KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:56 2014 Check: 00 .. Name: ENSP00000325561/1-726 Len: 783 Check: 7074 Weight: 1.00 Name: ENSBTAP00000025384/1-721 Len: 783 Check: 8647 Weight: 1.00 Name: ENSTTRP00000010279/1-717 Len: 783 Check: 9139 Weight: 1.00 Name: bmy_13160T0/1-652 Len: 783 Check: 7045 Weight: 1.00 Name: BACU011562/1-772 Len: 783 Check: 9341 Weight: 1.00 // 1 50 ENSP00000325561/1-726 ---------- ---------- ---------- ---------- ---------- ENSBTAP00000025384/1-721 ---------- ---------- ---------- ---------- ---------- ENSTTRP00000010279/1-717 ---------- ---------- ---------- ---------- ---------- bmy_13160T0/1-652 ---------- ---------- ---------- ---------- ---------- BACU011562/1-772 MLNPGNCWGL RQRGLPNGRI STWNCLLPEG DGEGLRPLEG ERYNPNFNPI 51 100 ENSP00000325561/1-726 --MLLPRSVS SERAPGVPEP ----EELWEA EMERLRGSGT PVRGLPYAMM ENSBTAP00000025384/1-721 --MQRQWSV- --QAPGEPEA EPGGEELCEQ EMKRLCLSQH PVRVLPYAMM ENSTTRP00000010279/1-717 --MLRQWSV- --QASGEPEP EPAGEELWEQ EMERRCSSQE PVRLLPYAMV bmy_13160T0/1-652 --MLRQWSV- --QAPGEPEP EPAGEELWEQ EMERLCSSQE PVRVLPYAMV BACU011562/1-772 AEMLRQWSV- --QAPGEPEP EPTGEELWEQ EMERLCSSQE PVRVLPYAMV 101 150 ENSP00000325561/1-726 DKRLIWQLRE PAGVQTLRWQ RWQRRRQTVE RRLREAAQRL ARGLGLWEGA ENSBTAP00000025384/1-721 DKRFIRQLRE PEGVKTSCWQ QWRRRRQTAG RRLGEAARRL TRGCGLWEGA ENSTTRP00000010279/1-717 DKRFIRQLRE PEGVKTSCWQ QWRHRQQTAG RRLGEAARRL ARGCGLWEGA bmy_13160T0/1-652 DKRFIRQLRE PEGVKTSCWQ QWRHRQQTAG RRLGEAARRL ARGCGLWEGA BACU011562/1-772 DKRFIRQLRE PEGVKTSCWQ QWRHRQQTAR RRLGEAARRL ARGCGLWEGA 151 200 ENSP00000325561/1-726 LYEIGGLFGT GIRSYFTFLR FLLLLNLLSL LLTASFVLLP LVWLRPPDPG ENSBTAP00000025384/1-721 LYEIGGLFGT GIQSYFTFLR FLLLLNLLTL LLTSSFVLLP LVWLRPPDPG ENSTTRP00000010279/1-717 LYEIGGLFGT GIQSYFTFLR FLLLLNLLTL LLTTSFVLLP LTWLRPPDRG bmy_13160T0/1-652 LYEIGGLFGT GIQSYFTFLR FLLLLNLLTL LLTTSFVLLP LTWLRPPDRG BACU011562/1-772 LYEIGGLFGT GIQSYFTFLR FLLLLNLLTL LLTTSFVLLP LTWLSPPDRG 201 250 ENSP00000325561/1-726 PTLNLTLQCP G-SRQSPPGV LRFHNQLWHV LTGRAFTNTY LFYGAYRVGP ENSBTAP00000025384/1-721 PALNFTLQCP GSGHLPQTGV SKFNNLLWNV FTGRAFNNTY LFYGAYRAGP ENSTTRP00000010279/1-717 PALNFTLQCP G-GHQPQTGV PKFNNLLWNV LTGRAFNNTY LFYGAYRAGP bmy_13160T0/1-652 PALNFTLQCP G-GHQPQTGV PKFNNLLWNV LTGR------ ---------- BACU011562/1-772 PALNFTLQCP G-GHQPQTGV PKFNNLLWNV FTSRAFNNTF LFYGTYRAGP 251 300 ENSP00000325561/1-726 ESSSVYSIRL AYLLSPLACL LLCFCGTLRR MVKGLPQKTL LGQGYQAPLS ENSBTAP00000025384/1-721 ESSSTYSIRL AYLLSPLACL LLCFCGILRR MVKGLPQKMF LGQDYRSPLS ENSTTRP00000010279/1-717 ESSSVYSIRL AYLLSPLACL LLCFCGILRR MVKGLPQKMF LGQDYRSPLS bmy_13160T0/1-652 ---------- ---------- ---------- ---GLPQKMF LGQDYRSPLS BACU011562/1-772 ESSSVYSIRL AYFLSPLACL LLCFCGILQR MVKGLPQKMF LGQDYRSPLS 301 350 ENSP00000325561/1-726 AKVFSSWDFC IRVQEAATIK KHEISNEFKV ELEEGRRFQL MQQQTRAQTA ENSBTAP00000025384/1-721 AKVFSSWDFC IRGQEAATIK RHEISNEFKM ELEEGRHLLL LQQQTRAHRA ENSTTRP00000010279/1-717 AKVFSSWDFC IQGQEAATIK KHEISNEFKV ELEEGRHLLM VQHQTRAQRA bmy_13160T0/1-652 AKVFSSWDFC IQGQEAATIK KHEISNEFKV ELEEGRHLLM VQHQTRAQRA BACU011562/1-772 AKVFSSWDFC IQGQEAATIK KHEISNEFKV ELEEGRHLLM VQHQTRAQRA 351 400 ENSP00000325561/1-726 CRLLSYLRVN VLNGLLVVGA ISAIFWATKY SQDNKEESLF LLLQYLPPGV ENSBTAP00000025384/1-721 CHLLTYLRVN ILIGLLVVGA ISAIFWATKY SQDNKEESLF LLLQYLPPGV ENSTTRP00000010279/1-717 CHLLTYLRVN ILIGLLVVGA ISAIFWATKY SQDNKEESLF LLLQYLPPGV bmy_13160T0/1-652 CHLLTYLRVN ILIGLLV--- ---------- ------ESLF LLLQYLPPGV BACU011562/1-772 CHLLTYLRVN ILIGLLVVGA ISAIFWATKY SQDNKEESLF LLLQYLPPGV 401 450 ENSP00000325561/1-726 IALVNFLGPL LFTFLVQLEN YPPNTEVNLT LIWCVVLKLA SLGMFSVSLG ENSBTAP00000025384/1-721 IALVNFLGPL LFVFLVQLEN YPPNTEVNLT LIWCVVLKLA SLGMFSFSLG ENSTTRP00000010279/1-717 IALVNFLGPL LFVFLVQLEN YPPNTEVNLT LIWCVVLKLA SLGMFSFSLG bmy_13160T0/1-652 IALVNFLGPL LFVFLVQLEN YPPNTEVNLT LIWCVVLKLA SLGMFSFSLG BACU011562/1-772 IALVNFLGPL LFVFLVQLEN YPPNTEVNLT LIWCVVLKLA SLGMFCFSLG 451 500 ENSP00000325561/1-726 QTILCIGRDK SSCESYGYNV CDYQCWENSV GEELYKLSIF NFLLTVAFAF ENSBTAP00000025384/1-721 QTVLCIGRNK TSCESYGYNA CDYQCWENSV GEELYKLSIF NFLLTVAFAF ENSTTRP00000010279/1-717 QTLLCFGRNK TSCESYGYNA CDYQCWENSV G-ELY-LSIF NFLLTVAFTF bmy_13160T0/1-652 QTVLCIGRNK TSCESYGYNA CDYQCWEDSV GEELYKLSIF NFLLMVAFTF BACU011562/1-772 QTVLCIGRNK TSCESYGYNA CDYQCWEDSV GEELYKLSIF NFLLMVAFTF 501 550 ENSP00000325561/1-726 LVTLPRRLLV DRFSGRFWAW LEREEFLVPK NVLDIVAGQT VTWMGLFYCP ENSBTAP00000025384/1-721 LVSLPRRMLV ERFSGRFWVW LDREEFLVPK NVLDIVEGQT VTWMGLFYCP ENSTTRP00000010279/1-717 LVSL-RRLLV ERFSGRFWAW LDREEFLLPK NVLDIVEGQT VTWMGLFYCP bmy_13160T0/1-652 LVSLPRRLLV ERFSGRFWAW LDREEFLLPK NVLDIVEGQT VTWMGLFYCP BACU011562/1-772 LVSLPRRLLV ERFSGRFWAW LDREEFLLPK NVLDIVEGQT VTWMGLFYCP 551 600 ENSP00000325561/1-726 LLPLLNSVFL FLTFYIKKYT LLKNSRASSR PFRASSSTFF FQLVLLLGLL ENSBTAP00000025384/1-721 LLPLLNSIFI FLTFYIKKYT LLRNSRASPR RFRASSSIFF FQLVLLLGLL ENSTTRP00000010279/1-717 LLPLLNSIFV FLTFYIKKYT LLRNSRASPR PFRASSSIFF FQLVLILGLL bmy_13160T0/1-652 LLPLLNSIFI FLTFYIKKYT LLRNSRASPR PFRASSSIFF FQLVLILGLL BACU011562/1-772 LLPLLNSIFI FLTFYIKKYT LLRNCRASPR PFRASSSIFF FQLVLILGLL 601 650 ENSP00000325561/1-726 LAAVPLGYVV SSIHSSWDCG LFTNYSAPWQ VVPELVALGL PPIGQRALHY ENSBTAP00000025384/1-721 LAAVPLGYVV SSIRSSWDCG LFANYSAPWQ VVPELVALWL PPPSQRILYY ENSTTRP00000010279/1-717 LAAVPLGYVV SSIRSSWDCG LFTNYSAPWQ VVPELVALRL PPPSQRILHY bmy_13160T0/1-652 LAAAPLGYVV SSIRSSWDCG LFTNYSAPWQ VVPELVALRL PPPSQRILHY BACU011562/1-772 LAAAPLGYVV SSIRSSWDCG LFTNYSAPWQ VVPELVALRL PPPSQRILHY 651 700 ENSP00000325561/1-726 LGSHAFSFPL LIMLSLVLTV CVSQTQANAR AIHRLRKQLV WQVQEKWHLV ENSBTAP00000025384/1-721 LGSHAFSFPL LILLSLVLTV CISQSQASSR AIRRLRKQLV WQVQEKWHLV ENSTTRP00000010279/1-717 LGSHASSFPL LILLSLVLTV CVSQSQASAR AIRGLRKQLV WQVQEKWHLV bmy_13160T0/1-652 LGSHAFSFPL LILLSLVLTV CVSQSQASAR AIRGLRKQLV WQVQEKWHLV BACU011562/1-772 LGSHAFRFPL LILLSLVLTV CVSQSQASAR AIRGLRKQLV WQVQEKWHLV 701 750 ENSP00000325561/1-726 EDLSRLLPEP GPSDSPGPKY PASQASRPQS FCPGCPCPGS PGHQAPRPGP ENSBTAP00000025384/1-721 DDLSRLLAEP GSGDSLGPES PVSRGSRPRS FCPGFPCPGS PGPRPRKPGP ENSTTRP00000010279/1-717 DDLSRLMSEP GSGDSLGPAS PHSRGSRPRS FCPGFPCPGS PGPRASRPEP bmy_13160T0/1-652 DDLSRLLPEP GSGDSLGPES PHSRGSRPRS LCPGFPCPGS PGPRPPRPEP BACU011562/1-772 DDLSRLLPEP GSGDSLGPES SHSRGSRPRS LCPGFPCPGS PGPRPPRPEP 751 800 ENSP00000325561/1-726 SVVDAAGLRS PCPGQHGAPA SARRFRFPSG AEL ENSBTAP00000025384/1-721 SLEDPAGLR- ------GVSV PAHRFRFPSG SEL ENSTTRP00000010279/1-717 SLEDPNGLR- ------GVRV PARSCRFPSG SEL bmy_13160T0/1-652 SLEDPAGLR- ------GVPV PARRCRFPSG SEL BACU011562/1-772 SLEDPAGLR- ------GAPV PIRRCRFPSG SEL