLDKG DRKDRDLHED LWFELSDETL CNWMMFVRPA QNHLEQNLVA BACU010166/1-1145 IHLKVSLDKG DRKDRDLHED LWFELSDETL CNWMMFVRPA QNHLEQNLVA 301 350 ENSP00000351686/1-1160 YQYGHHVYYT TIKNVEPKQE LKVWYAASYA EFVNQKIHDI SEEERKVLRE ENSBTAP00000025295/1-1154 YQYGHHVYYT TIKNVEPKQE LKVWYAASYA EFVNRKIHDI SEEERKVLRE ENSTTRP00000008715/1-1147 YQYGHHVYYT TIKNVEPKQE LKVWYAASYA EFVNRKIHDI SEEERKVLRE bmy_12504T0/1-1114 YQYGHHVYYT TIKNVEPKQE LKVWYAASYA EFVNRKIHDI SEEERKVLRE BACU010166/1-1145 YQYGHHVYYT TIKNVEPKQE LKVWYAASYA EFVNRKIHDI SEEERKVLRE 351 400 ENSP00000351686/1-1160 QEKNWPCYEC NRRFISSEQL QQHLNSHDEK LDVFSRTRGR GRGRGKRRFG ENSBTAP00000025295/1-1154 QEKNWPCYEC NRRFISSEQL QQHLNSHDEK LDVFSRARGR GRGRGKRRFG ENSTTRP00000008715/1-1147 QEKNWPCYEC NRRFISSEQL QQHLNSHDEK LDVFSRTRGR GRGRGKRRFG bmy_12504T0/1-1114 QEKNWPCYEC NRRFISSEQL QQHLNSHDEK LDVFSRTRGR GRGRGKRRFG BACU010166/1-1145 QEKNWPCYEC NRRFVSSEQL QQHLNSHDEK LDVFSRTRGR GRGRGKRRFG 401 450 ENSP00000351686/1-1160 PGRRPGRPPK FIRLEITSEN GEKSDDGTQD LLHFPTKEQF DEAEPATLNG ENSBTAP00000025295/1-1154 PGRRPGRPPK FIRLEITSEN GEKCDDGTQD LLHFSTKEQF DEAEAATPNG ENSTTRP00000008715/1-1147 PGRRPGRPPK FIRLEITSEN GEKCDDGTQD LLHFPTKEQF DEAEPATLNG bmy_12504T0/1-1114 PGRRPGRPPK FIRLEITSEN GEKCDDGTQD LLYFPTKEQF DEAEPATLNG BACU010166/1-1145 PGRRPGRPPK FIRLEITSEN GEKCDDGTQD LLHFPTKEQF DEAEPATLNG 451 500 ENSP00000351686/1-1160 LDQPEQTTIP IPQLPQETQS SLEHEPETHT LHLQPQHEES VVPTQSTLTA ENSBTAP00000025295/1-1154 LDQPEQPTLP LPQLPPEAPS SLEQEPDTHE LHLQPQHEES VLPAQSTLTA ENSTTRP00000008715/1-1147 LDQTEQPALA VPQLPPEAQS SLEHETETHE LHLQPQHEES VLPAQSTLTA bmy_12504T0/1-1114 LDQPEQPALA VPQLPPEAQS SLEHETETHE LHLQPQHEES VLPAQSTLTA BACU010166/1-1145 LDQPEQPALA VPPLPPEAQS SLEHETETHE LHLQPQHEES ALPAQSTLTA 501 550 ENSP00000351686/1-1160 DDMRRAKRIR LELQNAALQH LFIRKSFRPF KCLQCGKAFR EKDKLDQHLR ENSBTAP00000025295/1-1154 DDMRRAKRIR LELQNAALQH LFIRKSFRPF KCLHCGKAFR EKDKLDQHVR ENSTTRP00000008715/1-1147 DDMRRAKRIR VIFQNAALQH LFIRKSFRPF KCLQCGKAFR EKDKLDQHLR bmy_12504T0/1-1114 DDMRRAKRIR ----NAALQH LFIRKSFRPF KCLQCGKAFR EKDKLDQHLR BACU010166/1-1145 DDLRRAKRIR ----NAALQH LFIRKSFRPF KCLQCGKAFR EKDKLDQHLR 551 600 ENSP00000351686/1-1160 FHGREGNCPL TCDLCNKGFI SSTSLESHMK LHSDQKTYSC IFCPESFDRL ENSBTAP00000025295/1-1154 FHGREGNCPL TCDLCNKGFI SSASLESHMK LHSDQKTYSC IFCPESFDRL ENSTTRP00000008715/1-1147 FHGREGSCPL TCDLCNKGFI SSASLESHMK LHSDQKTYSC IFCPESFDRL bmy_12504T0/1-1114 FHGREGSCPL TCDLCNKGFI SSASLESHMK LHSDQKTYSC IFCPESFDRL BACU010166/1-1145 FHGREGSCPL TCDLCNKGFI SSASLESHMK LHSDQKTYSC IFCPESFDRL 601 650 ENSP00000351686/1-1160 DLLKDHVAIH INDGYFTCPT CKKRFPDFIQ VKKHVRSFHS EKIYQCTECD ENSBTAP00000025295/1-1154 DLLKDHVAIH INDGYFSCPT CKKRFPDFIQ VKKHVRSFHS EKIYQCTECD ENSTTRP00000008715/1-1147 DLLKDHVAIH ISDGYFTCPT CKKRFPDFIQ VKKHVRSFHS EKIYQCTECD bmy_12504T0/1-1114 DLLKDHVAIH ISDGYFTCPT CKKRFPDFIQ VKKHVRSFHS EKIYQCTECD BACU010166/1-1145 DLLKDHVAIH ISDGYFTCPT CKKRFPDFIQ VKKHVRSFHS EKIYQCTECD 651 700 ENSP00000351686/1-1160 KAFCRPDKLR LHMLRHSDRK DFLCSTCGKQ FKRKDKLREH MQRMHNPERE ENSBTAP00000025295/1-1154 KAFCRPDKLR LHMLRHSDRK DFLCSTCGKQ FKRKDKLREH MQRMHNPERE ENSTTRP00000008715/1-1147 KAFCRPDKLR LHMLRHSDRK DFLCSTCGKQ FKRKDKLREH MQRMHNPERE bmy_12504T0/1-1114 KAFCRPDKLR LHMLRHSDRK DFLCSTCGKQ FKRKDKLREH MQRMHNPERE BACU010166/1-1145 KAFCRPDKLR LHMLRHSDRK DFLCSTCGKQ FKRKDKLREH MQRMHNPERE 701 750 ENSP00000351686/1-1160 AKKADRISRS KTFKPRITST DYDSFTFKCR LCMMGFRRRG MLVNHLSKRH ENSBTAP00000025295/1-1154 AKKADRSSRS KTFKPRITST DYDSFTFKCR LCMMGFRRRG MLVNHLSKRH ENSTTRP00000008715/1-1147 AKKADRISRS KTFKPRITST DYDSFTFKCR LCMMGFRRRG MLVNHLSKRH bmy_12504T0/1-1114 ARKADRISRS KTFKPRITST DYDSFTFKCR LCMMGFRRRG MLVNHLSKRH BACU010166/1-1145 AKKADRISRS KTFKPRITST DYDSFTFKCR LCMMGFRRRG MLVNHLSKRH 751 800 ENSP00000351686/1-1160 PDMKIEEVPE LTLPIIKPNR DYFCQYCDKV YKSASKRKAH ILKNHPGAEL ENSBTAP00000025295/1-1154 PDMKIEEVPE LTLPIIKPNR DYFCQYCDKV YKSASKRKAH ILKNHPGAEL ENSTTRP00000008715/1-1147 PDMKIEEVPE LTLPIIKPNR DYFCQYCDKV YKSASKRKAH ILKNHPGAEL bmy_12504T0/1-1114 PDMKIEEVPE LTLPIIKPNR DYFCQYCDKV YKSASKRKAH ILKNHPGAEL BACU010166/1-1145 PDMKIEEVPE LTLPIIKPNR DYFCQYCDKV YKSASKRKAH ILKNHPGAEL 801 850 ENSP00000351686/1-1160 PPSIRKLRPA GPGEPDPMLS THTQLTGTIA TPPVCCPHCS KQYSSKTKMV ENSBTAP00000025295/1-1154 PPSIRKLRPA GPGEPDPMLS THTQLTGTIA TPPVCCPHCS KQYSSKTKMV ENSTTRP00000008715/1-1147 PPSIRKLRPA GPGEPDPMLS THTQLTGTIA TPPVCCPHCS KQYSSKTKMV bmy_12504T0/1-1114 PPSIRKLRPA GPGEPDPMLS THTQLTGTIA TPPVCCPHCS KQYSSKTKMV BACU010166/1-1145 PPSIRKLRPA GPGEPDPMLS THTQLTGTIA TPPVCCPHCS KQYSSKTKMV 851 900 ENSP00000351686/1-1160 QHIRKKHPEF AQLSNTIHTP LTTAVISATP AVLTTDSATG ETVVTTDLLT ENSBTAP00000025295/1-1154 QHIRKKHPEY AQLPNTIHTP LTTAVISATP AVLTTDSATG ETVVTTDLLT ENSTTRP00000008715/1-1147 QHIRKKHPEY AQLPNTIHTP LTTAVISAAP AVLTTDSATG ETVVTTDLLT bmy_12504T0/1-1114 QHIRKKHPEY AQLPNTIHAP LTTAVISAAP AVLTTDSATG ETVVTTDLLT BACU010166/1-1145 QHIRKKHPEY AQLPNTIHTP LTTAVISTAP AVLTTDSATG ETVVTTDLLT 901 950 ENSP00000351686/1-1160 QAMTELSQTL TTDYRTPQGD YQRIQYIPVS QSASGLQQPQ HIQLQVVQVA ENSBTAP00000025295/1-1154 QAMTELSQTL TTDYRTPQGD YQRIQYIPVS QSTSGLQQPQ HIQLQVVQVA ENSTTRP00000008715/1-1147 QAMTELSQTL TTDYRTPQGD YQRIQYIPVS QSTSGLQQPQ HIQLQVVQVA bmy_12504T0/1-1114 QAMTELSQTL TTDYRTPQGD YQRIQYIPVS QSTSGLQQPQ HIQLQVVQVA BACU010166/1-1145 QAMTELSQTL TTDYRTPQGD YQRIQYIPVS QSTSGLQQPQ HIQLQVVQVA 951 1000 ENSP00000351686/1-1160 SATSPHQSQQ STVDVGQLHD PQPYPQHAIQ VQHIQVSEPT ASAPSSAQVS ENSBTAP00000025295/1-1154 PATSPHQSQQ STVDVAQLHD PQTYTQHAIQ VQHIQVTEPP APAMSTSQVA ENSTTRP00000008715/1-1147 PATSPHQSQQ STVDVAQLHD PQTYTQHAIQ VQHIQVTEPP APAAPASQVA bmy_12504T0/1-1114 PATSPHQSQQ STVDVAQLHD PQTYTQHAIQ VQHIQVTEPP TPAAPASQVA BACU010166/1-1145 PATSPHQSQQ STVDVAQLHD PQTYTQHAIQ VQHIQVTEPP APAAPASQVA 1001 1050 ENSP00000351686/1-1160 GQPLSPSAQQ AQQGLSPSHI QGSSSTQGQA LQQQQQQQQN SSVQHTYLPS ENSBTAP00000025295/1-1154 GQPLSPSPQQ SQQGLSPPHV AGSSS-QGQA L---QQPPQG STVQHTYLPN ENSTTRP00000008715/1-1147 GQPLSPSPQQ SQQGLSPSQV AGSSS-QGQA L---QQQPQS TTVQHTYLPN bmy_12504T0/1-1114 GQPLSPSPQQ SQQGLSPSQV AGSSS-QGQA L---QQQPQS TTVQHTYLPN BACU010166/1-1145 GQPLSPSPQQ SQQGLSPSQV AGSSS-QGQA L---QQQPQS TTVQHTYLPN 1051 1100 ENSP00000351686/1-1160 AWNSFRGYSS EIQMMTLPPG QFVITDSGVA TPVTTGQVKA VTSGHYVLSE ENSBTAP00000025295/1-1154 TWNSFRGYSS EIQMMTLPPG QFVITDSGVA TPVTTGQVKA VTPGHYVLSE ENSTTRP00000008715/1-1147 AWNSFRGYSE --QMMTLPPG QFVITDSGVA TPVTTGQVKA VTPGHYVLSE bmy_12504T0/1-1114 AWNSFRGYSS EIQMMTLPPG QFVITDSGVA TPVTTGQVKA VTPGHYVLSE BACU010166/1-1145 AWNSFRGYSS EIQMMTLPPG QFVITDSGVA TPVTTGQVKA VTPGHYVLSE 1101 1150 ENSP00000351686/1-1160 SQSELEEKQT SALSGGVQVE PPAHSDSLDP QTNSQQQTTQ YIITTTTNGN ENSBTAP00000025295/1-1154 SQSELEEKQA SALSGGVQVQ PAAHSD-LDP QTTSQQP-TQ YIITTTTNGN ENSTTRP00000008715/1-1147 SQSELEEKQA SALTGGVQVQ PTAHGD-LDP QTTSQQP-TQ YIITTTTNGN bmy_12504T0/1-1114 SQSELEEKQA SALTGGVQVQ PTAHGD-LDP QTTSQQP-TQ YIITTTTNGN BACU010166/1-1145 SQSELEEKQA SALTGGVQVQ PTAHGD-LDP QTTSQQP-TQ YIITTTTNGN 1151 1200 ENSP00000351686/1-1160 GSSEVHITKP ENSBTAP00000025295/1-1154 GSSEVHITKP ENSTTRP00000008715/1-1147 GSSEVHITKP bmy_12504T0/1-1114 GSSEVHITKP BACU010166/1-1145 GSSEVHITKP