KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:48 2014 Check: 00 .. Name: ENSP00000298596/1-989 Len: 1001 Check: 6415 Weight: 1.00 Name: ENSBTAP00000025324/1-984 Len: 1001 Check: 123 Weight: 1.00 Name: ENSTTRP00000011750/1-965 Len: 1001 Check: 9066 Weight: 1.00 Name: bmy_04413T0/1-729 Len: 1001 Check: 8850 Weight: 1.00 Name: BACU001949/1-865 Len: 1001 Check: 66 Weight: 1.00 // 1 50 ENSP00000298596/1-989 MARPVQLAPG SLALVLCRLE AQKAAGAAEE PGGRAVFRAF RRANARCFWN ENSBTAP00000025324/1-984 MAQPVQLAPG SLALVLCRLQ AQEEVEGAEE PGGRAVFRAF RRANARCFWN ENSTTRP00000011750/1-965 MARPVQLAPG SLALVLCRLE AQ-AAGGAEE PGGRAVFRAF CRANTRCFWN bmy_04413T0/1-729 ---------- ---------- ---------- ---------- ---------- BACU001949/1-865 MENSVR---- ---------- ---------- ---------- ---------- 51 100 ENSP00000298596/1-989 ARLARAASRL AFQGWLRRGV LLVRAPPACL QVLRDAWRRR ALRPPRGFRI ENSBTAP00000025324/1-984 SRLARAASRL AFQGWLRRGV LLVHAPPASL QVLRDAWCRR ALRPPRGFRI ENSTTRP00000011750/1-965 SRLARAASRL AFQGWLRRGV LLVHAPPASL Q--------- ---------- bmy_04413T0/1-729 ---------- ---------- ---------- ---------- ---------- BACU001949/1-865 ---------- ---------- VIAFQKPKCK S--------- ---------- 101 150 ENSP00000298596/1-989 RAVGDVFPVQ MNPITQSQFV PLGEVLCCAI SDMNTAQIVV TQESLLERLM ENSBTAP00000025324/1-984 LAVGDVFPVQ MNPIAQSQFI PLAEVLCCAI SDMNADQIVV TQESLLEHLM ENSTTRP00000011750/1-965 ----DVFPVQ MNPIAQSQFI PLAEVLCCAV SDMNAAQIVV TQESLLEHLV bmy_04413T0/1-729 ---------- ---------- ---------- ---------- ---------- BACU001949/1-865 ----DVFPVQ MNPIAQSQFI PLAEVLCCAV SDMNAAQIVV TQESLLEHLV 151 200 ENSP00000298596/1-989 KHYP------ -----GIAIP SEDILYTTLG TLIKERKIYH TGEGYFIVTP ENSBTAP00000025324/1-984 KRYP------ -----GIAIP SRDILYTTLG TLIKERKIYH TGEGYFIVTP ENSTTRP00000011750/1-965 KHYP------ -----GIAIP SQDILYTTLG TLIKERKIYH TGEGYFIVTP bmy_04413T0/1-729 ---------- ---------- ---------- ---------- ---------- BACU001949/1-865 KHYPERISVK CLFVLGIAIP SQDILYTTLG TLIKERKIYH TGEGYFIVTP 201 250 ENSP00000298596/1-989 QTYFITNTTT QENKRMLPSD ESRLMPASMT YLVSMESCAE SAQENAAPIS ENSBTAP00000025324/1-984 QTYFITNTTP QENKRVL-SD ENSQMPTSIT YLVNVESCAE LAKENAAFIS ENSTTRP00000011750/1-965 QTYFITNTNP QENKRVL-SD ESPRMPTSIT YLVNVESCAD LAKENAAPIS bmy_04413T0/1-729 ---------- ---------- ----MPTSIT YLVNVESCAD LAKENATPIS BACU001949/1-865 QTYFITNTTP QENKRIL-SD ESPWMPTSIT YLVNVESCAD LTKENATPIS 251 300 ENSP00000298596/1-989 HCQSCQCFRD MHTQDVQEAP VAAEVTRKSH RGLGESVSWV QNGAVSVSAE ENSBTAP00000025324/1-984 HCHSCGCFHD VCTQDVQEPP AAVEVTNKGQ KGLVESKSLV HNQAVSVSEE ENSTTRP00000011750/1-965 HCHSCQCFHD VCTQYIQEPP AAAEVTRKCQ KGLGESKPLV QNRTVSVSEE bmy_04413T0/1-729 HCHSCQCFHD VCTQDVQKPP AAAEVTRKCQ KGLGESKPLV QNPTVSVSEE BACU001949/1-865 HCHSCQCFHD VCTQDIQKPP AAGEVTRKCQ KGLGESKPLV QNRTVSVSEE 301 350 ENSP00000298596/1-989 HHICESTKPL PYTRDKEKGK KFGFSLLWRS LSRKEKPKTE HSSFSAQFPP ENSBTAP00000025324/1-984 NHVCESIKPL PHTKDREKVK KFGFNLFWRN ISRKEKSRIE HSSFSAQFPP ENSTTRP00000011750/1-965 NRVCDSAKPL PFTKDREKAK KFGFSLFWRS ISRKEKSRTE HSSFSAQFPP bmy_04413T0/1-729 SHVCDSAKPL PFTKDREKAK KFGFSLFWRS ISRKEKSRTE HSSFSAQFPP BACU001949/1-865 NHVCDSAKPL PFTKDREKAK KFGFSLFWRS ISRKEKSRTE HSSFSAQFPP 351 400 ENSP00000298596/1-989 EEWPVRDEDD LDNIPRDVEH EIIKRINPIL TVDNLIKHTV LMQKYEEQKK ENSBTAP00000025324/1-984 EEWPVRDEDN MDNIPRDIEH EIIKRINPIL TVDNLIKHAV LMQKYEEQKK ENSTTRP00000011750/1-965 EEWPVRDEDN LDNIPRDIEH EIIKRINPIL TVDNLIKHTV IMQKYEEQKK bmy_04413T0/1-729 EEWPVRDEDN LDNIPRDIEH EIIKRINPIL TVDNLIKHTV IMQKYEEQKK BACU001949/1-865 EEWPVRDEDN LDNIPRDIEH EIIKRINPIL TVDNLIKHTV IMQKYEEQKK 401 450 ENSP00000298596/1-989 YNSQGTSTDM LTIGHKYPSK EGVKKRQGLS AKPQGQGHSR RDRHKARNQG ENSBTAP00000025324/1-984 YNSQGTSTDM LTLRHKYFSK VGVKKRQGWS VKPRRQGHSH RDRHKARSQG ENSTTRP00000011750/1-965 YNSQGTSTYM LTLRHKYPSK VGVKKSQGRS VKPRRRGHSH RDRDKARSQG bmy_04413T0/1-729 CNSQGTSTYM LTLRHKYPSK VGVKKSQGRS VKPRRRGHSH RDRDKARSQG BACU001949/1-865 CNSQGTSTYM LTLRHKYPSK VGVKKSQGRS VKPRRRGHSH RDRDKARSQG 451 500 ENSP00000298596/1-989 SEFQPGSIRL EKHPKLPATQ PIPRIKSPNE MVGQKPLGEI TTVLGSHLIY ENSBTAP00000025324/1-984 SGPQPGNVRL EKHPKLPATQ PTSSIKSPNE AVLQKPLGEN PSALGPHLIY ENSTTRP00000011750/1-965 SGPQPGSIRL EKHPKLPATQ PTPGIESPNE VELQKPLGEN PSVLGSHLIY bmy_04413T0/1-729 SGPQPGSIRL EKHPKLPATQ PTPRIKSPNE VELQKPLGEN PSVLGSHLIY BACU001949/1-865 SGPQPGSIRL EKHPKLPATQ PTPGIKSPNE VELQKPLGEN PSVLGSHLIY 501 550 ENSP00000298596/1-989 KKRISNPFQG LSHRGSTISK GHKIQKTSDL KPSQTGPKEK PFQKPRSLDS ENSBTAP00000025324/1-984 KKRISNPFQD LAPRGSPITK GHKIQKTSDL EPNQTGPKGK PFERSRSLVS ENSTTRP00000011750/1-965 KKRISNPFQG FSHRRSPITK EHNIQKIGDL KPSQIGPKGK PFQRARSLDS bmy_04413T0/1-729 KKRISNPFQG FSHRRSPITK EHNIQKTSDL KTSQIGPKGK RFQRSRSLDS BACU001949/1-865 KKRISNPFQG FSHRRSPITK EHNVQKTSDL KTSQIGPKGK PFQRSGSLDS 551 600 ENSP00000298596/1-989 SRIFDGKAKE PYAEQPNDKM EAESIYINDP TVKPINDDFR GHLFSHPQQS ENSBTAP00000025324/1-984 SRIFESEAKE LCGKQCNDIL REESTYVNHS TVKSISDDFR DHLLNYSQCN ENSTTRP00000011750/1-965 SRIFESEAKQ SYSEQCNDKL RAESIYVNHS TVKPISDDFR DYLFNYSQCG bmy_04413T0/1-729 SRIFESEAKQ SYSEQCNDKL RAESIYVNHS TVKPISDDFR DYLFNYSQCG BACU001949/1-865 SRIFESEAKQ SYSEQCNDKL RAESIYVNHS TVKPIGDDFR DYLFNYSQCG 601 650 ENSP00000298596/1-989 MLQNDGKCCP FMESMLRYEV YGGENEVIPE VLRKSHSHFD KLGETKQTPH ENSBTAP00000025324/1-984 VLQNGSKCCS FRESILRCDV YGGENEAIPE VSRRSYSHLD TLEETEEAQH ENSTTRP00000011750/1-965 VLQNDSKCCS FRESTLRRDV YGGENEAIPE VSRKSYSHFD TLEETKETQH bmy_04413T0/1-729 VLQNDSKCCS FRESTLRCDV YGGENEAIPE ISRKSYSHFD TLEETKETQH BACU001949/1-865 VLQNDSKCCS FRESTLRCDV YGGENEAIPE VSRKSYSHFD TLEETKETQH 651 700 ENSP00000298596/1-989 SLPSRGASFS DRTPSACRLV DNTIHQFQNL GLLDYPVGVN PLRQAARQDK ENSBTAP00000025324/1-984 VLPS-GGSSL NQASPACRLV DSTVHQFQNL GLLDYPLGAK HLRQIERQDR ENSTTRP00000011750/1-965 VLPSQGSSSL DQASSARRSV DETIHQFQNL GLLDYPVGAN HLRQPERQDR bmy_04413T0/1-729 VLPSRGSSSL DQASSACRLV DETIHQFQNL GLLDCPVGAD HLRQPERQDR BACU001949/1-865 VLPSRGSSSL DQASSACRLV DETIHQFQNL GLLDYPVGAN HLRQPERQDR 701 750 ENSP00000298596/1-989 DSEE-LLRKG FVQDAETTSL ENEQLSNDDQ ALYQNEVEDD DGACSSLYLE ENSBTAP00000025324/1-984 DSKETLMGKA HVQEAQTVCL ENEGLSDDDQ ALYQNEVEDE DGACSSLYLD ENSTTRP00000011750/1-965 DSEETLMRKA FIQEAETVSL ENEGLSDDDQ ALYQNEADDE DGACSSLYLD bmy_04413T0/1-729 DSEETLMRKA FIQEAETVSL ENEGLSDDDQ ALYQNEADEE DGACSSLYLD BACU001949/1-865 DSEETLMRKA FIQEAETVSL ENEGLSDDDQ ALYQNEADDE DGACSSLYLD 751 800 ENSP00000298596/1-989 EDDISENDDL RQMLPGHSQY SFTGGSQGNH LGKQKVIERS LTEYNSTMER ENSBTAP00000025324/1-984 EDDFSENDDL IQMLPDNIQF SFPEGNKWNH LGKQTVTERS LTEYDSNIQR ENSTTRP00000011750/1-965 EDDFSENDDL IQMLPGHIQV SFPGGNKWNH LGKRKVTERS LTEYNSNIQR bmy_04413T0/1-729 EDDFSENGDL IQMLPGHIQF SFPGGNKWNH LGKQKVTERS LTEYNSNIQR BACU001949/1-865 EDDFSENDDL IQMLPGHIQF SFPGGNKWNH LGKQKVTERS LTEYNSNIQR 801 850 ENSP00000298596/1-989 VESQVLKRNE CYKPTGLHAT PGESQEPNLS AESCGLNSGA QFGFNYEEEP ENSBTAP00000025324/1-984 FEPQVLKGNE HYK----LTN PGESQKPNLS AENCILNLGI QCGFNYEEEP ENSTTRP00000011750/1-965 FEPLVLKGNE HYKPTGLLTN PGESQKPNLS AENCVLNLGI QSGFDYEKEP bmy_04413T0/1-729 FEPLVLKGNE HYKPTGLLTN PGEGQEPNLS AENCVLNLGI QSGFDYEKEP BACU001949/1-865 FEPLVLKGNE HYKPTGLLTN PGEGQEPNLS AENCVLNLGI QSGFDYEKEP 851 900 ENSP00000298596/1-989 SVAKCVQASA PADERIFDYY SARKASFEAE VIQDTIGDTG KKPASWSQSP ENSBTAP00000025324/1-984 SVTECVQASA ADDGSIFDYY STGKATAEAE ALQGSVGDTG KKPGSWSQSA ENSTTRP00000011750/1-965 SIAKCVQASA PADGSIFDYY GTRKSASEAE TLQDPVGDTG KKPATWSQSA bmy_04413T0/1-729 SVAKCVQASA PADGSIFDYY STRKAASEAE TLQDPVGDTG KKPATWSQSA BACU001949/1-865 SVAKCVQASA PADGSIFDYY STRKAASEAE TLQDPVGDTG KKPATWSQSA 901 950 ENSP00000298596/1-989 QNQEMRKHFP QKFQLFNTSH MPVLAQDVQY EHSHLEGTEN HSMAGDSGID ENSBTAP00000025324/1-984 QSQEMRKQFT HKLELFSTSH MSALAQDVQP ERSHLEGAEN QSLTGDSGID ENSTTRP00000011750/1-965 QNQEMRKQFT HKLELFNTSH MPVLAQDVQP EHSHLEGTEN QSMAGDSGID bmy_04413T0/1-729 QNQEMRKQFT HKLELFNTLH MPVLAQDVQP EHSHLEGTEN QSMAGDSGID BACU001949/1-865 QNQEMRKQFT HKLELFNTLH MPALAQDVQP EHSHLEGTEN QSMAGDSGID 951 1000 ENSP00000298596/1-989 SPRTQSLGSN NSVILDGLKR RQNFLQNVEG TKSSQPLTSN SLLPLTPVIN ENSBTAP00000025324/1-984 SPRTQSLASN NSVILDGLKR RQNLLQNFEG TKSSQTLTSS SLLQLTPVIN ENSTTRP00000011750/1-965 SPRTQSLASN NSVILDGLKR RQNFLQNFGG TKSSQTPTSN SLLQLTPVIN bmy_04413T0/1-729 SPR------- ---------- ---------- ---------- ---------- BACU001949/1-865 SPR------- ---------- ---------- ---------- ---------- 1001 1050 ENSP00000298596/1-989 V ENSBTAP00000025324/1-984 V ENSTTRP00000011750/1-965 V bmy_04413T0/1-729 - BACU001949/1-865 -