KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:44 2014 Check: 00 .. Name: ENSP00000293883/1-790 Len: 1220 Check: 2126 Weight: 1.00 Name: bmy_01886T0/1-1067 Len: 1220 Check: 8262 Weight: 1.00 Name: BACU009249/1-966 Len: 1220 Check: 3619 Weight: 1.00 Name: ENSTTRP00000003846/1-917 Len: 1220 Check: 9249 Weight: 1.00 Name: ENSBTAP00000025300/1-790 Len: 1220 Check: 4522 Weight: 1.00 // 1 50 ENSP00000293883/1-790 ---------- ---------- ---------- ---------- ---------- bmy_01886T0/1-1067 ---------- ---------- ---------- ---------- ---------- BACU009249/1-966 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003846/1-917 AGKKRTTSGG GQERDGLLPA RRFLPAPAFQ RDFADGGNHL APRAGLTDRT ENSBTAP00000025300/1-790 ---------- ---------- ---------- ---------- ---------- 51 100 ENSP00000293883/1-790 ---------- -MEKMSRVTT ALGGSVLTGR TMHCHLDAPA NAISVCRDAA bmy_01886T0/1-1067 ---------- -MEKMSRVTT ALGGSTLTGR TMHCHLDAPA NAISVCRDAA BACU009249/1-966 ---------- -MEKMSRVTT ALGGSTLTGR TMHCHLDAPA NAISVCRDAA ENSTTRP00000003846/1-917 SSDYPNLAVG AMEKMSRVTT ALGGSTLTGR TMHCHLDAPA NAISVCRDAA ENSBTAP00000025300/1-790 ---------- -MEKMSRVTT ALGGSVLTGR TMHCHLDAPA NAISVCRDAA 101 150 ENSP00000293883/1-790 QVVVAGRSIF KIYAIEEEQF VEKLNLRVGR KPSLNLSCAD VVWHQMDENL bmy_01886T0/1-1067 QVVVAGRSIF KIYAIEEEQF VEKLNLRVGR KPSLNLSCAD VVWHQMDENL BACU009249/1-966 QVVVAGRSIF KIYAIEEEQF VEKLNLRVGR KPSLNLSCAD VVWHQMDENL ENSTTRP00000003846/1-917 QVVVAGRSIF KIYAIEEEQF VEKLNLRVGR KPSLNLSCAD VVWHQMDENL ENSBTAP00000025300/1-790 QVVVAGRSIF KIYAIEEEQF VEKLNLRVGR KPSLNLSCAD VVWHQMDENL 151 200 ENSP00000293883/1-790 LATAATNGVV VTWNLGRPSR NKQDQLFTEH KRTVNKVCFH PTEAHVLLSG bmy_01886T0/1-1067 LATAATNGVV VTWNLGRPSR NKQDQLFTEH KRTVNKVCFH PTEAHVLLSG BACU009249/1-966 LATAATNGVV VTWNLGRPSR NKQDQLFTEH KRTVNKVCFH PTEAHVLLSG ENSTTRP00000003846/1-917 LATAATNGVV VTWNLGRPSR NKQDQLFTEH KRTVNKVCFH PTEAHVLLSG ENSBTAP00000025300/1-790 LATAATNGVV VTWNLGRPSR NKQDQLFTEH KRTVNKVCFH PTEAHVLLSG 201 250 ENSP00000293883/1-790 SQDGFMKCFD LRRKDSVSTF S--------- ---------- ---------- bmy_01886T0/1-1067 SQDGFMKCFD LRRKDSVSTF S--------- ---------- ---------- BACU009249/1-966 SQDGFMKCFD LRRKDSVSTF S--------- ---------- ---------- ENSTTRP00000003846/1-917 SQDGFMKCFD LRRKDSVSTF SGEALEAGPR DCIQPTEAPV HSMLYLVLKP ENSBTAP00000025300/1-790 SQDGFMKCFD LRRKDSVSTF S--------- ---------- ---------- 251 300 ENSP00000293883/1-790 ---------- ---------- ---------- -------GQS ESVRDVQFSI bmy_01886T0/1-1067 ---------- ---------- ---------- -------GQS ESVRDVQFSI BACU009249/1-966 ---------- ---------- ---------- -------GQS ESVRDVQFSI ENSTTRP00000003846/1-917 HSFAQGLMSV AESRENEVQE PWQYLLHPLG LWPAPWAGQS ESVRDVQFSI ENSBTAP00000025300/1-790 ---------- ---------- ---------- -------GQS ESVRDVQFSI 301 350 ENSP00000293883/1-790 RDYFTFASTF ENGNVQLWDI RRPDRCERMF TAHNGPVFCC DWHPEDRGWL bmy_01886T0/1-1067 RDYFTFASTF ENGNVQLWDI RRPDRCERMF TAHNGPVFCC DWHPEDRGWL BACU009249/1-966 RDYFTFASTF ENGNVQLWDI RRPDRCERMF TAHNGPVFCC DWHPEDRGWL ENSTTRP00000003846/1-917 RDYFTFASTF ENGNVQLWDI RRPDRCERMF TAHNGPVFCC DWHPEDRGWL ENSBTAP00000025300/1-790 RDYFTFASTF ENGNVQLWDI RRPDRCERMF TAHNGPVFCC DWHPEDRGWL 351 400 ENSP00000293883/1-790 ATGGRDKMVK VWDMTTHRAK EMHCVQTIAS VARVKWRPEC RHHLATCSMM bmy_01886T0/1-1067 ATGGRDKMVK VWDMTTHRAK EVHCVQTIAS VARVKWRPEC RHHLATCSMM BACU009249/1-966 ATGGRDKMVK VWDMTTHRAK EVHCVQTIAS VARVKWRPEC RHHLATCSMM ENSTTRP00000003846/1-917 ATGGRDKMVK VWDMTTHRAK EVHCVQTIAS VARVKWRPEC RHHLATCSMM ENSBTAP00000025300/1-790 ATGGRDKMVK VWDMATHRAK EVHCVQTIAS VARVKWRPEC RHHLATCSMM 401 450 ENSP00000293883/1-790 VDHNIYVWDV RRPFVPAAMF EEHRDVTTGI AWRHPHDPSF LLSGSKDSSL bmy_01886T0/1-1067 VDHNIYVWDV RRPFVPAAMF EEHRDVTTGI AWRHPHDPSF LLSGSKDSTL BACU009249/1-966 VDHNIYVWDV RRPFVPAAMF EEHRDVTTGI AWRHPHDPSF LLSGSKDSTL ENSTTRP00000003846/1-917 VDHNIYVWDV RRPFVPAAMF EEHRDVTTGI AWRHPHDPSF LLSGSKDSTL ENSBTAP00000025300/1-790 VDHNVYVWDV RRPFVPAAMF EEHRDVTTGI AWRHPHDPSF LLSGSKDSTL 451 500 ENSP00000293883/1-790 CQHLFRDASQ PVERANPEGL CYGLFGDLAF AAKESLVAAE SGRKPYTGDR bmy_01886T0/1-1067 CQHLFRDASQ PVERANPEGL CYGLFGDLAF AAKESLVATE SGRKPYTGDR BACU009249/1-966 CQHLFRDASQ PVERANPEGL CYGLFGDLAF AAKESLVATE SGRKPYTGDR ENSTTRP00000003846/1-917 CQHLFRDASQ PVERANPEGL CYGLFGDLAF AAKESLVATE SGRKPYTGDR ENSBTAP00000025300/1-790 CQHLFRDASQ PVERANPEGL CYGLFGDLAF AAKESLVATE SGRKPYAGDR 501 550 ENSP00000293883/1-790 RHPIFFKRKL DPAEPFAGLA SSALSVFETE PGGGGMRWFV DTAERYALAG bmy_01886T0/1-1067 RHPIFFKRKL DPAEPFSGLA SSALSVFEME PGSSSMSWFV DTAERYALAG BACU009249/1-966 RHPIFFKRKL DPAEPFSGLA SSALSVFEME PGSSSMSWFV DTAERYALAG ENSTTRP00000003846/1-917 RHPIFFKRKL DPAEPFSGLA SSALSVFEME PGSSSMSWFV DTAERYALAG ENSBTAP00000025300/1-790 RHPIFFKRKL DPAEPFAGLA SSALNVFEIE PGSGSMSWFV DTAERYALAG 551 600 ENSP00000293883/1-790 RPLAELCDHN AKVARELGRN QVAQTWTMLR IIYCSPGLVP TANLNHSVGK bmy_01886T0/1-1067 RPLAELCDHN AKVARDLGRN QVAQTWTMLR IIYCSPGLVP TTSLNHSVGK BACU009249/1-966 RPLAELCDHN AKVARDLGRN QVAQTWTMLR IIYCSPGLVP TTNLNHSVGK ENSTTRP00000003846/1-917 RPLAELCDHN AKVARELGRN QVAQTWTMLR IIYCSPGLVS TTNLNHSVGK ENSBTAP00000025300/1-790 RPLAELCDHN AKVARELGRN QVAQTWTMLR IIYCSPGLVP TTNLNHSMGK 601 650 ENSP00000293883/1-790 GGSCGLPLMN SFNLKDMAPG LGSETRLDRS KGDARSDTVL LDSSATLITN bmy_01886T0/1-1067 GSSCGLPLMN SFNLKDMAPG LGSETRLDRS KGDARSDTVL LDSSATLITN BACU009249/1-966 GSSCGLPLMN SFNLKDMAPG LGSETRLDRS KGDARSDTVL LDSSATLITN ENSTTRP00000003846/1-917 GSSCGLPLMN SFNLKDMAPG LGSETRLDRS KGDARSDTVL LDSSATLITN ENSBTAP00000025300/1-790 GSSCGLPLMN SFNLKDMAPG LGSETRLDRS KGDTRSDTVL LDSSATLITN 651 700 ENSP00000293883/1-790 EDNEETEGSD VPADYLLGDV EGEEDELYLL DPEHAHPEDP ECVLPQEAFP bmy_01886T0/1-1067 EDNEETEGSD VPADYLLGDV EGEDDELYLL DPEHAHSEEP EYVLPQEAFP BACU009249/1-966 EDNEETEGSD VPADYLLGDV EGEDDELYLL DPEHAHSEEP EYVLPQEAFP ENSTTRP00000003846/1-917 EDNEETEGSD VPADYLLDDV EGEDDELYLL DPEHAHSEEP EYVLPQEAFP ENSBTAP00000025300/1-790 EDNEETEGSD VPTDYLLGDV EGEDDELYLL DPEHAHSEEP EYVLPQEAFP 701 750 ENSP00000293883/1-790 LRHEIVDTPP GPEHLQDKAD SPHVSGSEAD VASLAPVDSS FSLLSVSHAL bmy_01886T0/1-1067 LRHEIVDTPP GPEHLQDKAD SPHVSGNEAD AASLVPVDSS FSLISVSHAL BACU009249/1-966 LRHEIVDTPP GPEHLQDKAD SPHVSGNEAD AASLVPVDSS FSLISVSHAL ENSTTRP00000003846/1-917 LRHEIVDTPP GPEHLQDKAD SPHVSGNEAD AASLVPVDSS FSLISVSHAL ENSBTAP00000025300/1-790 LRHEIVDTPP GPEHLQDKAD SPHVSGSEAD AASLVPVDSS FSLISVSHAL 751 800 ENSP00000293883/1-790 YDSRLPPDFF GVLVRDMLHF YAEQGDVQMA VSVLIVLGER VRKDIDEQT- bmy_01886T0/1-1067 YDSRLPPDFF SALVCDMLRF YAEQGDVQMA VSVLIVLGER VRKDIDEQTQ BACU009249/1-966 YDSRLPPDFF SALVCDMLRF YAEQGDVQMA VSVLIVLGER VRKDIDEQT- ENSTTRP00000003846/1-917 YDSRLPPDFF SALVCDMLRF YAEQGDVQMA VSVLIVLGER VRKDIDEQT- ENSBTAP00000025300/1-790 CDSRLPPDFF SALVCDMLRF YAEQGDVQMA VSVLIVLGER VRKDIDEQT- 801 850 ENSP00000293883/1-790 ---------- ---------- ---------- ---------- ---------- bmy_01886T0/1-1067 VGDRVWGVSL EQLPPPGLPL HAPPAPAPLS VPSTLGGSSS VCRKPWSLTS BACU009249/1-966 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000003846/1-917 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025300/1-790 ---------- ---------- ---------- ---------- ---------- 851 900 ENSP00000293883/1-790 -------QEH WYTSYIDLLQ RFRLWNVSNE VVKLSTSRAV SCLNQASTTL bmy_01886T0/1-1067 FLPSLHHQEH WYTSYIDLLQ RFCLWNVSNQ VVKLSTSRAI SCLNQASTTL BACU009249/1-966 -------QEH WYTSYIDLLQ RFCLWNVSNQ VVKLSTSRAI SCLNQASTTL ENSTTRP00000003846/1-917 -------QEH WYTSYIDLLQ RFCLWNVSNQ VVKLSTSRAI SCLNQASTTL ENSBTAP00000025300/1-790 -------QEH WYTSYIDLLQ RFCLWNVSNQ VVKLSTSRAI SCLNQASTTL 901 950 ENSP00000293883/1-790 HVNCSHCKRP MSSRGWVCDR CHRCASMCAV CHHVVKGLFV WCQGCSHGGH bmy_01886T0/1-1067 HVNCSHCKRP MSSRGWVCDR CHHCASMCAV CHHVVKGLFV WCQGCSHGGH BACU009249/1-966 HVNCSHCKRP MSSRGWVCDS YAFSRP---- ---------V ILQGLTDNSR ENSTTRP00000003846/1-917 HVNCSHCKRP MSSRGWVCDR CHHCASMCAV CHHVVKGLFV WCQGCSHGGH ENSBTAP00000025300/1-790 HVNCSHCKRP MSSRGWVCDR CRRCASMCAV CHHVVKGLFV WCQGCSHGGH 951 1000 ENSP00000293883/1-790 LQHI------ ---------- ---------- ---------- ---------- bmy_01886T0/1-1067 LQHIMKRRPG PGAPAAVAEE ERCTVERRAD LSYAEFVQRY AFSRPVILQG BACU009249/1-966 FRDL------ ---------- ---------- ---------- ---------- ENSTTRP00000003846/1-917 LQHI------ ---------- ---------- ---------- ---------- ENSBTAP00000025300/1-790 LQHI------ ---------- ---------- ---------- ---------- 1001 1050 ENSP00000293883/1-790 ---------- ---------- ---------- ---------- ---------- bmy_01886T0/1-1067 LTDNSRFRDL CSRQRLLALF GDSVVRLSTA NTYSYQKVDL PFQEYVEQML BACU009249/1-966 ---------- CSRQRLLALF GDSVVRLSTA NTYSYQKVDL PFQEYVEQML ENSTTRP00000003846/1-917 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025300/1-790 ---------- ---------- ---------- ---------- ---------- 1051 1100 ENSP00000293883/1-790 ---------- ---------- -MKWLEGSSH C--------- ---------- bmy_01886T0/1-1067 HPQDPFSMGN DTLYFFGDNN FTEWASLFRH YSPPPFSLLG TIPAYSFG-- BACU009249/1-966 HPQDPFSMGN DTLYFFGDNN FTEWASLFRH YSPPPFSLLX XXXXXXAGGC ENSTTRP00000003846/1-917 ---------- ---------- -MKWLEGSSH C--------- ---------- ENSBTAP00000025300/1-790 ---------- ---------- -MKWLEGSSH C--------- ---------- 1101 1150 ENSP00000293883/1-790 ---------- ---------- ----PAGCGH LCEYS----- ---------- bmy_01886T0/1-1067 ---------- ---------- ----IAGAGS GVPFHWHGPG FSEVIYGRKR BACU009249/1-966 PAGPGDLGTG WGRIRLGNQL LITHPTGAGS GVPFHWHGPG FSEVIYGRKR ENSTTRP00000003846/1-917 ---------- ---------- ----PAGCGH LCEYS----- ---------- ENSBTAP00000025300/1-790 ---------- ---------- ----PAGCGH LCEYS----- ---------- 1151 1200 ENSP00000293883/1-790 ---------- ---------- ---------- ---------- ---------- bmy_01886T0/1-1067 WFLYPPAKTP EFHPNKTTLA WLRDTYPALA LSARPLECTI HAGEVLYFPD BACU009249/1-966 WFLYPPAKTP EFHPNKTTLA WLRDTYPALA LSARPLECTI HAGEVLYFPD ENSTTRP00000003846/1-917 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025300/1-790 ---------- ---------- ---------- ---------- ---------- 1201 1250 ENSP00000293883/1-790 ---------- ---------- bmy_01886T0/1-1067 RWWHATLNLD TSVFISTFLS BACU009249/1-966 RWWHATLNLD TSVFISTFLS ENSTTRP00000003846/1-917 ---------- ---------- ENSBTAP00000025300/1-790 ---------- 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