KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:54 2014 Check: 00 .. Name: ENSP00000324196/1-1374 Len: 1518 Check: 3190 Weight: 1.00 Name: ENSBTAP00000025356/1-1365 Len: 1518 Check: 3490 Weight: 1.00 Name: ENSTTRP00000000531/1-1364 Len: 1518 Check: 4521 Weight: 1.00 Name: bmy_02274T0/1-912 Len: 1518 Check: 2865 Weight: 1.00 Name: BACU011603/1-1469 Len: 1518 Check: 9430 Weight: 1.00 // 1 50 ENSP00000324196/1-1374 MSSSFFNPSF AFSSHFDP-- ---------- ---------- ---------- ENSBTAP00000025356/1-1365 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000531/1-1364 MSSSFFNPSF AFSSHFDP-- ---------- ---------- ---------- bmy_02274T0/1-912 ---------- ---------- ---------- ---------- ---------- BACU011603/1-1469 MSSSFFNPSF AFSSHFDPVG PWSASQHPPS RVSQPLSVPS HSYGNDDSPW 51 100 ENSP00000324196/1-1374 -----DGAPL SELSWPSSLA VVAVSFSGLF AVIVLMLACL CCKKGGIGFK ENSBTAP00000025356/1-1365 -----DGAPL SEFSWSSSLS VVAVSFSGLF TVIALMLACL CCKKGGIGFK ENSTTRP00000000531/1-1364 -----DGAPL SELSWSSSLS VVAVSFSGLF TVIALMLACL CCKKGGIGFK bmy_02274T0/1-912 ---------- ---------- ---------- ---------- ---------- BACU011603/1-1469 GPLQRDGAPL SELSWSSSLS VVAVSFSGLF TVIALMLACL CCKKGGIGFK 101 150 ENSP00000324196/1-1374 EFENAEGDEY AADL-AQGSP ATAAQNGPDV YVLPLTEVSL PMAKQPGRSV ENSBTAP00000025356/1-1365 EFENAEGEEY AADFSAQGSP ATAAQNGPDV YVLPLTEVSL PMAKQPGRSV ENSTTRP00000000531/1-1364 EFENAEGEEY PADFSAQGSP AAAAQNGPDV YVLPLTEVSL PMAKQPGRSV bmy_02274T0/1-912 ---------- ---------- ---------- ---------- ---------- BACU011603/1-1469 EFENAEGEEY AADFSAQGSP AAAAQNGPDV YVLPLTEVSL PMAKQPGRSV 151 200 ENSP00000324196/1-1374 QLLKSTDVGR HSLLYLKEIG RGWFGKVFLG EVNSGISSAQ VVVKELQASA ENSBTAP00000025356/1-1365 QLLKSTDLGR HSLLYLEEIG HGWFGKVFLG EVNSGISSTQ VVVKELKASA ENSTTRP00000000531/1-1364 QLLKSTDLGR HSLLYLEEIG HGWFGKXXXX XXXXXXXXXX XXXXXXXXXX bmy_02274T0/1-912 ---------- ---------- ---------- ---------- ---------- BACU011603/1-1469 QLLKSTDLGR HSLLYLEEIG HGWFGKVFLG EVNSGISSTQ VVVKELKASA 201 250 ENSP00000324196/1-1374 SVQEQMQFLE EVQPYRALKH SNLLQCLAQC AEVTPYLLVM EFCPL----- ENSBTAP00000025356/1-1365 SVQEQMQFLE EAQPYRALQH SNLLQCLAQC AEVTPYLLVM EFCPM----- ENSTTRP00000000531/1-1364 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXX----- bmy_02274T0/1-912 ---------- ---------- ---------- ---------- ---------- BACU011603/1-1469 SVQEQMQFLE EAQPYRALQH SNLLQCLAQC AEVTPYLLVM EFCPMVSRLL 251 300 ENSP00000324196/1-1374 ---------- --GDLKGYLR SCRVAESMAP DPRTLQRMAC EVACGVLHLH ENSBTAP00000025356/1-1365 ---------- --GDLKGYLR SCRVAEAMAP DPLTLQRMAC EVACGVLHLH ENSTTRP00000000531/1-1364 ---------- --GDLKGYLR SCRVAESMAP DPLTLQRMAC EVACGVLHLH bmy_02274T0/1-912 ---------- ---------- ---------- ---------- ---------- BACU011603/1-1469 PGPPAPALRF WKGDLKGYLR SCRVAESMAP DPLTLQRMAC EVACGVLHLH 301 350 ENSP00000324196/1-1374 RNNFVHSDLA LRNCLLTADL TVKIGDYGLA HCKYREDYFV TADQLWVPLR ENSBTAP00000025356/1-1365 RNNFVHSDLA LRNCLLTADL TVKIGDYGLS HGKYREDYFV TADQLWVPLR ENSTTRP00000000531/1-1364 RNNYVHSDLA LRNCLLTADL TVKIGDYGLS HGKYREDYFV TADQLWVPLR bmy_02274T0/1-912 ---------- ---------- ---------- ---------- ---------- BACU011603/1-1469 RNNYVHSDLA LRNCLLTADL TVKIGDYGLS HGKYREDYFV TADQLWVPLR 351 400 ENSP00000324196/1-1374 WIAPELVDEV HSNLLVVDQT KSGNVWSLGV TIWELFELGT QPYPQHSDQQ ENSBTAP00000025356/1-1365 WIAPELVDEV HCNLLVVDQT KASNVWSLGV TIWELFELGA QPYPHHSDRQ ENSTTRP00000000531/1-1364 WIAPELVDEV HCNLLVVDQT KASNVWSLGV TIWELFELGA QPYPHHSDRQ bmy_02274T0/1-912 ---------- ---------- ---------- ---------- ---------- BACU011603/1-1469 WIAPELVDEV HCNLLVVDQT KASNVWSLGV TIWELFELGA QPYPHHSDRQ 401 450 ENSP00000324196/1-1374 VLAYTVREQQ LKLPKPQLQL TLSDRWYEVM QFCWLQPEQR PTAEEVHLLL ENSBTAP00000025356/1-1365 VLAYAVREQQ LKLPKPQLQL TLSDRWYEVM QFCWLQPEQR PTAEEVHLLL ENSTTRP00000000531/1-1364 VLAYAVREQQ LKLPKPQLQL TLSDRWYEVM QFCWLQPEQR PTAEEVHLLL bmy_02274T0/1-912 ---------- ---------- ---------M QFCWLQPEQR PTAEEVHLLL BACU011603/1-1469 VLAYAVREQQ LKLPKPQLQL TLSDRWYEVM QFCWLQPEQR PTAEEVHLLL 451 500 ENSP00000324196/1-1374 SYLCAKGATE AEEEFERRWR SLRPGGGGVG PGPGAAGPML GGVVELAAAS ENSBTAP00000025356/1-1365 SYLCAKGATE AEEEFERRWR SLRPGGGSAG AGLGVAGLAL GGTGELLATS ENSTTRP00000000531/1-1364 SYLCAKGATE AEEEFERRWR SLRPVGGSVG PGLGAAGMAL GGMGELAATS bmy_02274T0/1-912 SYLCAKGATE AEEEFERRWR SLRPGGGGAG PGLGAAGLAL GGTGELAATS BACU011603/1-1469 SYLCAKGATE AEEEFERRWR SLRPGGGSAG PGLGAAGLAL GGTGELAAAS 501 550 ENSP00000324196/1-1374 SFPLLEQFAG DGFHADGDDV LTVTETSRGL NFEYKWEAGR GAEAFP---A ENSBTAP00000025356/1-1365 SFPLLEQFAG DGFHAEGDDV LTVTETSHGL NFEYKWEAGR GAEAFPPPEG ENSTTRP00000000531/1-1364 SFPLLEQFAG DSFHTDGDDV LTVTETSRGL NFEYKWEAGR GSDAFPPPEG bmy_02274T0/1-912 SFPLLEQFAG DSFHTDGDDV LTVTETSRGL NFEYKWEAGR GSEAFPPPEG BACU011603/1-1469 SFPLLEQFAG DSFHTDGDDV LTVTETSRGL NFEYKWEACR GSEAFPPPEG 551 600 ENSP00000324196/1-1374 TLSPGRTARL QELCAPDGAP PGVVPVLSAH SPSLGSEYFI RLEEAAPAAG ENSBTAP00000025356/1-1365 ALSPGRDARL QELCVPDGAP PGVVPVLSAH SPSVGSEYFI RLEDPAPAAD ENSTTRP00000000531/1-1364 ALSPGRDARL QELCVPDGAP PGVVPVLSAH SPSVGSEYFI RLEDPAPAAG bmy_02274T0/1-912 ALSPGRDARL QELCIPDGAP PGVVPVLSAH SPSVGSEYFI RLEDPAPAAG BACU011603/1-1469 ALSPGRDARL QELCIPDGAP PGVVPVLSAH SPSVGSEYFI RLEDPAPAAG 601 650 ENSP00000324196/1-1374 HDPDCAGCAP SP------PA TADQDDDSDG STAASLAMEP LLGHGPPVDV ENSBTAP00000025356/1-1365 HDPDCTGCAP STLAAALRPD GSDHDDDSDG STAASLVMEP LLGHAPPADG ENSTTRP00000000531/1-1364 HDPDCAGCAP SP------PC APDHDDDSDG STAASLVMEP LLGHAPPADG bmy_02274T0/1-912 HDPDCAGCAP STLAATLRPD SSDHDDDSDG SEAASLVMEP LLGHAPPADG BACU011603/1-1469 HDPDCAGCAP STLAATLRPD GSDHDDDSDG SEAASLVMEP LLGHAPPADG 651 700 ENSP00000324196/1-1374 PWGRGDHYPR RSLARDPLCP SRSPSPSAGP LSLAEGGAED ADWGVAAFCP ENSBTAP00000025356/1-1365 PWGHCDYYPC KSRARDLSCA SR--SPSPET PMLAEPGAED IDWGVGAFCP ENSTTRP00000000531/1-1364 PWGHCDYHLC RSHARDLPCT SR--SPSPET PMLAEPRAED IDWGVGAFCP bmy_02274T0/1-912 PWGHFDYYPC RSHARDLPCT SRSPSPSPET PMLAEPRAED IDWGVGAFCP BACU011603/1-1469 PWGHFDYYPC RSHARDLPCT SRSPSPSPET PMLAEPRAED IDWGVGAFCP 701 750 ENSP00000324196/1-1374 AFFEDPLGTS PLGSSGAPPL PLTGEDELEE VGARRAAQRG HWRSNVSANN ENSBTAP00000025356/1-1365 AFFEDPLGTS PSRSSGDRLS P--GGEELGE AEASRAAQYR HWSSNV-ANN ENSTTRP00000000531/1-1364 PFFEDPLGTS PSASSRAQPS P--GGEELGE AGMPRAAQHR HWSSNVSANN bmy_02274T0/1-912 PFFEDPLGTS PSGSSGARPS P--GGEELGE TEMPRAAQHR HWSSNVSANN BACU011603/1-1469 PFFEDPLGTS PSGSSGTRPS P--GGEELGE AEMPRAAQHR HWSSNVSANN 751 800 ENSP00000324196/1-1374 NSGSRCPESW DPVSAGGHAE GCPSPKQTPR ASPEPGY--- ---PGEPLLG ENSBTAP00000025356/1-1365 NSGSRAPESW VS-GLSGYTD CCPGMKQTLW PVPELGHPLT PEDPRESLLG ENSTTRP00000000531/1-1364 NSSNRAPEFW VP-GLSGYTD CCPGVKQALQ TVPELGD--- ---LREPLLG bmy_02274T0/1-912 NSGSRAPEFW VP-GLSGYTD CCPGVKQALQ TVPELGHPLI PEDPREPFLG BACU011603/1-1469 NSGSRVPEFW VP-GLSGYTD CCPGVKQALQ TVPELGHPLI PEDRREPLLG 801 850 ENSP00000324196/1-1374 LQAASA-QEP GCCPGLPHLC SAQGLAPAPC LVTPSWTETA SSGGDHPQAE ENSBTAP00000025356/1-1365 PKGASLGQEL GHCLGLSHLY PAEGLTPAPC LVASPWTEAA ISGGDSPQAE ENSTTRP00000000531/1-1364 PKGASSGKEM GRCLGLPHLY PAEGLTPAPC LVTSPWTEAA RSGGDSPQAE bmy_02274T0/1-912 PKGASSGKKL GRCLGLPHLY PAEGLTPALC LVTSPWTEAA RSGGDSPQAE BACU011603/1-1469 PKGASSGKKL GRCLGLPHLY PAEGLTPAPC LVTFPWIEAA RSGGDSPQAE 851 900 ENSP00000324196/1-1374 PKLATEAEGT TGPRLPLPSV PSPSQEGAPL PSEEASAPDA PDALPDSPTP ENSBTAP00000025356/1-1365 PRLAEEAEGS AGLQLPLPSI PSPSQEGAPL PAEEAS---T PPTLPASPTP ENSTTRP00000000531/1-1364 PRLAEEAEGS AGLQLPLPSI PSPSQEGALL PAEEAS---T -ATLPASPTP bmy_02274T0/1-912 PRLAEEAKGS AGLQLPLFSI PSPSQEGALL PAEEAS---T PPTLLASPMP BACU011603/1-1469 PRLAEEAEGS GGLQLPLPSI PSPSQEGALL PAEEAS---T PPTLPASPMP 901 950 ENSP00000324196/1-1374 ATGGEVSAIK LASAL--NGS SSSPEVEAPS SEDEDTAEAT SGIFTDTSSD ENSBTAP00000025356/1-1365 -TGSQAPATE PAQTR--DSG SSSPELEAPR SEDEDTTEAT SGVFTDLSSD ENSTTRP00000000531/1-1364 -TGSPQPATE PVQALDSDSG SSSPELEAPG SEDEDTTEAT SGVFTDLSSD bmy_02274T0/1-912 -TGSPQPATE PVQALDSDSG SSFPELEAPG SEDEDTTEAT SGVFTDLSSD BACU011603/1-1469 -TGSPQPATE PVQALDSDSG SSFPELEAPG SEDEDTTEAT SGVFTDLSSD 951 1000 ENSP00000324196/1-1374 GLQARRPDVV PAFRSLQKQV GTPDSLDSLD IPSSASDGGY EVFSPSATGP ENSBTAP00000025356/1-1365 GPQAEKLDVT PAFRSLQKQV GTPDSLDSLD IPSSASDGGC EVFSPSAVST ENSTTRP00000000531/1-1364 GPQAEKPDVT PAFRSLQKQV GTPDSLDSLD IPSSASDGGS EVFSPLAVGT bmy_02274T0/1-912 GPQAEKPDVT PAFRSLQKQV GTPDSLDSLD IPSSASDGGS EVFSPLAVGT BACU011603/1-1469 GPQAEKPDVT PAFRSLQKQV GTPDSLDSLD IPSSASDGGS EVFSPLAVGT 1001 1050 ENSP00000324196/1-1374 SGGQPRALDS GYDTENYESP EFVLKEAQEG CEPQAFAELA SEGEGPGPET ENSBTAP00000025356/1-1365 PGGQLQALDS GYDTENYESP EFILKESHEP CEPEAFGELA SEGESPGPET ENSTTRP00000000531/1-1364 PGGQPRALDS GYDTENYESP EFVLKEAHEP CEPEALEELA SEGESPGPET bmy_02274T0/1-912 PGGQPRALDS GYDTENYESP EFVLKEAHEP CEPEAFEELA SEGESPGPET BACU011603/1-1469 PGGQPRALDS GYDTENYESP EFVLKEAHEP CEPEAFEELA SEGESPGPET 1051 1100 ENSP00000324196/1-1374 RLSTSLSGLN EKNPYRDSAY FSDLEAEAEA TSGPEKKCGG DRAPGPELGL ENSBTAP00000025356/1-1365 RLSASLGGLS EKNPYRDSAY FSDLDTEPEP PVGPKEKHGG VPVPRPEPDL ENSTTRP00000000531/1-1364 RLSASLGGLS EKNPYRDSAY FSDLDTEPEP PLGPKEKQGG VPVPGPEPDV bmy_02274T0/1-912 RLSASLGGLS EKNPYRDSAY FSDLDTEPEP PLGPKETQGG VPVPGPEPDL BACU011603/1-1469 RLSASLGGLS EKNPYRDSAY FSDLDTEPEP PLGPKETQGG VPVPGPEPDL 1101 1150 ENSP00000324196/1-1374 PSTGQPSEQV CLRP---GVS GEAQGSGPGE VLPPLL---- QLEGSSPEPS ENSBTAP00000025356/1-1365 DSPKSPRLQS AQPSPELGVP GEAQGTGPRQ V-PPLPLSLS LPEDSSPEPS ENSTTRP00000000531/1-1364 ESLKSPRLPS ALPSPESGML GEAQGSGPRE V-PPLP---- LFEGSSPEPS bmy_02274T0/1-912 ESPKSPRLLS AQPSPELGML GEAQGSGPRE V-PPLP---- LPEDSSPEPS BACU011603/1-1469 ESPKSPRLPS AQPSPELGML GEAQGSGPRE V-PPLP---- LPEDSSPEPS 1151 1200 ENSP00000324196/1-1374 TCPSGLVPEP PEPQGPAKVR PGPSPSCSQF FLLTPVPLRS EGNSSEFQGP ENSBTAP00000025356/1-1365 ACPTDPGREP PWPQDPAQVP PMPSPVSSKI FLLTPVRPSS ESHRPELQET ENSTTRP00000000531/1-1364 AGPGGPRLEP PWPQDPAQAP PMPSPGHSKI FLLTPVRPSS EGHRPELQET bmy_02274T0/1-912 ACPRGPRLEP PWPQDPAQVP PMPSPGRSKI FLLTPVRPSS GSHRPELQET BACU011603/1-1469 ACPRGLRLEP PWPQDPA--- ---------- ---------- -------QET 1201 1250 ENSP00000324196/1-1374 PGLLSGPAPQ KRMGGPGTPR APLRLALPGL PAALEGRPEE EEEDSEDSDE ENSBTAP00000025356/1-1365 LGLLSGSNLQ ERTGGPGASR TPLCLALPGL PVAPEGRPEE EEEDSEDSDE ENSTTRP00000000531/1-1364 LGLLSGSGLQ ERTGGPGAPR TPLCLALPAV PAAPEGRPEE EEDDSEDSDE bmy_02274T0/1-912 LALLSGSGLQ ERTGGPGAPR TPLCLALPAV PAAPEGRPEE EEEDSEDSDE BACU011603/1-1469 LALLSGSGLQ ERTGDPGAPR TPLCLALPAV PAAPEARPEE EEEDSEDSDE 1251 1300 ENSP00000324196/1-1374 SDEELRCYSV QEPSEDSEEE APAVPVVVAE SQSARNLRSL LKMPSLLSET ENSBTAP00000025356/1-1365 SDEELRCYSI QEPSEESEEE VPPVPVVVAE SQSARNLRSL LKMPSLLSEA ENSTTRP00000000531/1-1364 SDEELRCYSI QEPSEESEEE APPVPVVVAE SQSARNLRSL LKMPSLLSEA bmy_02274T0/1-912 SDEELRCYSI QEPSEESEEE APPVPVVVAE SQSARNLRSL LKMPSLLSEA BACU011603/1-1469 SDEELRCYSV QEPSEESEEE APPVPVVVAE SQSARNLRSL LKMPNLLSEA 1301 1350 ENSP00000324196/1-1374 FCEDLERKKK AVSFFDDVTV YLFDQESPTR ELGEPFPGAK ESPPTFLRGS ENSBTAP00000025356/1-1365 FCEDLERKKK AVSFFDDVTV YLFDQESPTR ELGEPFPGAK ESPPTFPVGS ENSTTRP00000000531/1-1364 FCEDLERKKK AVSFFDDVTV YLFDQESPTR ELGEPFPGAK ESSPTFPVGS bmy_02274T0/1-912 FCEDLERKKK AVSFFDDVTV YLFDQVG--- ---------- --------GR BACU011603/1-1469 FCEDLERKKK AVSFFDDVTV YLFDQESPTR ELGEPFPGAK ESSPTFPAGS 1351 1400 ENSP00000324196/1-1374 PGSPSAPNRP QQADGSPNGS TAEEGGGFAW DDDFPLMTAK A-AFAMALDP ENSBTAP00000025356/1-1365 PGSPSASCRP RRADPSPEGP ATEQDGEFEW NDGLMLSSAQ EPASRIPAET ENSTTRP00000000531/1-1364 PGSPSTPGRP RRADRSPDGP AAEEGGGFEW DDGLPPTPAQ A----YPVVP bmy_02274T0/1-912 PG-------- ---------- ---------W ---------- --ALR----- BACU011603/1-1469 PGSPSTPGRH RRADCSPDVP AAEEGGGFEW DDGLPLTPAQ EPALRVPAAP 1401 1450 ENSP00000324196/1-1374 AAPAPAAPTP TPAPFSRFTV SPAPTSRFSI THVSDSDAES KR-G------ ENSBTAP00000025356/1-1365 PKSV------ APSPFSRFTV SPAPASRFSI THVSDSDSGS VGAG------ ENSTTRP00000000531/1-1364 AAPA------ KPSPFSRFTV SPAPASRFSI THVTDSDSGS VG-G------ bmy_02274T0/1-912 ---------- ---------- ---------- -----GEWGV CG-G------ BACU011603/1-1469 PKPA------ KPSPFSRFTV SPAPASRFSI THVSDSDSGS VG-GFAQCKK 1451 1500 ENSP00000324196/1-1374 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025356/1-1365 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000000531/1-1364 ---------- ---------- ---------- ---------- ---------- bmy_02274T0/1-912 ---------- ---------- ---------- ---------- ---------- BACU011603/1-1469 RTPGSCVPAP KSVAVSPSLN QLDRKLSLPT GSGLAPAWVP LEPCKGTEVG 1501 1550 ENSP00000324196/1-1374 --PEAGAGGE SKEA---- ENSBTAP00000025356/1-1365 --PVPGGSED GLSG---- ENSTTRP00000000531/1-1364 --PTAGAGGS CKEA---- bmy_02274T0/1-912 ----TGSRGR LVLF---- BACU011603/1-1469 SPKDGGLSGR SPAASAPV