KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:45 2014 Check: 00 .. Name: ENSBTAP00000025305/1-426 Len: 432 Check: 8471 Weight: 1.00 Name: ENSP00000426548/1-428 Len: 432 Check: 5999 Weight: 1.00 Name: ENSTTRP00000000719/1-427 Len: 432 Check: 5927 Weight: 1.00 Name: bmy_15316T0/1-332 Len: 432 Check: 1875 Weight: 1.00 Name: BACU015989/1-293 Len: 432 Check: 9409 Weight: 1.00 // 1 50 ENSBTAP00000025305/1-426 MALSGNCSRY YSREQGAAVP NSFPEVVELN VGGQVYFTRH STLISIPHSL ENSP00000426548/1-428 MALSGNCSRY YPREQGSAVP NSFPEVVELN VGGQVYFTRH STLISIPHSL ENSTTRP00000000719/1-427 MALSGNCSRY YPREQGAAVP NSFPEVVELN VGGQVYFTRH STLISIPHSL bmy_15316T0/1-332 MALSGNCSRY YPREQGAAVP NSFPEVVELN VGGQVYFTRH STLISIPHSL BACU015989/1-293 MALSGNCSRY YPREQGAAVP NAFPEVVELN VGGQVYFTRH STLISIPHSL 51 100 ENSBTAP00000025305/1-426 LWKMFSPKRD TANDLAKDSK GRFFIDRDGF LFRYILDYLR DRQVVLPDHF ENSP00000426548/1-428 LWKMFSPKRD TANDLAKDSK GRFFIDRDGF LFRYILDYLR DRQVVLPDHF ENSTTRP00000000719/1-427 LWKMFSPKRD TANDLAKDSK GRFFIDRDGF LFRYILDYLR DRQVVLPDHF bmy_15316T0/1-332 LWKMFSPKRD TANDLAKDSK GRFFIDRDGF LFRYILDYLR DRQVVLPDHF BACU015989/1-293 LWKMFSPKRD TANDLAKDSK GRFFIDRDGF LFRYILDYLR DRQVVLPDHF 101 150 ENSBTAP00000025305/1-426 PERGRLKREA EYFQLPDLVK LLTPDEIKQS PDEFCHSDFE DASQGSDTRI ENSP00000426548/1-428 PEKGRLKREA EYFQLPDLVK LLTPDEIKQS PDEFCHSDFE DASQGSDTRI ENSTTRP00000000719/1-427 PERGRLKREA EYFQLPDLVK LLTPDEIKQS PDEFCHSDFE DASQGSDTRI bmy_15316T0/1-332 PERGRLKREA EYFQLPDLVK LLSPDEIKQS PDEFCHSDFE DASQGSDTRI BACU015989/1-293 PERGRLKREA EYFQLPDLVK LLSPDEIKQS PDEFCHSDFE DASQGSDTRI 151 200 ENSBTAP00000025305/1-426 CPPSSLLPAD RKWGFITVGY RGSCTMGREG QADAKFRRVP RILVCGRISL ENSP00000426548/1-428 CPPSSLLPAD RKWGFITVGY RGSCTLGREG QADAKFRRVP RILVCGRISL ENSTTRP00000000719/1-427 CPPSSLLPAD RKWGFITVGY RGSCTMGREG QADAKFRRVP RILVCGRISL bmy_15316T0/1-332 CPPSSLLPAD RKWGFITVGY RGSCTMGREG QADAKFRRVP RILVCGRISL BACU015989/1-293 CPPSSLLPAD RKWGFITVGY RGSCTMGREG QADAKFRRVP RILVCGRISL 201 250 ENSBTAP00000025305/1-426 AKEVFGETLN ESRDPDRAPE RYTSRFYLKF RHLERAFDMV SECGRQMVAC ENSP00000426548/1-428 AKEVFGETLN ESRDPDRAPE RYTSRFYLKF KHLERAFDML SECGFHMVAC ENSTTRP00000000719/1-427 AKEVFGETLN ESRDPDRAPE RYTSRFYLKF RHLERAFDML SECGFHMVAC bmy_15316T0/1-332 AKEVFGETLN ESRDPDRAPE RYTSRFYLKF RHLERAFDML SECGFHMVAC BACU015989/1-293 AKEVFGETLN ESRDPDRAPE RYTSRFYLKF RHLERAFDML SECGFHMVAC 251 300 ENSBTAP00000025305/1-426 NSSITLG--- --QQRCVYLA FTPWVLCFFA GEPS-RWSSS HCDCCCKNGK ENSP00000426548/1-428 NSSVTASFIN QYTDDKIWSS YTEYV---FY REPS-RWSPS HCDCCCKNGK ENSTTRP00000000719/1-427 NSSVTASFVN QYTDD-VWSS YTEYV---FY REPS-RWSSS HCDCCCKNGK bmy_15316T0/1-332 NSSVTASFVN QYTDDKIWSS YTEYV---FY LIPAFKFSLY ---------- BACU015989/1-293 NSSVTASFVN QYTDDKIWSS YTEYV---FY R----KYHGF ---------- 301 350 ENSBTAP00000025305/1-426 GDKEGESGTS CNDLSTSSCD SQSEASSPQE TVICGPVTRQ TNIQTLDRPI ENSP00000426548/1-428 GDKEGESGTS CNDLSTSSCD SQSEASSPQE TVICGPVTRQ TNIQTLDRPI ENSTTRP00000000719/1-427 GDKEGESGTS CNDLSSSSCD SQSEASSPQE TVICGPVTRQ TNIQTLDRPI bmy_15316T0/1-332 ---------- ---------- ---------- ------AIIK TSMLFSDRWL BACU015989/1-293 ---------- ---------- ---------- ---------- ---------- 351 400 ENSBTAP00000025305/1-426 KKGPVQLIQQ SEMRRKSDLL RTLTSGSRES NMSSKKKAVK EKLSIEEELE ENSP00000426548/1-428 KKGPVQLIQQ SEMRRKSDLL RTLTSGSRES NMSSKKKAVK EKLSIEEELE ENSTTRP00000000719/1-427 KKGPVQLIQQ SEMRRKSDLL RTLTSGSRES NVSSKKKPVK EKLSIEEELE bmy_15316T0/1-332 NGCPDEL--- ---------- -----GSRYH ICVQR----- --------IE BACU015989/1-293 ---------- ---------- ---------- ---------- ---------- 401 450 ENSBTAP00000025305/1-426 KCIQDFLKIK IPDRFPERKH PWQSELLRKY HL ENSP00000426548/1-428 KCIQDFLKIK IPDRFPERKH PWQSELLRKY HL ENSTTRP00000000719/1-427 KCIQDFLKIK IPERFPERKH PWQSELLRKY HL bmy_15316T0/1-332 ILIHKVLMLM IF-------- ---------- -- BACU015989/1-293 -----FLFFH VYGSS----- ---------- --