KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:50 2014 Check: 00 .. Name: ENSTTRP00000011294/1-1072 Len: 1089 Check: 749 Weight: 1.00 Name: ENSP00000382492/1-1075 Len: 1089 Check: 2808 Weight: 1.00 Name: ENSBTAP00000025331/1-1071 Len: 1089 Check: 4254 Weight: 1.00 Name: bmy_12843T0/1-577 Len: 1089 Check: 7747 Weight: 1.00 Name: BACU012146/1-738 Len: 1089 Check: 9518 Weight: 1.00 // 1 50 ENSTTRP00000011294/1-1072 MFYGTHFIMS PPAKSKLKRQ GQLLSSVLSR TLSYKYRDLD TTCSSLGSSD ENSP00000382492/1-1075 MFYGTHFIMS PPTKSKLKRQ SQLLSSMLSR TLSYKYRDLD STFSSLGASD ENSBTAP00000025331/1-1071 MFYGTHFIMS PPAKSKLKRQ GQLLSSVLSR TLSYKYRDLD TPYSGLGASD bmy_12843T0/1-577 ---------- ---------- ---------- ---------- ---------- BACU012146/1-738 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000011294/1-1072 DPAELSTQLS APGVLKVFGD SVCTGTHYKS VLATGTSSAR ELVREALERY ENSP00000382492/1-1075 DPAELSTQLS APGVLKVFGD SVCTGTHYKS VLATGTSSAR ELVKEALERY ENSBTAP00000025331/1-1071 DPAELSTQLS APGVLKVFGD SVCSGTHYKS VLATGTSSAR ELVREALERY bmy_12843T0/1-577 ---------- ---------- ---------- ---------- ---------- BACU012146/1-738 ---------- ---------- ---------- ---------- ---------- 101 150 ENSTTRP00000011294/1-1072 ALSPERAGQY VLCDVVGQAG DSGRQWQAEG FRVFGDNEKP LLIQELWKPR ENSP00000382492/1-1075 ALDPRQAGQY VLCDVVGQAG DAGQRWQARC FRVFGDSEKP LLIQELWKPR ENSBTAP00000025331/1-1071 ALSPERAAQF VLCDVVGQAS GGGHAWQAQG FRVFGDNEKP LLIQELWKPR bmy_12843T0/1-577 ---------- ---------- ---------- ---------- ---------- BACU012146/1-738 ---------- ---------- ---------- ---------- ---------- 151 200 ENSTTRP00000011294/1-1072 EGLSRRFELR KRSEMEELAA RDVDTVTAXX XXXXXXXXXX XXXXXXXXXX ENSP00000382492/1-1075 EGLSRRFELR KRSDVEELAA KEVDTITAGI NAQARRLQRS RAKGTPTPAL ENSBTAP00000025331/1-1071 EGLSRRFELR KRSEVEELAA KDVDTMTAVM NSEKRRLQKS SKSRTPVPAL bmy_12843T0/1-577 ---------- ---------- ---------- ---------- ---------- BACU012146/1-738 ---------- ---------- ---------- ---------- ---------- 201 250 ENSTTRP00000011294/1-1072 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000382492/1-1075 GDARSSPPPR LRRTVSETSL SPVNALPAAA QGPEEPGPDA MRYSLYQSPH ENSBTAP00000025331/1-1071 GGGGCPPPGR VRRQVS---- ----AWNKAS RGPEEPGRDT MRCSLYESPH bmy_12843T0/1-577 ---------- ---------- ---------- ---------- ---------- BACU012146/1-738 ---------- ---------- ---------- ---------- MCCSVYKSPH 251 300 ENSTTRP00000011294/1-1072 XXXXXXXXXX XDSLVYVLNR ERHTVGQRTP SSKPSISLSA PDILPLHCTI ENSP00000382492/1-1075 LLLLQGYSQQ HDSLVYVLNR DRHTVGQRTP SSKPSISLSA PDILPLHCTI ENSBTAP00000025331/1-1071 LLLLQGYSQQ HDSLVYVLNR ERHTVGQRTP SSKPSISLSA PDILPLHCTL bmy_12843T0/1-577 ---------- ---------- ---------- ---------- ---------- BACU012146/1-738 LLLLQGYSQQ HDSLVYVLNR ERHTVGQRTP SSKPSISLSA PDILPLHCTI 301 350 ENSTTRP00000011294/1-1072 RRRRPLGRAQ AGAQLVLEPI PGASVSVNFS EVGGRAVALR HGDLLSLGLY ENSP00000382492/1-1075 RRQPLPDSGQ AAGRLVLEPI PGAHISVNFS EVGHRTVVLH HGDLLSLGLY ENSBTAP00000025331/1-1071 RRRQPSGQGP AGAQLVLEPL PGAPVAVNFA EVGARPVVLR YGDLLSLGLY bmy_12843T0/1-577 ---------- ---------- ---------- ---------- ---------- BACU012146/1-738 RRRQPSGRAQ AGAQLVLEPI PGAPVSVNFS EVGGRAVVLR HGDLLSLGLY 351 400 ENSTTRP00000011294/1-1072 YLLLLKDPAQ AQPLPAQALA RLRAVPESCR MCGAPLRARG ASVSARPGPP ENSP00000382492/1-1075 YLLLFKDPAQ AQPLPARALA RLRAVPQSCR LCGAALGARG AASPTQAALP ENSBTAP00000025331/1-1071 YLLLFKDPAQ AQPLPAQALA RLRTAPQSCR LCGALLRARG APAPARPALP bmy_12843T0/1-577 ---------- ---------- ---------- ---------- ---------- BACU012146/1-738 YLLLLKDPAQ AQPLPAQALA RLRAVPESCR ---------- ---------- 401 450 ENSTTRP00000011294/1-1072 RARPLHLEFE PDMEDALLQR IMTLVEPGGN DHKLTPAFLL CLCIQHSATR ENSP00000382492/1-1075 RRQQLLLEFE PHLEDTLLQR IMTLIEPGGD DHKLTPAFLL CLCIQHSATH ENSBTAP00000025331/1-1071 RPRPLQLEFE PDVEDTLLQR IMTLIEPDGD DHKLTPAFLL CLCIQHSATR bmy_12843T0/1-577 ---------- ---------- ---------- ---------- ---------- BACU012146/1-738 ---------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000011294/1-1072 LEPGSFGQLL LKMAKMIRET VWEKTKELAE KQAHLQEPLS TASFTMAGLV ENSP00000382492/1-1075 FQPGTFGQLL LKIARLIRET VWEKTKELAE KQAQLQEPIS LASCAMADLV ENSBTAP00000025331/1-1071 LEPGSFGQLL LKIARLIRET VWEKTKELAE KQAHLPEPPS AASFSLAGLA bmy_12843T0/1-577 ---------- ---------- ---------- ---------- -----MAGLV BACU012146/1-738 ---------- ---------- ---------- ----IQEPLS TASFTMAGLV 501 550 ENSTTRP00000011294/1-1072 PDLQHILFWM SNSVELLYFI QQKCPLYMQS LEEDLDVTGS KESLFSCTLT ENSP00000382492/1-1075 PDLQPILFWM SNSIELLYFI QQKCPLYMQS MEEQLDITGS KESLFSCTLT ENSBTAP00000025331/1-1071 PDLQHILFWM SNSVELLYFV QQRCPLYMQS LEEELDVTGS KESLFSCALT bmy_12843T0/1-577 PDLQHILFWM SNSVELLYFM QQKCPLYMQS LEEELDVTGS KESLFSCTLT BACU012146/1-738 PDLQHILFWM SNSVELLYFI QQKCPLYMQS LEEELDATGS KESLFSCTLT 551 600 ENSTTRP00000011294/1-1072 ASEEAMAVLE EVILYAFQQC VYYVSKSLYV CLPALLECPP FQLECRESWC ENSP00000382492/1-1075 ASEEAMAVLE EVVLYAFQQC VYYVSKSLYI CLPALLECPP FQTERRESWS ENSBTAP00000025331/1-1071 ASEEAMAVLE EVVLYAFQQC VYYVSKALYV CLPALLECPP FQSERRESWS bmy_12843T0/1-577 ASEEAMAVLE EVVLYAFQQC VYYVSKSLYV CLPALLECPP FQLECRESWC BACU012146/1-738 ASEEAMAVLE EVVLYAFQQC VYYVSKSLYV CLPALLECPP FQLECRESWC 601 650 ENSTTRP00000011294/1-1072 SAPQLPEELH RVVSIYQATL DLLRPLQVHP EIAAQVLAYL FFFSGTLLFN ENSP00000382492/1-1075 SAPELPEELR RVVSVYQAAL DLLRQLQVHP EVASQMLAYL FFFSGTLLLN ENSBTAP00000025331/1-1071 AGPPLPEELR RVVAVYQAAL DLLRRLHVHP EVAAQVLAYL FFFSGTLLLN bmy_12843T0/1-577 SAPRLPEELH RVVSVYQATL DLLRPLQVHP DIAAQVLAYL FFFSGTLLFN BACU012146/1-738 SAPRLPEELH RVVSIYQATL DLLQPLQVHP EIAAQVLAYL FFFSGTLLFN 651 700 ENSTTRP00000011294/1-1072 QLLDKXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000382492/1-1075 QLLDRGPSLS CFHWPRGVQA CARLQQLLEW MRSAGFGAAG EHFFQKLSCT ENSBTAP00000025331/1-1071 QLLDKGPSLS CFHWPRGVQA CARLQQLLEW IRSAGFGEAG ERFFRKLSCT bmy_12843T0/1-577 QLLDKGPSLS CFHWPRGVQA CARLQQLLEW TRSAGFGEAG ERFFRKLSCT BACU012146/1-738 QLLDRGPSLS CFHWPRGVQA CARLQQLLEW TRSAGFGEAG ERFFRKLSCT 701 750 ENSTTRP00000011294/1-1072 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000382492/1-1075 LNLLATPRAQ LIQMSWTALR AAFPALSPAQ LHRLLTHYQL ASAMGPMSTW ENSBTAP00000025331/1-1071 LNLLATPSAQ LIQMSWASLR AAFPALSPAQ LHRLLTQYQL ASAMGPMSAW bmy_12843T0/1-577 LNLLATPSAQ LVQMSWANLR AAFPALSPAQ LHRLLTQYQL ASAMGPMSAW BACU012146/1-738 LNLLATPSAQ LVQMSWANLR AAFPALSPAQ LHRLLTQYQL ASAIGPMSAW 751 800 ENSTTRP00000011294/1-1072 XXXXXXXXXX XXXX------ -DVLESYENP PPIVLP---S EGFQVDLEAD ENSP00000382492/1-1075 EPGAQDSPEA FRSE------ -DVLESYENP PPIVLP---S DGFQVDLEAN ENSBTAP00000025331/1-1071 EPGAQDGPAA FKSE------ -EVLESYENP PPIVLP---S EGFQVDLDTE bmy_12843T0/1-577 EPGAQDSPAA FKSE------ -EVLESYENP PPIVLP---S EGFQVDLEAD BACU012146/1-738 EPGAQDSPAA FKSGPSTEGG VSVLDAGSEV GAAVFPPCGS EGFQVDLEAD 801 850 ENSTTRP00000011294/1-1072 CLDDSLHQHL LYIRHFLWSL RSQPSPGGRP ARPE------ -CLQGPQHTS ENSP00000382492/1-1075 CLDDSIYQHL LYVRHFLWGL RSRASP-GSP GRPGSGASQP VCPEGMHHVV ENSBTAP00000025331/1-1071 CPDDRVYQHL LYIRHFLCGL RSQPGPSGAP TRPDSGLNSL LSPQGLHHAS bmy_12843T0/1-577 CLDDSLHQHL LYIRHFLWSL RSKPSPGGRP AWPE------ -CLQGPHHTS BACU012146/1-738 CLDDSLHQHL LYIRHFLWSL RTKPSPGGRP ARPE------ -CLQGPHHTS 851 900 ENSTTRP00000011294/1-1072 PEGHPEDQSR PLASRDPGRG AREAGLERTP PSAGDPQAQG PLGRPPGRVS ENSP00000382492/1-1075 LDGHLEAPSC PLAPRDPGPA AREVAPERTL PLRGAPWAQA PPGRQP---S ENSBTAP00000025331/1-1071 PEGHPEAQSC PLASRDPTGG AQETGLEHPL SSVGGPWAQG VPGRPPGCPS bmy_12843T0/1-577 PEGHPEDQSR PLASRDPGRG AHEADPERLP PSAGDPQAQG PLGRPPGRVS BACU012146/1-738 PEGHPEDQSC TLASRDPGRG AHEAGPERPP PSAGDPQAQG PLGRPPGRVS 901 950 ENSTTRP00000011294/1-1072 RGGAQAGDPH GDPSCLLTPP GTPLSLEPAV PDWPEASSAC GEVLLEGRRN ENSP00000382492/1-1075 RGGSQAGPPH TDSSCLLTPP STPLGPEPGD PDWPESGGPC GKALPERQRN ENSBTAP00000025331/1-1071 HGGLQAVDPH GDPSCLLTPP GTPLGLDPAS PDWPEGSSAC RRALPEGRRT bmy_12843T0/1-577 RGGPQAGDPH GDPSCLLTPP GTPLSLEPAV PDWPEASSAC GEALPEGRRN BACU012146/1-738 RGGPQAGDPH GDPSCLLTPP GTPLNLEPAV PDWPEGSSAC GEALPEGRRN 951 1000 ENSTTRP00000011294/1-1072 GPSGPGCAAP QGDCAAPAAE PPPAPSSHSS STDDFCYMFV VELERGPSGL ENSP00000382492/1-1075 GLSGLRGAAP EGDSAALAEE SPPAPSSRSS STEDFCYVFT VELERGPSGL ENSBTAP00000025331/1-1071 GPGGPRGASR EGDCAAPEDE PPPAPSSHSS STDDFCYMFV VELERGPSGL bmy_12843T0/1-577 GPSGPRCAAP EGDCAAPAAE PPPAPSSHSS STDDFRYMFA VELERGPSGL BACU012146/1-738 GPGGPRCAAP EGDCAAPAAE PPLAPSSHSS STDDFCYMFA VELERGPSGL 1001 1050 ENSTTRP00000011294/1-1072 GMGLVDGMHT PLGAPGLYIQ TLLPGSPAAS DGRLSLGDRI LEVNGSSLVG ENSP00000382492/1-1075 GMGLIDGMHT HLGAPGLYIQ TLLPGSPAAA DGRLSLGDRI LEVNGSSLLG ENSBTAP00000025331/1-1071 GMGLIDGMHT PLGAPGLYIQ TLLPGSPAAA DGRLALGDRI LEVNGSSLAG bmy_12843T0/1-577 GMGLIDGMHT PLGAPGLYIQ TLLPGSPAAS DGRLSLGDRI LEVNGSSLVG BACU012146/1-738 GMGLIDGMHT PLGAPGLYIQ TLLPGSPAAS DGRLSLGDRI LEVNGSSLVG 1051 1100 ENSTTRP00000011294/1-1072 VSYLRAVDLI RHGGKKVRFL VAKSDVETAK KIRFRTPPP ENSP00000382492/1-1075 LGYLRAVDLI RHGGKKMRFL VAKSDVETAK KIHFRTPPL ENSBTAP00000025331/1-1071 VSYPRAVDLI RHGGKKMRFL VAKSDVETAR KVRFRTPPP bmy_12843T0/1-577 INYLRAVDLI RHGGKKVRFL VAKSDVETAK KIRFRTPPP BACU012146/1-738 VNYLRAVDLI RHGGKKVQFL VAKSDVETAK KIRFRTPPP