KEY:
ENSP* - Homo sapiens (Human)
ENSBTA* - Bos taurus (Cow)
ENSTTR* - Tursiops truncatus (Dolphin)
bmy_* - Balaena mysticetus (Bowhead whale)
BACU* - Balaenoptera acutorostrata (Minke whale)
Copy from below the line for a valid .msf file.
----------------------------------------------------------------------------------
NoName MSF: 5 Type: P Thu May 15 17:25:48 2014 Check: 00 ..
Name: ENSP00000298596/1-989 Len: 1001 Check: 6415 Weight: 1.00
Name: ENSBTAP00000025324/1-984 Len: 1001 Check: 123 Weight: 1.00
Name: ENSTTRP00000011750/1-965 Len: 1001 Check: 9066 Weight: 1.00
Name: bmy_04413T0/1-729 Len: 1001 Check: 8850 Weight: 1.00
Name: BACU001949/1-865 Len: 1001 Check: 66 Weight: 1.00
//
1 50
ENSP00000298596/1-989 MARPVQLAPG SLALVLCRLE AQKAAGAAEE PGGRAVFRAF RRANARCFWN
ENSBTAP00000025324/1-984 MAQPVQLAPG SLALVLCRLQ AQEEVEGAEE PGGRAVFRAF RRANARCFWN
ENSTTRP00000011750/1-965 MARPVQLAPG SLALVLCRLE AQ-AAGGAEE PGGRAVFRAF CRANTRCFWN
bmy_04413T0/1-729 ---------- ---------- ---------- ---------- ----------
BACU001949/1-865 MENSVR---- ---------- ---------- ---------- ----------
51 100
ENSP00000298596/1-989 ARLARAASRL AFQGWLRRGV LLVRAPPACL QVLRDAWRRR ALRPPRGFRI
ENSBTAP00000025324/1-984 SRLARAASRL AFQGWLRRGV LLVHAPPASL QVLRDAWCRR ALRPPRGFRI
ENSTTRP00000011750/1-965 SRLARAASRL AFQGWLRRGV LLVHAPPASL Q--------- ----------
bmy_04413T0/1-729 ---------- ---------- ---------- ---------- ----------
BACU001949/1-865 ---------- ---------- VIAFQKPKCK S--------- ----------
101 150
ENSP00000298596/1-989 RAVGDVFPVQ MNPITQSQFV PLGEVLCCAI SDMNTAQIVV TQESLLERLM
ENSBTAP00000025324/1-984 LAVGDVFPVQ MNPIAQSQFI PLAEVLCCAI SDMNADQIVV TQESLLEHLM
ENSTTRP00000011750/1-965 ----DVFPVQ MNPIAQSQFI PLAEVLCCAV SDMNAAQIVV TQESLLEHLV
bmy_04413T0/1-729 ---------- ---------- ---------- ---------- ----------
BACU001949/1-865 ----DVFPVQ MNPIAQSQFI PLAEVLCCAV SDMNAAQIVV TQESLLEHLV
151 200
ENSP00000298596/1-989 KHYP------ -----GIAIP SEDILYTTLG TLIKERKIYH TGEGYFIVTP
ENSBTAP00000025324/1-984 KRYP------ -----GIAIP SRDILYTTLG TLIKERKIYH TGEGYFIVTP
ENSTTRP00000011750/1-965 KHYP------ -----GIAIP SQDILYTTLG TLIKERKIYH TGEGYFIVTP
bmy_04413T0/1-729 ---------- ---------- ---------- ---------- ----------
BACU001949/1-865 KHYPERISVK CLFVLGIAIP SQDILYTTLG TLIKERKIYH TGEGYFIVTP
201 250
ENSP00000298596/1-989 QTYFITNTTT QENKRMLPSD ESRLMPASMT YLVSMESCAE SAQENAAPIS
ENSBTAP00000025324/1-984 QTYFITNTTP QENKRVL-SD ENSQMPTSIT YLVNVESCAE LAKENAAFIS
ENSTTRP00000011750/1-965 QTYFITNTNP QENKRVL-SD ESPRMPTSIT YLVNVESCAD LAKENAAPIS
bmy_04413T0/1-729 ---------- ---------- ----MPTSIT YLVNVESCAD LAKENATPIS
BACU001949/1-865 QTYFITNTTP QENKRIL-SD ESPWMPTSIT YLVNVESCAD LTKENATPIS
251 300
ENSP00000298596/1-989 HCQSCQCFRD MHTQDVQEAP VAAEVTRKSH RGLGESVSWV QNGAVSVSAE
ENSBTAP00000025324/1-984 HCHSCGCFHD VCTQDVQEPP AAVEVTNKGQ KGLVESKSLV HNQAVSVSEE
ENSTTRP00000011750/1-965 HCHSCQCFHD VCTQYIQEPP AAAEVTRKCQ KGLGESKPLV QNRTVSVSEE
bmy_04413T0/1-729 HCHSCQCFHD VCTQDVQKPP AAAEVTRKCQ KGLGESKPLV QNPTVSVSEE
BACU001949/1-865 HCHSCQCFHD VCTQDIQKPP AAGEVTRKCQ KGLGESKPLV QNRTVSVSEE
301 350
ENSP00000298596/1-989 HHICESTKPL PYTRDKEKGK KFGFSLLWRS LSRKEKPKTE HSSFSAQFPP
ENSBTAP00000025324/1-984 NHVCESIKPL PHTKDREKVK KFGFNLFWRN ISRKEKSRIE HSSFSAQFPP
ENSTTRP00000011750/1-965 NRVCDSAKPL PFTKDREKAK KFGFSLFWRS ISRKEKSRTE HSSFSAQFPP
bmy_04413T0/1-729 SHVCDSAKPL PFTKDREKAK KFGFSLFWRS ISRKEKSRTE HSSFSAQFPP
BACU001949/1-865 NHVCDSAKPL PFTKDREKAK KFGFSLFWRS ISRKEKSRTE HSSFSAQFPP
351 400
ENSP00000298596/1-989 EEWPVRDEDD LDNIPRDVEH EIIKRINPIL TVDNLIKHTV LMQKYEEQKK
ENSBTAP00000025324/1-984 EEWPVRDEDN MDNIPRDIEH EIIKRINPIL TVDNLIKHAV LMQKYEEQKK
ENSTTRP00000011750/1-965 EEWPVRDEDN LDNIPRDIEH EIIKRINPIL TVDNLIKHTV IMQKYEEQKK
bmy_04413T0/1-729 EEWPVRDEDN LDNIPRDIEH EIIKRINPIL TVDNLIKHTV IMQKYEEQKK
BACU001949/1-865 EEWPVRDEDN LDNIPRDIEH EIIKRINPIL TVDNLIKHTV IMQKYEEQKK
401 450
ENSP00000298596/1-989 YNSQGTSTDM LTIGHKYPSK EGVKKRQGLS AKPQGQGHSR RDRHKARNQG
ENSBTAP00000025324/1-984 YNSQGTSTDM LTLRHKYFSK VGVKKRQGWS VKPRRQGHSH RDRHKARSQG
ENSTTRP00000011750/1-965 YNSQGTSTYM LTLRHKYPSK VGVKKSQGRS VKPRRRGHSH RDRDKARSQG
bmy_04413T0/1-729 CNSQGTSTYM LTLRHKYPSK VGVKKSQGRS VKPRRRGHSH RDRDKARSQG
BACU001949/1-865 CNSQGTSTYM LTLRHKYPSK VGVKKSQGRS VKPRRRGHSH RDRDKARSQG
451 500
ENSP00000298596/1-989 SEFQPGSIRL EKHPKLPATQ PIPRIKSPNE MVGQKPLGEI TTVLGSHLIY
ENSBTAP00000025324/1-984 SGPQPGNVRL EKHPKLPATQ PTSSIKSPNE AVLQKPLGEN PSALGPHLIY
ENSTTRP00000011750/1-965 SGPQPGSIRL EKHPKLPATQ PTPGIESPNE VELQKPLGEN PSVLGSHLIY
bmy_04413T0/1-729 SGPQPGSIRL EKHPKLPATQ PTPRIKSPNE VELQKPLGEN PSVLGSHLIY
BACU001949/1-865 SGPQPGSIRL EKHPKLPATQ PTPGIKSPNE VELQKPLGEN PSVLGSHLIY
501 550
ENSP00000298596/1-989 KKRISNPFQG LSHRGSTISK GHKIQKTSDL KPSQTGPKEK PFQKPRSLDS
ENSBTAP00000025324/1-984 KKRISNPFQD LAPRGSPITK GHKIQKTSDL EPNQTGPKGK PFERSRSLVS
ENSTTRP00000011750/1-965 KKRISNPFQG FSHRRSPITK EHNIQKIGDL KPSQIGPKGK PFQRARSLDS
bmy_04413T0/1-729 KKRISNPFQG FSHRRSPITK EHNIQKTSDL KTSQIGPKGK RFQRSRSLDS
BACU001949/1-865 KKRISNPFQG FSHRRSPITK EHNVQKTSDL KTSQIGPKGK PFQRSGSLDS
551 600
ENSP00000298596/1-989 SRIFDGKAKE PYAEQPNDKM EAESIYINDP TVKPINDDFR GHLFSHPQQS
ENSBTAP00000025324/1-984 SRIFESEAKE LCGKQCNDIL REESTYVNHS TVKSISDDFR DHLLNYSQCN
ENSTTRP00000011750/1-965 SRIFESEAKQ SYSEQCNDKL RAESIYVNHS TVKPISDDFR DYLFNYSQCG
bmy_04413T0/1-729 SRIFESEAKQ SYSEQCNDKL RAESIYVNHS TVKPISDDFR DYLFNYSQCG
BACU001949/1-865 SRIFESEAKQ SYSEQCNDKL RAESIYVNHS TVKPIGDDFR DYLFNYSQCG
601 650
ENSP00000298596/1-989 MLQNDGKCCP FMESMLRYEV YGGENEVIPE VLRKSHSHFD KLGETKQTPH
ENSBTAP00000025324/1-984 VLQNGSKCCS FRESILRCDV YGGENEAIPE VSRRSYSHLD TLEETEEAQH
ENSTTRP00000011750/1-965 VLQNDSKCCS FRESTLRRDV YGGENEAIPE VSRKSYSHFD TLEETKETQH
bmy_04413T0/1-729 VLQNDSKCCS FRESTLRCDV YGGENEAIPE ISRKSYSHFD TLEETKETQH
BACU001949/1-865 VLQNDSKCCS FRESTLRCDV YGGENEAIPE VSRKSYSHFD TLEETKETQH
651 700
ENSP00000298596/1-989 SLPSRGASFS DRTPSACRLV DNTIHQFQNL GLLDYPVGVN PLRQAARQDK
ENSBTAP00000025324/1-984 VLPS-GGSSL NQASPACRLV DSTVHQFQNL GLLDYPLGAK HLRQIERQDR
ENSTTRP00000011750/1-965 VLPSQGSSSL DQASSARRSV DETIHQFQNL GLLDYPVGAN HLRQPERQDR
bmy_04413T0/1-729 VLPSRGSSSL DQASSACRLV DETIHQFQNL GLLDCPVGAD HLRQPERQDR
BACU001949/1-865 VLPSRGSSSL DQASSACRLV DETIHQFQNL GLLDYPVGAN HLRQPERQDR
701 750
ENSP00000298596/1-989 DSEE-LLRKG FVQDAETTSL ENEQLSNDDQ ALYQNEVEDD DGACSSLYLE
ENSBTAP00000025324/1-984 DSKETLMGKA HVQEAQTVCL ENEGLSDDDQ ALYQNEVEDE DGACSSLYLD
ENSTTRP00000011750/1-965 DSEETLMRKA FIQEAETVSL ENEGLSDDDQ ALYQNEADDE DGACSSLYLD
bmy_04413T0/1-729 DSEETLMRKA FIQEAETVSL ENEGLSDDDQ ALYQNEADEE DGACSSLYLD
BACU001949/1-865 DSEETLMRKA FIQEAETVSL ENEGLSDDDQ ALYQNEADDE DGACSSLYLD
751 800
ENSP00000298596/1-989 EDDISENDDL RQMLPGHSQY SFTGGSQGNH LGKQKVIERS LTEYNSTMER
ENSBTAP00000025324/1-984 EDDFSENDDL IQMLPDNIQF SFPEGNKWNH LGKQTVTERS LTEYDSNIQR
ENSTTRP00000011750/1-965 EDDFSENDDL IQMLPGHIQV SFPGGNKWNH LGKRKVTERS LTEYNSNIQR
bmy_04413T0/1-729 EDDFSENGDL IQMLPGHIQF SFPGGNKWNH LGKQKVTERS LTEYNSNIQR
BACU001949/1-865 EDDFSENDDL IQMLPGHIQF SFPGGNKWNH LGKQKVTERS LTEYNSNIQR
801 850
ENSP00000298596/1-989 VESQVLKRNE CYKPTGLHAT PGESQEPNLS AESCGLNSGA QFGFNYEEEP
ENSBTAP00000025324/1-984 FEPQVLKGNE HYK----LTN PGESQKPNLS AENCILNLGI QCGFNYEEEP
ENSTTRP00000011750/1-965 FEPLVLKGNE HYKPTGLLTN PGESQKPNLS AENCVLNLGI QSGFDYEKEP
bmy_04413T0/1-729 FEPLVLKGNE HYKPTGLLTN PGEGQEPNLS AENCVLNLGI QSGFDYEKEP
BACU001949/1-865 FEPLVLKGNE HYKPTGLLTN PGEGQEPNLS AENCVLNLGI QSGFDYEKEP
851 900
ENSP00000298596/1-989 SVAKCVQASA PADERIFDYY SARKASFEAE VIQDTIGDTG KKPASWSQSP
ENSBTAP00000025324/1-984 SVTECVQASA ADDGSIFDYY STGKATAEAE ALQGSVGDTG KKPGSWSQSA
ENSTTRP00000011750/1-965 SIAKCVQASA PADGSIFDYY GTRKSASEAE TLQDPVGDTG KKPATWSQSA
bmy_04413T0/1-729 SVAKCVQASA PADGSIFDYY STRKAASEAE TLQDPVGDTG KKPATWSQSA
BACU001949/1-865 SVAKCVQASA PADGSIFDYY STRKAASEAE TLQDPVGDTG KKPATWSQSA
901 950
ENSP00000298596/1-989 QNQEMRKHFP QKFQLFNTSH MPVLAQDVQY EHSHLEGTEN HSMAGDSGID
ENSBTAP00000025324/1-984 QSQEMRKQFT HKLELFSTSH MSALAQDVQP ERSHLEGAEN QSLTGDSGID
ENSTTRP00000011750/1-965 QNQEMRKQFT HKLELFNTSH MPVLAQDVQP EHSHLEGTEN QSMAGDSGID
bmy_04413T0/1-729 QNQEMRKQFT HKLELFNTLH MPVLAQDVQP EHSHLEGTEN QSMAGDSGID
BACU001949/1-865 QNQEMRKQFT HKLELFNTLH MPALAQDVQP EHSHLEGTEN QSMAGDSGID
951 1000
ENSP00000298596/1-989 SPRTQSLGSN NSVILDGLKR RQNFLQNVEG TKSSQPLTSN SLLPLTPVIN
ENSBTAP00000025324/1-984 SPRTQSLASN NSVILDGLKR RQNLLQNFEG TKSSQTLTSS SLLQLTPVIN
ENSTTRP00000011750/1-965 SPRTQSLASN NSVILDGLKR RQNFLQNFGG TKSSQTPTSN SLLQLTPVIN
bmy_04413T0/1-729 SPR------- ---------- ---------- ---------- ----------
BACU001949/1-865 SPR------- ---------- ---------- ---------- ----------
1001 1050
ENSP00000298596/1-989 V
ENSBTAP00000025324/1-984 V
ENSTTRP00000011750/1-965 V
bmy_04413T0/1-729 -
BACU001949/1-865 -