KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:53 2014 Check: 00 .. Name: BACU000101/1-484 Len: 549 Check: 9580 Weight: 1.00 Name: ENSTTRP00000004506/1-454 Len: 549 Check: 4035 Weight: 1.00 Name: ENSBTAP00000025345/1-454 Len: 549 Check: 1964 Weight: 1.00 Name: bmy_12882T0/1-454 Len: 549 Check: 1989 Weight: 1.00 Name: ENSP00000346886/1-454 Len: 549 Check: 2466 Weight: 1.00 // 1 50 BACU000101/1-484 MHYGPPFQSV DTHRTGSVSE TLGDRTALGE TEAKQEEEVE VQSPPPRVSV ENSTTRP00000004506/1-454 MTKREAEELI EIEIDGT--- --------EK PECTEESIVE QTYTPA---- ENSBTAP00000025345/1-454 MTKREAEELI EIEIDGT--- --------EK AECTEESIVE QTYTPA---- bmy_12882T0/1-454 MTKREAEELI EIEIDGT--- --------EK PECTEESIVE QTYTPA---- ENSP00000346886/1-454 MTKREAEELI EIEIDGT--- --------EK AECTEESIVE QTYAPA---- 51 100 BACU000101/1-484 LFLGVVEVYD CAGKVTECKT KRIGELGSLV PREPPLPRAL VSRNLLGVVV ENSTTRP00000004506/1-454 ---------E CVSQAIDIN- EPIGNLKKLL E-----PRLQ CSLDAHEICL ENSBTAP00000025345/1-454 ---------E CVSQAIDIN- EPIGNLKKLL E-----PRLQ CSLDAHEICL bmy_12882T0/1-454 ---------E CVSQAIDIN- EPIGNLKKLL E-----PRLQ CSLDAHEICL ENSP00000346886/1-454 ---------E CVSQAIDIN- EPIGNLKKLL E-----PRLQ CSLDAHEICL 101 150 BACU000101/1-484 PDPGVPGRRE GGVGVSLRRF RGKGPGASHF ESLELRVLPG ETLHVEPAPL ENSTTRP00000004506/1-454 QDI------- ---------- ---------- ---------- ---------- ENSBTAP00000025345/1-454 QDI------- ---------- ---------- ---------- ---------- bmy_12882T0/1-454 QDI------- ---------- ---------- ---------- ---------- ENSP00000346886/1-454 QDI------- ---------- ---------- ---------- ---------- 151 200 BACU000101/1-484 RFSAGSGLRA GATGPNPERL DPERSLFDQG VKTDGTVQLS VQVISYQGIE ENSTTRP00000004506/1-454 ---------- --------QL DPERSLFDQG VKTDGTVQLS VQVISYQGIE ENSBTAP00000025345/1-454 ---------- --------QL DPERSLFDQG VKTDGTVQLS VQVISYQGIE bmy_12882T0/1-454 ---------- --------QL DPERSLFDQG VKTDGTVQLS VQVISYQGIE ENSP00000346886/1-454 ---------- --------QL DPERSLFDQG VKTDGTVQLS VQVISYQGIE 201 250 BACU000101/1-484 PKLNILEIVK PAETVEVVID PDAHHAEAEA HLVEEAQVIT LDGTKHITAI ENSTTRP00000004506/1-454 PKLNILEIVK PAETVEVVID PDAHHAEAEA HLVEEAQVIT LDGTKHITTI ENSBTAP00000025345/1-454 PKLNILEIVK PAETVEVVID PDAHHAEAEA HLVEEAQVIT LDGTKHITTI bmy_12882T0/1-454 PKLNILEIVK PAETVEVVID PDAHHAEAEA HLVEEAQVIT LDGTKHITTI ENSP00000346886/1-454 PKLNILEIVK PADTVEVVID PDAHHAESEA HLVEEAQVIT LDGTKHITTI 251 300 BACU000101/1-484 SDETSEQVTR WAAALEGYRK EQERLGIPYD ---------- ---------- ENSTTRP00000004506/1-454 SDETSEQVTR WAAALEGYRK EQERLGIPYD PIQWSTDQVL HWVVWVMKEF ENSBTAP00000025345/1-454 SDETSEQVTR WAAALEGYRK EQERLGIPYD PIQWSTDQVL HWVVWVMKEF bmy_12882T0/1-454 SDETSEQVTR WAAALEGYRK EQERLGIPYD PIQWSTDQVL HWVVWVMKEF ENSP00000346886/1-454 SDETSEQVTR WAAALEGYRK EQERLGIPYD PIQWSTDQVL HWVVWVMKEF 301 350 BACU000101/1-484 ---------- ---------- ---------- ---------- -----VLASQ ENSTTRP00000004506/1-454 SMTDIDLTTL NISGRELCSL NQEDFFQRVP RGEILWSHLE LLRKYVLASQ ENSBTAP00000025345/1-454 SMTDIDLTTL NISGRELCSL SQEDFFQRVP RGEILWSHLE LLRKYVLASQ bmy_12882T0/1-454 SMTDIDLTTL NISGRELCSL NQEDFFQRVP RGEILWSHLE LLRKYVLASQ ENSP00000346886/1-454 SMTDIDLTTL NISGRELCSL NQEDFFQRVP RGEILWSHLE LLRKYVLASQ 351 400 BACU000101/1-484 EQQMNEIVTI DQPVQIIPAS VQSATPTAIK AINSSAKAAK VQRAPRISGE ENSTTRP00000004506/1-454 EQQMNEIVTI DQPVQIIPAS VQSATPTAIK AINSSAKAAK VQRAPRISGE ENSBTAP00000025345/1-454 EQQMNEIVTI DQPVQIIPAS VQSATPTAIK AINSSAKAAK VQRAPRISGE bmy_12882T0/1-454 EQQMNEIVTI DQPVQIIPAS VQSATPTAIK AINSSAKAAK VQRAPRISGE ENSP00000346886/1-454 EQQMNEIVTI DQPVQIIPAS VQSATPTTIK VINSSAKAAK VQRAPRISGE 401 450 BACU000101/1-484 DRSSPGNRTG NNGQIQLWQF LLELLTDKDA RDCISWVGDE GEFKLNQPEL ENSTTRP00000004506/1-454 DRSSPGNRTX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSBTAP00000025345/1-454 DRSSPGNRTG NNGQIQLWQF LLELLTDKDA RDCISWVGDE GEFKLNQPEL bmy_12882T0/1-454 DRSSPGNRTG NNGQIQLWQF LLELLTDKDA RDCISWVGDE GEFKLNQPEL ENSP00000346886/1-454 DRSSPGNRTG NNGQIQLWQF LLELLTDKDA RDCISWVGDE GEFKLNQPEL 451 500 BACU000101/1-484 VAQKWGQRKN KPTMNYEKLS RALRYYYDGD MICKVQGKRF VYKFVCDLKT ENSTTRP00000004506/1-454 XXXXXXXXXX XXXXXXXXXX XXXXYYYDGD MICKVQGKRF VYKFVCDLKT ENSBTAP00000025345/1-454 VAQKWGQRKN KPTMNYEKLS RALRYYYDGD MICKVQGKRF VYKFVCDLKT bmy_12882T0/1-454 VAQKWGQRKN KPTMNYEKLS RALRYYYDGD MICKVQGKRF VYKFVCDLKT ENSP00000346886/1-454 VAQKWGQRKN KPTMNYEKLS RALRYYYDGD MICKVQGKRF VYKFVCDLKT 501 550 BACU000101/1-484 LIGYSAAELN RLVTECEQKK LAKMQLHGIA QPVTAVALAT ASLQTEKDN ENSTTRP00000004506/1-454 LIGYSAAELN RLVTECEQKK LAKMQLHGIA QPVTAVALAT ASLQTEKDN ENSBTAP00000025345/1-454 LIGYSAAELN RLVTECEQKK LAKMQLHGIA QPVTAVALAT ASLQTEKDN bmy_12882T0/1-454 LIGYSAAELN RLVTECEQKK LAKMQLHGIA QPVTAVALAT ASLQTEKDN ENSP00000346886/1-454 LIGYSAAELN RLVTECEQKK LAKMQLHGIA QPVTAVALAT ASLQTEKDN