KEY: ENSP* - Homo sapiens (Human) ENSBTA* - Bos taurus (Cow) ENSTTR* - Tursiops truncatus (Dolphin) bmy_* - Balaena mysticetus (Bowhead whale) BACU* - Balaenoptera acutorostrata (Minke whale) Copy from below the line for a valid .msf file. ---------------------------------------------------------------------------------- NoName MSF: 5 Type: P Thu May 15 17:25:58 2014 Check: 00 .. Name: ENSTTRP00000011325/1-1018 Len: 1153 Check: 3998 Weight: 1.00 Name: ENSP00000245796/1-1056 Len: 1153 Check: 5033 Weight: 1.00 Name: ENSBTAP00000025391/1-1034 Len: 1153 Check: 1237 Weight: 1.00 Name: bmy_09036T0/1-967 Len: 1153 Check: 5337 Weight: 1.00 Name: BACU017765/1-843 Len: 1153 Check: 271 Weight: 1.00 // 1 50 ENSTTRP00000011325/1-1018 ---------- ---------- ---------- -------RMG DDGLCEHPKP ENSP00000245796/1-1056 ---------- ---------- ---------- -------MMG DYRLPDHPQP ENSBTAP00000025391/1-1034 ---------- ---------- ---------- -------IMG DDGLCGHPRP bmy_09036T0/1-967 GRCGVPVTPP AGAPSNLHNG LVKADASGDS CAACTLWMMG DDGLCEHPKP BACU017765/1-843 ---------- ---------- ---------- ---------- ---------- 51 100 ENSTTRP00000011325/1-1018 MELLDICLGD HMQLHPGAHL RQTRGRPGP- ---------- ---------- ENSP00000245796/1-1056 MEILNLYLGD SLEPHPGECP RETCSHEDPP EPFEEQTWAT DPPEPTRQNV ENSBTAP00000025391/1-1034 VETLDICLGD NLQPHSEAHL GETCGHPEP- ---------- ---------- bmy_09036T0/1-967 MEFLDIYLGD HTQLHPGAHL RETRGHPDP- ---------- ---------- BACU017765/1-843 MEFLDSYLGD HTQLHPGAHL KETRGHPDP- ---------- ---------- 101 150 ENSTTRP00000011325/1-1018 ---------- ---------- LGPCGEQTWA SDPPDSTRRD VHPGGSSPEP ENSP00000245796/1-1056 PPWGSGVELT HLGSWVHQDG LEPCQEQTRA TDPPESTRQD APPWGSGVEL ENSBTAP00000025391/1-1034 ---------- ---------- LEPHGEQTWA SDPPDAVRPD VCPQGSSPEP bmy_09036T0/1-967 ---------- ---------- LEPCGEQTWS SDPPDSTRQD VHPRGSSPEP BACU017765/1-843 ---------- ---------- LEPCGEQTWA SDPPDSTRRD VHPRGSSPEP 151 200 ENSTTRP00000011325/1-1018 AHPGSDSSQE GAGQKAAFPR SPRDSHPLGS PRQSQSTSTQ VVFWAGILQA ENSP00000245796/1-1056 THLGSPSAQR EHRQNTASPG SPVNSHLPGS PKQNRSTSTQ VVFWAGILQA ENSBTAP00000025391/1-1034 MHLGSGSSQE RAGQKTTSPG SPRDNQPLGS PGQSQSTSTQ VVFWAGILQA bmy_09036T0/1-967 THLGSGSSQE GAGQKAASPG STRDSHPLGS PSQSQSTSTQ VVFWAGILQA BACU017765/1-843 THPGSGSSQE GAGQKAASPG SPRDSHPLGS PSQSQSTSTQ VAFWAGILQA 201 250 ENSTTRP00000011325/1-1018 QMCVLDLQEE LEKTEGIRAE LRCCLPTASP DLP------- --RDSGLHRS ENSP00000245796/1-1056 QMCVLDLEEE LEKTEGLKAG LKCCLPTPPV DLP------- --GDTGLHSS ENSBTAP00000025391/1-1034 QMCVLDLEEE LEKTEGLRAE LRCCIPTAPA DLPTFPSSPV GPRNSGLLPS bmy_09036T0/1-967 QMCVLDLEEE LEKTEGIRAE LRCCLPTASP DLPALPSSPV GPRDSGLHPS BACU017765/1-843 QMCVLDLEEE LEKTEGIRAE LRCCLPTASP DLPALRSSPA GPRDSGLHPS 251 300 ENSTTRP00000011325/1-1018 TPVDVHGASG EESNGPEGEN RKPAWPREGA PESSPEWGPE EESIFFDNPL ENSP00000245796/1-1056 PPEN--EDSG EDSSEPEGEG Q--AWLREGT PDSSPQWGAE EESMFFSNPL ENSBTAP00000025391/1-1034 PPPDANEASE DDSSGPEGEP QKPAWPREGT LDLSPEWSAE EESIFFDNPL bmy_09036T0/1-967 PPVDVHEASG EDSSGPEGEN RNPAWPRKGA PDSSPD---- ---------- BACU017765/1-843 PPVDVHEASG EDSSGPEGEN RNPAWPREGV PDLSPEWGPE EESIFFDNPL 301 350 ENSTTRP00000011325/1-1018 FLESPSSAPS VSEARFSWGF SDPCADVRTG PQSPQTLEPS PPGGSVPWEL ENSP00000245796/1-1056 FLASPCSENS ASGECFSWGA SDSHAGVRTG PESPATLEPP LPEDTVLWEL ENSBTAP00000025391/1-1034 FLESPCSDTS ASETHFSWGF SDSYVDVRTG SQSPQTLEPP PSEGRVPWEL bmy_09036T0/1-967 ---------- ---------- ---------- ---------- ---------- BACU017765/1-843 FLESPSLDPS VSEARFSWGF SDPCADVRTG PQSPQTLEPS PPGGSVLWEL 351 400 ENSTTRP00000011325/1-1018 GREPDLGDSA VDPSGHTTPP CPVPTCRLHS SSWAVLGTTE GAPAAPPGQE ENSP00000245796/1-1056 ESEPDLGDGA A-ISGHCTPP FPVPIYKPHS ICWASVAAAE GAPAAPPGHG ENSBTAP00000025391/1-1034 GGEPDLGEST AESSGHTTPP FPVPTYRPHS FSWVMVDTPE GAPAAPSSQE bmy_09036T0/1-967 ---------T VDSSGHATPP FPLPTYRLHS SSWAVVGTTE GAPAAPPGQE BACU017765/1-843 GSEPDLGDST VDSSEHATPP FPVPTYRLHS SSWAVVGTTE GAPAAPPGQE 401 450 ENSTTRP00000011325/1-1018 ESEGAS-LAP APSAASCVDK ALTWETERVG YDASPATYPV QPWXXXXXXX ENSP00000245796/1-1056 ESEGDR-LGP APSAAPCVDE ALTWESGCVG SDLGPAAHPV QPWASLSPEG ENSBTAP00000025391/1-1034 ETE------- ---------- -------CLG TWTEGRTFLC HHW----AQN bmy_09036T0/1-967 ESEVSRALGT NPRL------ -------CVG TRKEGPSSVA LP----SPEG BACU017765/1-843 ESE------- ---------- ---------- ---------- ---------- 451 500 ENSTTRP00000011325/1-1018 XXXXXXXXX- ---------- ---------- ---------- ---------X ENSP00000245796/1-1056 WQ-RGGPFWP ---------- ---------- ---------- ---------Q ENSBTAP00000025391/1-1034 SLPFVFRLWP PTSKKVPTVT EQGSTCRGDL FSRIFHRIQF HQLRPPGQWQ bmy_09036T0/1-967 WQTKEVPSWP ---------- ---------- ---------- ---------Q BACU017765/1-843 ---------- ---------- ---------- ---------- ---------- 501 550 ENSTTRP00000011325/1-1018 XXXXXXXXXD RRAECAQESA PCTVSPG-PR GSPASSSEPS SPESEARGPS ENSP00000245796/1-1056 VTLNSQDRDE REGGHPQESL PCTLAPC-PW RSPASSPEPS SPESESRGPG ENSBTAP00000025391/1-1034 RSLISTSTSD KDTECVQESA PCTVTPGHPW GSPASSPEPS SPESGVRGPN bmy_09036T0/1-967 GPLRPQDRGD RHAERAQGSA PCTVSPG-PW GSPASSPEPS SPESEARGPS BACU017765/1-843 ---------- ---------- ---------- ---------- ---------- 551 600 ENSTTRP00000011325/1-1018 PRPSPLSSQE GSPQLWGRHR GSVLSTWMLG TSSPSFPETD GAAPTSLERE ENSP00000245796/1-1056 PRPSPASSQE GSPQLQHHSS G-ILPKWTLD ASQSSLLETD GEQPSSLKKK ENSBTAP00000025391/1-1034 SLPSPVSSRE GSLRLQGHPP GSVLPEWTLD APSPSFLETD GAEPGSLEKE bmy_09036T0/1-967 PRPSPVSSQE GSPQLWSHPP GSVLPTWMLD TSSPSFLETD GAEPSSLEKE BACU017765/1-843 ---------E GSPQLWNQPP GSVLPTWMLD TTSPSFLETE GAEPSSLEKE 601 650 ENSTTRP00000011325/1-1018 KAGEAPSPGK EVKSDGPAGT AEAGARQPDV LLTSTEGGSL RSLMDFHRLP ENSP00000245796/1-1056 EAGEAPKPGE EVKSEGTARP AETGDVQPDI HLTSAEHENL RTPMNSSWLP ENSBTAP00000025391/1-1034 EAGEAPTQGK EVKL-SPART AEAGASQPDA CLTSAKT--- --------LP bmy_09036T0/1-967 KAGEAPSPGK EVKSEGQART AEAGASQPDV LLTSTEG--- --------LP BACU017765/1-843 KAGEAPSPGK EVKSEGPART AEAGASQPDV LLTSTEG--- --------PP 651 700 ENSTTRP00000011325/1-1018 ESPVPHAQPP EEGQRPPAGG KVENGVRTDK VAWNLASRLY RLEGFRKSEV ENSP00000245796/1-1056 GSPMPQAQSP EEGQRPPAGD KLANGVRNNK VAWNLASRLY RLEGFRKSEV ENSBTAP00000025391/1-1034 GSPMPQVQPP EEGQRLPAGD KLANGVRTDK VAWNLASRLY HLEGFRKSEV bmy_09036T0/1-967 ESPVPQAQPP EEGQRPPAGD KLANGVRTDK VAWNLASRLY RLEGFRKSEV BACU017765/1-843 ESPVPEAQPP EEGQRPPAGD KLANGVRTDK VAWNLASRLY RLEGFRKSEV 701 750 ENSTTRP00000011325/1-1018 AAYLQKNNDF SRTVAEKYLS FFQFGGQSLD RALRGFLHAL VLSEETQERE ENSP00000245796/1-1056 AAYLQKNNDF SRAVAEEYLS FFQFGGQSLD RALRSFLQAL VLSGETQERE ENSBTAP00000025391/1-1034 AAYLRKNNDF SRAVAEAYLS FFQFGGQSLD RALRGFLQAL VLSGETQERE bmy_09036T0/1-967 AAYLRKNNDF SRTVAEKYLS FFQFGGQSLD RALRGFLHAL VLSGETQERE BACU017765/1-843 AAYLQK---- ---------- ---------- ---KGFLHAL VLSGETQERE 751 800 ENSTTRP00000011325/1-1018 RILYQFSKRF YHCNPGLFSS V---DCVHTL TCAVMLLNTD LHGQNLGKSM ENSP00000245796/1-1056 RILYQFSRRF HHCNPGIFPS V---DSVHTL TCAIMLLNTD LHGQNIGKSM ENSBTAP00000025391/1-1034 RILYQFSKRF HHCNPGLFSS VAGADCVHTL TCAIMLLNTD LHGQNIGKSM bmy_09036T0/1-967 RILYQFSKRF YHCNPGLFSS V---DCVHTL TCAIMLLNTD LHGQNIGKSM BACU017765/1-843 RILYQFSKRF YHCNPGLFSS ---------- ---------- ----NIGKSM 801 850 ENSTTRP00000011325/1-1018 SCQEFITNLS GLRDGGNFPK ELLKALYWSI RSEKLEWAVX XXXXXXXXXX ENSP00000245796/1-1056 SCQEFITNLN GLRDGGNFPK ELLKALYWSI RSEKLEWAVD EEDTARPEKA ENSBTAP00000025391/1-1034 SCQEFITNLN GLRDGGNFPK ELLKALYWSI RSEKLEWAVD EEDTARPEKA bmy_09036T0/1-967 SCQEFITNLN GLRDGGNFPK EVLKALYWSI RSEKLEWAVD EEDAARPEKA BACU017765/1-843 SCQEFITNLN GLRDGGNFPK EVLKALYWSI RSEKLEWAVD EEDAARPEKA 851 900 ENSTTRP00000011325/1-1018 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000245796/1-1056 QPSLPAGKMS KPFLQLAQDP TVPTYKQGIL ARKMHQDADG KKTPWGKRGW ENSBTAP00000025391/1-1034 QPSPPAGKMS NPFLQLAQDP TVPTYKQGFL ARKMHQDADG KKTPWGKRGW bmy_09036T0/1-967 RPSALAGKMS NPFLQLVQDP TVPTYKQGIL PRKMHQDADG KKTPWGKRGW BACU017765/1-843 RPSALAGKMS NPFLQLVQDP TVPTYKQGIL PRKMHQDADG KKTPWGKRGW 901 950 ENSTTRP00000011325/1-1018 XXXXXXXXXX XXXXXX-XXX XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX ENSP00000245796/1-1056 KMFHTLLRGM VLYFLKQGED HCLEGESLVG QMVDEPVGVH HSLATPATHY ENSBTAP00000025391/1-1034 KMLHTLLRGM VLYFLK-GED HALDGESLVG QMVDEPVGVH HSLATPATHY bmy_09036T0/1-967 KMLHTVLRGM VLYFLK-GED HGLEGESLLG QMVDEPVGVH HSLATPATHY BACU017765/1-843 KVLHTVLRGM VLYFLK-GED HGLEGESLLG QMVEEPVGVH HSLATPATHY 951 1000 ENSTTRP00000011325/1-1018 XXXXXXXXXX XXXXXXXXXX XXXXXXXXXX XXXXILAAAT HSAPP-PAAV ENSP00000245796/1-1056 TKKPHVFQLR TADWRLYLFQ APTAKEMSSW IARINLAAAT HSAPPFPAAV ENSBTAP00000025391/1-1034 TKKPHVFQLR TADWRLYLFQ APTAQEMTSW IARINLAAAT HSAPPFPAAV bmy_09036T0/1-967 TKKPHVFQLR TADWRLYLFQ APTAQEMTSW IARINLAAAT HSAPPFPAAV BACU017765/1-843 TKKPHVFQLR TADWRLYLFQ APTAQEMTSW IARINLAAAT HSAPPFPAAV 1001 1050 ENSTTRP00000011325/1-1018 GSQRKFVRPI LPVGPAQSS- EEQHRSHESC LDAASDDLLD LQRNLPERRG ENSP00000245796/1-1056 GSQRRFVRPI LPVGPAQSSL EEQHRSHENC LDAAADDLLD LQRNLPERRG ENSBTAP00000025391/1-1034 GSQRKFVRPI LPVGPTQGSL EEQHRSHENC LDAASDDLLD LQRNLPERRG bmy_09036T0/1-967 GSQRKFVRPI LPVGPAQSSL EEQHRSHESC LDAASDDLLD LQRNLPERRG BACU017765/1-843 GSQRKFVRPI LPVGPAQSSL EEQHRSHESC LDAASDDLLD LQRNLPERRG 1051 1100 ENSTTRP00000011325/1-1018 RSRELEDYRL RKEYLEYEKT RYETYLQLLV ARLHCPSDDL DLWEEQLGKE ENSP00000245796/1-1056 RGRELEEHRL RKEYLEYEKT RYETYVQLLV ARLHCPSDAL DLWEEQLGRE ENSBTAP00000025391/1-1034 RSRELEDYRL RKEYLEYEKT RYETYLQLLV ARLHCPSEDL DLWEEQLGRE bmy_09036T0/1-967 RGRELEDYRL RKEYLEYEKT RYETYLQLLV ARLHSPSDDL DLWEEQLGKE BACU017765/1-843 RGRELEDYRL RKEYLEYEKT RYETYLQLLV ARLHSPSDDL DLWEEQLGKE 1101 1150 ENSTTRP00000011325/1-1018 AAGPQESKPS LKKSHSSPSL HLDEAPTTAK VKRNISERRT YRKIIPKRNR ENSP00000245796/1-1056 AGGTREPKLS LKKSHSSPSL HQDEAPTTAK VKRNISERRT YRKIIPKRNR ENSBTAP00000025391/1-1034 AGGLQEPKPS LKKSHSSPSL HQDEAPTTAK VKRNISERRT YRKIIPKRNR bmy_09036T0/1-967 AGGLQESKPS LKKSHSSPSL HLDEAPTTAK VKRNISERRT YRKIIPKRNR BACU017765/1-843 AGGPQESKPS LKKSHSSPSL HLDEAPATAK VKRNISERRT YRKIIPKRNR 1151 1200 ENSTTRP00000011325/1-1018 NPL ENSP00000245796/1-1056 NQL ENSBTAP00000025391/1-1034 NQL bmy_09036T0/1-967 NQL BACU017765/1-843 NQL