KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:52 2014 Check: 00 .. Name: ENSP00000372654/1-323 Len: 397 Check: 5113 Weight: 1.00 Name: BACU017846/1-352 Len: 397 Check: 9525 Weight: 1.00 Name: ENSBTAP00000025341/1-323 Len: 397 Check: 6179 Weight: 1.00 Name: bmy_05948T0/1-323 Len: 397 Check: 4876 Weight: 1.00 Name: ENSTTRP00000011193/1-321 Len: 397 Check: 2223 Weight: 1.00 // 1 50 ENSP00000372654/1-323 MSDR------ ---------- ---------- PTARR----- ---------- BACU017846/1-352 MMDEWSAGSG AAEEEKAVRK TLEKNRSPEP PALRTTVSLA TLSSPTGLPQ ENSBTAP00000025341/1-323 MSDR------ ---------- ---------- PAARR----- ---------- bmy_05948T0/1-323 MSDR------ ---------- ---------- PAARQ----- ---------- ENSTTRP00000011193/1-321 MSDR------ ---------- ---------- PAGRQ----- ---------- 51 100 ENSP00000372654/1-323 ---------- ---------- --------W- ----GKCGPL CTRENIMVAF BACU017846/1-352 LCPSRSPPHL AGRVPGAPLV HTGLQDPLWE VLSESKCGPL CRRESIMVAF ENSBTAP00000025341/1-323 ---------- ---------- --------W- ----GKCGPL CTRESIMVAF bmy_05948T0/1-323 ---------- ---------- --------W- ----GKCGPL CRRESIMVAF ENSTTRP00000011193/1-321 ---------- ---------- --------W- ----GKCGPL CRRESIMVAF 101 150 ENSP00000372654/1-323 KGVWTQAFWK AVTAEFLAML IFVLLSLGST INWGGTEKPL PVDMVLISLC BACU017846/1-352 KGVWTQAFWK AVTAEFLAML IFVLLSLGST INWGGAEKPL PVDMVLISLC ENSBTAP00000025341/1-323 KGVWTQTFWK AVTAEFLAML IFVLLSLGST INWGGAEKPL PVDMVLISLC bmy_05948T0/1-323 KGVWTQAFWK AVTAEFLAML IFVLLSLGST INWGGAEKPL PVDMVLISLC ENSTTRP00000011193/1-321 KGVWTQAFWK AVTAE-LAML I-VLLSLGST INWGGAEKPL PVDMVLISLC 151 200 ENSP00000372654/1-323 FGLSIATMVQ CFGHISGGHI NPAVTVAMVC TRKISIAKSV FYIAAQCLGA BACU017846/1-352 FGLSIATMVQ CFGHISGGHI NPAVTVAM-- ---------- ---------- ENSBTAP00000025341/1-323 FGLSIATMVQ CFGHISGGHI NPAVTVAMVC TRRISIAKSV FYIAAQCLGA bmy_05948T0/1-323 FGLSIATMVQ CFGHISGGHI NPAVTVAMVC TRKISIAKSV FYIAAQCLGA ENSTTRP00000011193/1-321 FGLSIATMVQ CFGHISGGHI NPAVTVAMVC TRKISIAKSV FYIAAQCLGA 201 250 ENSP00000372654/1-323 IIGAGILYLV TPPSVVGGLG VTMVHGNLTA GHGLLVELII TFQLVFTIFA BACU017846/1-352 ---------- ---------- ---VHGNLSA GHGLLVELII TFQLVFTIFA ENSBTAP00000025341/1-323 IIGAGILYLV TPPSVVGGLG VTTVHGNLSA GHGLLVELII TFQLVFTIFA bmy_05948T0/1-323 IIGAGILYLV TPPSVVGGLG VTTVHGNLSA GHGLLVELII TFQLVFTIFA ENSTTRP00000011193/1-321 IIGAGILYLV TPPSVVGGLG VTTVHGNLSA GHGLLVELII TFQLVFTIFA 251 300 ENSP00000372654/1-323 SCDSKRTDVT GSIALAIGFS VAIGHLFAIN YTGASMNPAR SFGPAVIMGN BACU017846/1-352 SCDSKRTDVT GSIALAIGFS VAIGHLFAIN YTGAGMNPAR SFGPAVIMGN ENSBTAP00000025341/1-323 SCDSKRTDVT GSIALAIGIS VAIGHLFAIN YTGASMNPAR SFGPAVIMGN bmy_05948T0/1-323 SCDSKRTDVT GSIALAIGFS VAIGHLFAIN YTGASMNPAR SFGPAVIMGN ENSTTRP00000011193/1-321 SCDSKRTDVT GSIALAIGFS VAIGHLFAIN YTGASMNPAR SFGPAVIMGN 301 350 ENSP00000372654/1-323 WENHWIYWVG PIIGAVLAGG LYEYVFCPDV EFKRRFKEAF SKAAQQTKGS BACU017846/1-352 WENHWIYWVG PIIGAVLAGG LYEYVFCPDV ELKRRFKEAF NKAAQQTKGS ENSBTAP00000025341/1-323 WENHWIYWVG PIIGAVLAGG LYEYVFCPDV ELKRRFKEAF SKAAQQTKGS bmy_05948T0/1-323 WENHWIYWVG PIIGAVLAGG LYEYVFCPDV ELKRRFKEAF NKAAQQTKGS ENSTTRP00000011193/1-321 WENHWIYWAG PIIGAVLAGG LYEYVFCPDV ELKRRFKEAF NKAAQQTKGS 351 400 ENSP00000372654/1-323 YMEVEDNRSQ VETDDLILKP GVVHVIDVDR GEEKKGKDQS GEVLSSV BACU017846/1-352 YMEVEDNRSQ VETDDLILKP GVVHVIDIDR GEEKKGKDPS GEVLSSV ENSBTAP00000025341/1-323 YMEVEDNRSQ VETDDLILKP GVVHVIDIDR GEEKKGKDPS GEVLSSV bmy_05948T0/1-323 YMEVEDNRSQ VETDDLILKP GVVHVIDIDR GEEKKGKDPS GEVLSSV ENSTTRP00000011193/1-321 YMEVEDNRSQ VETDDLILKP GVVHVIDIDR GEEKKGKDPS GEVLSSV